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Steve Moss gawbul
gawbul
/ r66_unique_family_descriptions.csv
Created
March 21, 2015 19:01
r66_unique_family_descriptions.csv
We can make this file beautiful and searchable if this error is corrected: No commas found in this CSV file in line 0.
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| Family.Description | |
| AMBIGUOUS | |
| DISINTEGRIN AND METALLOPROTEINASE DOMAIN CONTAINING 5 TRANSMEMBRANE METALLOPROTEINASE DISINTEGRIN AND CYSTEINE RICH II TMDC II | |
| PROBABLE RIBOSOME BIOGENESIS RLP24 RIBOSOMAL L24 DOMAIN CONTAINING 1 | |
| ADENOSINE RECEPTOR A3 | |
| TRANSCRIPTION FACTOR 19 TCF 19 TRANSCRIPTION FACTOR SC1 | |
| PROLIFERATION ASSOCIATED 2G4 P38 2G4 | |
| TRIPARTITE MOTIF CONTAINING 40 | |
| ANKYRIN REPEAT AND SOCS BOX ASB | |
| BUTYROPHILIN 2 |
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| # load libraries | |
| library(gdata) | |
| library(reshape2) | |
| library(ggplot2) | |
| # load data - trim last two rows | |
| spectra_data <- read.xls("/Users/stevemoss/Downloads/CORRECTIONS.xls", sheet="Corrected Values")[1:11,] | |
| names(spectra_data) | |
| head(spectra_data) | |
| tail(spectra_data) |
gawbul
/ introduction_to_loops_for_biologists.ipynb
Last active
January 4, 2016 05:39
Introduction to loops for biologists
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gawbul
/ parse_rad_tags.awk
Created
December 9, 2013 22:33
A script to parse a RAD tags file and display the line number and individual id/tag id pairs field when the field has only a specific number of individuals (in the case n==3)
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| @@ ENSFM00500000274301 (((((((((Homosapiens<1>_0.010967:6.4,Pantroglodytes<1>_0.004562:6.4)_0.007859:2.4,Gorillagorilla<1>_0.012414:8.8)_0.005772:6.9,Pongoabelii<1>_0.004608:15.7)_0.004809:4.7,Nomascusleucogenys<1>_0.004848:20.4)_0.005138:8.8,Macacamulatta<1>_0.004726:29.2)_0.006389:13.4,Callithrixjacchus<1>_0.004113:42.6)_0.005382:22.6,Tarsiussyrichta<0>_0.012865:65.2)_0.006876:8.8,(Microcebusmurinus<1>_0.003875:57.9,Otolemurgarnettii<1>_0.002941:57.9)_0.001924:16.1)_0.005017:16,Tupaiabelangeri<1>_0.000000:90) | |
| @@ ENSFM00500000274300 (((((((((Homosapiens<1>_0.004779:6.4,Pantroglodytes<1>_0.005284:6.4)_0.006865:2.4,Gorillagorilla<1>_0.005655:8.8)_0.004013:6.9,Pongoabelii<1>_0.004926:15.7)_0.006409:4.7,Nomascusleucogenys<0>_0.010497:20.4)_0.001390:8.8,Macacamulatta<2>_0.009068:29.2)_0.004651:13.4,Callithrixjacchus<1>_0.005251:42.6)_0.004780:22.6,Tarsiussyrichta<0>_0.008096:65.2)_0.002459:8.8,(Microcebusmurinus<1>_0.005100:57.9,Otolemurgarnettii<1>_0.001525:57.9)_0.009555:16.1)_0.008878:16,Tupaiabelangeri<1>_0.0 |
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| { | |
| "metadata": { | |
| "name": "Microarray Heatmap in R" | |
| }, | |
| "nbformat": 3, | |
| "nbformat_minor": 0, | |
| "worksheets": [ | |
| { | |
| "cells": [ | |
| { |
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| -----BEGIN PGP PUBLIC KEY BLOCK----- | |
| Version: GnuPG/MacGPG2 v2.0.27 | |
| Comment: GPGTools - https://gpgtools.org | |
| mQINBFUATqwBEAD5zjucZ/orZU5KLqLpVhqUyV0m3+ELVu3hNJL05X4d8go3ynWQ | |
| 6kYq2vtD9g+illHMQubA41k5/KhCWx/E/v33JpMbvr6EDuqlwZ6SUjp+k8KZ4Gja | |
| UZu3cm2dx9JnvTvnDPb7vB16m/tbF01N22JhBu/AeX5Qv7+MesJ1gZtyC20p1iDf | |
| 660yd/wFPSiXAoCOq2inbC/quKH/1DJQbsknBmJDHR4GuMR6rybCr0GEqBUGws65 | |
| 0Pj3olC8cSG6WM7OlZ9rXW57vwZeoSLWCoQoShRPFjzu3tHYPM+LTGxcs40cNydN | |
| VluZgi7/0FpNi60JraidV5UYOUkpxTEbqgRtObACJV45K4xLQmS/CgrL5DS9HMS2 |
gawbul
/ Microbial_Phylogenetics.ipynb
Last active
December 19, 2015 12:38
Microbial Comparative Phylogenetics
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gawbul
/ roll_ipython_in_aws.md
Created
March 31, 2013 20:39
— forked from iamatypeofwalrus/roll_ipython_in_aws.md
Roll your own IPython Notebook Server with AWS
Version 3, 29 June 2007
Copyright © 2007 Free Software Foundation, Inc. <http://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed.