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MISSING MAKER PREREQUISITES - CANNOT CONTINUE!!
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==> Installing maker from homebrew/homebrew-science | |
/usr/bin/env perl -e use Bio::Perl | |
/usr/bin/env perl -e use Bit::Vector | |
/usr/bin/env perl -e use DBD::SQLite | |
/usr/bin/env perl -e use DBI | |
/usr/bin/env perl -e use File::Which | |
/usr/bin/env perl -e use IO::All | |
/usr/bin/env perl -e use IO::Prompt | |
/usr/bin/env perl -e use Inline | |
/usr/bin/env perl -e use Perl::Unsafe::Signals | |
/usr/bin/env perl -e use PerlIO::gzip | |
/usr/bin/env perl -e use forks | |
/usr/bin/env perl -e use forks::shared | |
/usr/bin/env perl -e use Bio::Perl | |
/usr/bin/env perl -e use Bit::Vector | |
/usr/bin/env perl -e use DBD::SQLite | |
/usr/bin/env perl -e use DBI | |
/usr/bin/env perl -e use File::Which | |
/usr/bin/env perl -e use IO::All | |
/usr/bin/env perl -e use IO::Prompt | |
/usr/bin/env perl -e use Inline | |
/usr/bin/env perl -e use Perl::Unsafe::Signals | |
/usr/bin/env perl -e use PerlIO::gzip | |
/usr/bin/env perl -e use forks | |
/usr/bin/env perl -e use forks::shared | |
==> Downloading http://yandell.topaz.genetics.utah.edu/maker_downloads/static/maker-2.31.8.tgz | |
Already downloaded: /Library/Caches/Homebrew/maker-2.31.8.tgz | |
==> Verifying maker-2.31.8.tgz checksum | |
tar xf /Library/Caches/Homebrew/maker-2.31.8.tgz | |
==> (echo no; yes '') |perl Build.PL | |
Checking prerequisites... | |
requires: | |
! Bio::Root::Version is not installed | |
! IO::All is not installed | |
! Perl::Unsafe::Signals is not installed | |
! Want is not installed | |
! forks is not installed | |
! forks::shared is not installed | |
recommends: | |
* DBD::Pg is not installed | |
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions | |
of the modules indicated above before proceeding with this installation | |
Run 'Build installdeps' to install missing prerequisites. | |
MAKER supports distributed parallelization via MPI. | |
Would you like to configure MAKER for MPI (This | |
requires that you have an MPI client installed)? [N ]Created MYMETA.yml and MYMETA.json | |
Creating new 'Build' script for 'MAKER' version 'v2.31.8' | |
The file 'Build' has been created for you to finish installing MAKER. | |
============================================================================== | |
STATUS MAKER v2.31.8 | |
============================================================================== | |
PERL Dependencies: MISSING | |
! Bio::Root::Version | |
! forks::shared | |
! Want | |
! IO::All | |
! forks | |
! Perl::Unsafe::Signals | |
External Programs: VERIFIED | |
External C Libraries: VERIFIED | |
MPI SUPPORT: DISABLED | |
MWAS Web Interface: DISABLED | |
MAKER PACKAGE: MISSING PREREQUISITES | |
Important Commands: | |
./Build installdeps #installs missing PERL dependencies | |
./Build installexes #installs all missing external programs | |
./Build install #installs MAKER | |
./Build status #Shows this status menu | |
Other Commands: | |
./Build repeatmasker #installs RepeatMasker (asks for RepBase) | |
./Build blast #installs BLAST (NCBI BLAST+) | |
./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) | |
./Build snap #installs SNAP | |
./Build augustus #installs Augustus | |
./Build apollo #installs Apollo | |
./Build gbrowse #installs GBrowse (must be root) | |
./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) | |
./Build webapollo #installs WebApollo (use maker2wap to create DBs) | |
./Build mpich2 #installs MPICH2 (but manual install recommended) | |
==> ./Build install | |
* MISSING MAKER PREREQUISITES - CANNOT CONTINUE!! | |
Building MAKER | |
couldn't understand kern.osversion `14.3.0' | |
==> Formula | |
Tap: homebrew/homebrew-science | |
Path: /usr/local/Library/Taps/homebrew/homebrew-science/maker.rb | |
==> Configuration | |
HOMEBREW_VERSION: 0.9.5 | |
ORIGIN: https://github.com/Homebrew/homebrew | |
HEAD: 716e4dc503e2912e3c492739e31e2b0317a1dfc0 | |
Last commit: 3 days ago | |
HOMEBREW_PREFIX: /usr/local | |
HOMEBREW_CELLAR: /usr/local/Cellar | |
CPU: 8-core 64-bit ivybridge | |
OS X: 10.10.3-x86_64 | |
Xcode: 6.3.1 | |
CLT: 6.3.1.0.1.1429149539 | |
couldn't understand kern.osversion `14.3.0' | |
GCC-4.2: build 5666 | |
Clang: 6.1 build 602 | |
X11: 2.7.7 => /opt/X11 | |
System Ruby: 2.0.0-p481 | |
Perl: /Users/stevemoss/perl5/perlbrew/perls/perl-5.20.2/bin/perl | |
Python: /Users/stevemoss/.pyenv/shims/python => /Users/stevemoss/.pyenv/versions/2.7.9/bin/python2.7 | |
Ruby: /Users/stevemoss/.rbenv/shims/ruby => /Users/stevemoss/.rbenv/versions/2.2.2/bin/ruby | |
Java: 1.8.0_45 | |
==> ENV | |
HOMEBREW_CC: clang | |
HOMEBREW_CXX: clang++ | |
MAKEFLAGS: -j8 | |
CMAKE_PREFIX_PATH: /usr/local/opt/gettext:/usr/local/opt/libffi:/usr/local | |
CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
PKG_CONFIG_PATH: /usr/local/opt/libpng/lib/pkgconfig:/usr/local/opt/pcre/lib/pkgconfig:/usr/local/opt/libffi/lib/pkgconfig:/usr/local/opt/glib/lib/pkgconfig | |
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/10.10 | |
ACLOCAL_PATH: /usr/local/opt/gettext/share/aclocal:/usr/local/share/aclocal | |
PATH: /usr/local/Library/ENV/4.3:/usr/local/opt/jpeg/bin:/usr/local/opt/libpng/bin:/usr/local/opt/pcre/bin:/usr/local/opt/blast/bin:/usr/local/opt/gettext/bin:/usr/local/opt/glib/bin:/usr/local/opt/exonerate/bin:/usr/local/opt/hmmer/bin:/usr/local/opt/rmblast/bin:/usr/local/opt/trf/bin:/usr/local/opt/repeatmasker/bin:/usr/local/opt/snap/bin:/usr/bin:/bin:/usr/sbin:/sbin |
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