readme.md

Let's install linuxbrew and pyenv

sh -c "$(curl -fsSL https://raw.githubusercontent.com/Linuxbrew/install/master/install.sh)"
brew install pyenv pyenv-virtualenv pyenv-which-ext
pyenv install miniconda3-latest
pyenv global miniconda3-latest

then we need to add into .bash_profile

# .bash_profile
# Get the aliases and functions
if [ -f ~/.bashrc ]; then
  . ~/.bashrc
fi

# User specific environment and startup programs

PATH=$PATH:$HOME/.local/bin:$HOME/bin

export PATH

# Not all machines at snm work with brew, and example of three of them.
if [[ $(hostname) =~ a00769|a00643|a00710|a00789|a00790|a00810|a00811|a00812|a00813|a00814|a00815 ]]; then  export PATH="${HOME}/.linuxbrew/bin:$PATH"
  export MANPATH="${HOME}/.linuxbrew/share/man:$MANPATH"
  export INFOPATH="${HOME}/.linuxbrew/share/info:$INFOPATH"
  export PYENV_ROOT="$HOME/.pyenv"
  export PATH="$PYENV_ROOT/bin:$PATH"

  eval "$(pyenv init -)"

  if which pyenv-virtualenv-init > /dev/null; then eval "$(pyenv virtualenv-init -)"; fi

  . ${HOME}/.pyenv/versions/miniconda3-latest/etc/profile.d/conda.sh
  #conda activate
  export PYENV_VIRTUALENV_DISABLE_PROMPT=1

  pyenvVirtualenvUpdatePrompt() {
    RED='\[\e[0;31m\]'
    GREEN='\[\e[0;32m\]'
    BLUE='\[\e[0;34m\]'
    RESET='\[\e[0m\]'
    [ -z "$PYENV_VIRTUALENV_ORIGINAL_PS1" ] && export PYENV_VIRTUALENV_ORIGINAL_PS1="$PS1"
    [ -z "$PYENV_VIRTUALENV_GLOBAL_NAME" ] && export PYENV_VIRTUALENV_GLOBAL_NAME="$(pyenv global)"
    VENV_NAME="$(pyenv version-name)"
    VENV_NAME="${VENV_NAME##*/}"
    GLOBAL_NAME="$PYENV_VIRTUALENV_GLOBAL_NAME"

    # non-global versions:
    COLOR="$BLUE"
    # global version:
    [ "$VENV_NAME" == "$GLOBAL_NAME" ] && COLOR="$RED"
    # virtual envs:
    [ "${VIRTUAL_ENV##*/}" == "$VENV_NAME" ] && COLOR="$GREEN"

    if [ -z "$COLOR" ]; then
      PS1="$PYENV_VIRTUALENV_ORIGINAL_PS1"
    else
      #conda activate
      PS1="($CONDA_DEFAULT_ENV)($COLOR${VENV_NAME}$RESET)$PYENV_VIRTUALENV_ORIGINAL_PS1"
    fi
    export PS1
  }

  export PROMPT_COMMAND="$PROMPT_COMMAND pyenvVirtualenvUpdatePrompt;"
fi

and comment in .bashrc

# .bashrc

# Source global definitions

# Uncomment the following line if you don't like systemctl's auto-paging feature:
# export SYSTEMD_PAGER=

# User specific aliases and functions

export COLOR_BOLD="\[\033[1;35m\]"
export COLOR_DEFAULT="\[\e[0m\]"
export PROMPT_DIRTRIM=8
export HNAME=$(grep PS1= /etc/profile.d/bashpromt.sh | sed -r  -e 's|PS1=\S+@(\S+)\s.*|\1|')

export PS1="$COLOR_BOLD[\u@$HNAME \w]\$ \e[m\n"

export HISTCONTROL=ignoredups:erasedups
export HISTSIZE=100000000000
export HISTFILESIZE=10000000000
shopt -s histappend
HISTTIMEFORMAT="%d/%m/%y %T "

log_bash_persistent_history()
{
    [[
    $(history 1) =~ ^\ *[0-9]+\ +([^\ ]+\ [^\ ]+)\ +(.*)$
    ]]
    local date_part="${BASH_REMATCH[1]}"
    local command_part="${BASH_REMATCH[2]}"
    local host="$(grep PS1= /etc/profile.d/bashpromt.sh | sed -r  -e 's|PS1=\S+@(\S+)\s.*|\1|')"
    if [ "$command_part" != "$PERSISTENT_HISTORY_LAST" ]
    then
        echo $host $date_part "|" "$command_part" >> ~/.persistent_history
        export PERSISTENT_HISTORY_LAST="$command_part"
    fi
}



# Stuff to do on PROMPT_COMMAND
run_on_prompt_command()
{
    log_bash_persistent_history
}

export PROMPT_COMMAND="history -a; history -c; history -r; run_on_prompt_command; $PROMPT_COMMAND"
#bash history on multiple terminal windows
#avoid duplicates
#append history entries
alias phgrep='cat ~/.persistent_history|grep --color'
alias hgrep='history|grep --color'
export STAY_OFF_MY_LAWN=1
alias fix='reset; stty sane; tput rs1; clear; echo -e "\033c"'

genomewalker/readme.md