Created
June 15, 2015 09:20
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poretools error
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[smoss@bioservd ~]$ poretools | |
Warning! ***HDF5 library version mismatched error*** | |
The HDF5 header files used to compile this application do not match | |
the version used by the HDF5 library to which this application is linked. | |
Data corruption or segmentation faults may occur if the application continues. | |
This can happen when an application was compiled by one version of HDF5 but | |
linked with a different version of static or shared HDF5 library. | |
You should recompile the application or check your shared library related | |
settings such as 'LD_LIBRARY_PATH'. | |
You can, at your own risk, disable this warning by setting the environment | |
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'. | |
Setting it to 2 or higher will suppress the warning messages totally. | |
Headers are 1.8.8, library is 1.8.14 | |
SUMMARY OF THE HDF5 CONFIGURATION | |
================================= | |
General Information: | |
------------------- | |
HDF5 Version: 1.8.14 | |
Configured on: Mon Jun 15 09:56:15 BST 2015 | |
Configured by: smoss@bioservd | |
Configure mode: production | |
Host system: x86_64-unknown-linux-gnu | |
Uname information: Linux bioservd 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 GNU/Linux | |
Byte sex: little-endian | |
Libraries: static, shared | |
Installation point: /home/smoss/.linuxbrew/Cellar/hdf5/1.8.14 | |
Compiling Options: | |
------------------ | |
Compilation Mode: production | |
C Compiler: /home/smoss/.linuxbrew/bin/gcc-5 | |
CFLAGS: -Os -w -pipe -march=core2 | |
H5_CFLAGS: -ansi -pedantic -Wall -W -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -O -fomit-frame-pointer -finline-functions | |
AM_CFLAGS: | |
CPPFLAGS: -isystem/home/smoss/.linuxbrew/include | |
H5_CPPFLAGS: -D_POSIX_C_SOURCE=199506L -DNDEBUG -UH5_DEBUG_API | |
AM_CPPFLAGS: -I/home/smoss/.linuxbrew/opt/szip/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE | |
Shared C Library: yes | |
Static C Library: yes | |
Statically Linked Executables: no | |
LDFLAGS: -L/home/smoss/.linuxbrew/lib -Wl,-rpath,/home/smoss/.linuxbrew/lib | |
H5_LDFLAGS: | |
AM_LDFLAGS: -L/home/smoss/.linuxbrew/Cellar/hdf5/1.8.14/lib -L/home/smoss/.linuxbrew/opt/szip/lib | |
Extra libraries: -lsz -lz -lrt -ldl -lm | |
Archiver: ar | |
Ranlib: ranlib | |
Debugged Packages: | |
API Tracing: no | |
Languages: | |
---------- | |
Fortran: no | |
C++: yes | |
C++ Compiler: /home/smoss/.linuxbrew/bin/g++-5 | |
C++ Flags: -Os -w -pipe -march=core2 | |
H5 C++ Flags: | |
AM C++ Flags: | |
Shared C++ Library: yes | |
Static C++ Library: yes | |
Features: | |
--------- | |
Parallel HDF5: no | |
High Level library: yes | |
Threadsafety: no | |
Default API Mapping: v18 | |
With Deprecated Public Symbols: yes | |
I/O filters (external): deflate(zlib),szip(encoder) | |
I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset | |
MPE: no | |
Direct VFD: no | |
dmalloc: no | |
Clear file buffers before write: yes | |
Using memory checker: no | |
Function Stack Tracing: no | |
Strict File Format Checks: no | |
Optimization Instrumentation: no | |
Large File Support (LFS): yes | |
Bye... | |
Aborted |
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@gawbul, I'm running into a similar problem to this error. Did you figure out how to fix this?