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   2 The Lancet	1823
  19 The Lancet	1824
  78 The Lancet	1825
  97 The Lancet	1826
 152 The Lancet	1827
 257 The Lancet	1828
 273 The Lancet	1829
 248 The Lancet	1830
 307 The Lancet	1831
 388 The Lancet	1832

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require 'terrier'
require 'fileutils'

resolved_dois = Hash.new

base_name = ARGV[0]

FileUtils.touch(base_name + ".resolved")
File.open(base_name+".resolved", "r") do |f|
  f.each_line do |line|

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### Keybase proof

I hereby claim:

  * I am gedankenstuecke on github.
  * I am gedankenstuecke (https://keybase.io/gedankenstuecke) on keybase.
  * I have a public key whose fingerprint is F7FC 60B7 8C29 19F2 F94A  CD6E 227A 9EA1 AF38 635C

To claim this, I am signing this object:

gedankenstuecke

Dear Mx Advertiser,
The purpose of this letter is to welcome you on behalf of the Organizing Committee, to be a CROWDFUNDING CONTRIBUTOR at the International Crowdfunding Campaign of Jon & Bastian: https://igg.me/p/1861431/twtr/1756182
Based on your eminence in this field, we are glad to have your money.

Benefits:
➢	All accepted donations will be published in our campaign reports
➢	Each donation will help us get to opencon!
➢	Certification by the International Invoicing Committee of Indiegogo
➢	Furnish funds to the fellow scientist for the on-going networking work
➢	The warm fuzzy feeling of helping the eminent experts in the field

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LOCUS       NC_024258             155554 bp    DNA     circular PLN 02-JUL-2014
DEFINITION  Fragaria iinumae voucher fc199s5 plastid, complete genome.
ACCESSION   NC_024258
VERSION     NC_024258.1  GI:657171703
DBLINK      BioProject: PRJNA252471
KEYWORDS    RefSeq.
SOURCE      plastid Fragaria iinumae
  ORGANISM  Fragaria iinumae
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;

gedankenstuecke

#!/usr/bin/env bash

docker stop postgres
docker rm postgres
docker stop redis
docker rm redis
docker stop snpr
docker rm snpr
docker stop sidekiq
docker rm sidekiq

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	# this one works, plink is in cwd + conversion to BED files works flawlessly
	
for f in usable_files:
	# gid is the genotype-ID
	gid = f.split("/")[-1].split("_")[1].replace("file","")
	# converts the genotyping file to plink format, using the gid as sample name
	call = "./plink --23file "+ f + " F" + gid + "ID" + gid + "I 1"
	call += " --out 23andme_plink/genotypeid_" + gid
	print "convert gid " + gid
	subprocess.call(call,shell=True)

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[global]

#Mate-pair mapping parameters:
bowtie2_threads=1
bowtie2_read1=clad9_ast1_matepair1.fq
bowtie2_read2=clad9_ast1_matepair2.fq
bowtie2_maxins=5500
bowtie2_minins=4500

#CE-stat computation parameters:

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(gdb) run
Starting program: /home/bastian/bin/Metassembler/bin/mateAn -m 5000 -s 500 -p ./MIRA/CEstat/MIRA.ce/MIRA -e 0 -z 3 -q 20 -N 1 -f 6 -c 0.05 -n 30 -a ./MIRA/CEstat/BWTaln/MIRA.mtp.sam
---------- Parameters:
----------------------
-a : ./MIRA/CEstat/BWTaln/MIRA.mtp.sam
-m : 5000
-s : 500
-p : ./MIRA/CEstat/MIRA.ce/MIRA
-e : 0
-z : 3

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