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gidden/gist:18ad78ff657c59a369bd

Created August 4, 2014 14:49
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regression test failures, hdf5 1.8.13, osx 10.9.3
Raw
gistfile1.txt
.......................................................................FEFFFEFFFFFF
======================================================================
ERROR: Tests simulations with Predators only.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 44, in check_cmd
print("STDOUT + STDERR:\n\n" + f.read().decode())
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe0 in position 2847: ordinal not in range(128)
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/predator.xml
--------------------- >> end captured stdout << ----------------------
======================================================================
ERROR: Tests simulations with Preys and Predators
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 44, in check_cmd
print("STDOUT + STDERR:\n\n" + f.read().decode())
UnicodeDecodeError: 'ascii' codec can't decode byte 0xbe in position 2719: ordinal not in range(128)
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/lotka_volterra_determ.xml
--------------------- >> end captured stdout << ----------------------
======================================================================
FAIL: Testing for including of other XML files.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 47, in check_cmd
assert_equal(rtn, 0)
AssertionError: 1 != 0
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/include_recipe.xml
STDOUT + STDERR:
:
.CL:CC CC _Q _Q _Q_Q _Q _Q _Q
CC;CCCCCCCC:C; /_\) /_\)/_/\\) /_\) /_\) /_\)
CCCCCCCCCCCCCl __O|/O___O|/O_OO|/O__O|/O__O|/O____________O|/O__
CCCCCCf iCCCLCC /////////////////////////////////////////////////
iCCCt ;;;;;. CCCC
CCCC ;;;;;;;;;. CClL. c
CCCC ,;; ;;: CCCC ; : CCCCi
CCC ;; ;; CC ;;: CCC` `C;
lCCC ;; CCCC ;;;: :CC .;;. C; ; : ; :;;
CCCC ;. CCCC ;;;, CC ; ; Ci ; : ; : ;
iCC :; CC ;;;, ;C ; CC ; : ; .
CCCi ;; CCC ;;;. .C ; tf ; : ; ;.
CCC ;; CCC ;;;;;;; fC : lC ; : ; ;:
iCf ;; CC :;;: tC ; CC ; : ; ;
fCCC :; LCCf ;;;: LC :. ,: C ; ; ; ; ;
CCCC ;; CCCC ;;;: CCi `;;` CC. ;;;; :;.;. ; ,;
CCl ;; CC ;;;; CCC CCL
tCCC ;; ;; CCCL ;;; tCCCCC.
CCCC ;; :;; CCCCf ; ,L
lCCC ;;;;;; CCCL
CCCCCC :;; fCCCCC
. CCCC CCCC .
.CCCCCCCCCCCCCi
iCCCCCLCf
. C. ,
:
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 342 in H5Dopen2(): no name
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 244 in H5Acreate2(): not a location
major: Invalid arguments to routine
minor: Inappropriate type
#001: H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 929 in H5Awrite(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 2288 in H5Aclose(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 415 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_SinkInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 548 in H5Dget_type(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_SinkInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 1161 in H5Dset_extent(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 461 in H5Dget_space(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Shyper.c line 6593 in H5Sselect_hyperslab(): not a data space
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Dio.c line 225 in H5Dwrite(): can't prepare for writing data
major: Dataset
minor: Write failed
#001: H5Dio.c line 257 in H5D__pre_write(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
ERROR(core ):Failed to write to the HDF5 table:
file output_temp.h5
table AgentState_agents_SinkInfo
num. rows 1
rowsize 60
# Column 0
dbtype: 7
size: 16
offset: 0
# Column 1
dbtype: 1
size: 4
offset: 16
# Column 2
dbtype: 1
size: 4
offset: 20
# Column 3
dbtype: 19
size: 20
offset: 24
# Column 4
dbtype: 3
size: 8
offset: 44
# Column 5
dbtype: 3
size: 8
offset: 52
--------------------- >> end captured stdout << ----------------------
======================================================================
FAIL: Failure: AssertionError (1 != 0)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/loader.py", line 251, in generate
for test in g():
File "/Users/gidden/work/cyclus/cyclus/tests/test_lotka_volterra.py", line 34, in test_predator_only
assert_equal(rtn, 0)
AssertionError: 1 != 0
======================================================================
FAIL: Tests simulations with Preys only.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 47, in check_cmd
assert_equal(rtn, 0)
AssertionError: 1 != 0
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/prey.xml
STDOUT + STDERR:
:
.CL:CC CC _Q _Q _Q_Q _Q _Q _Q
CC;CCCCCCCC:C; /_\) /_\)/_/\\) /_\) /_\) /_\)
CCCCCCCCCCCCCl __O|/O___O|/O_OO|/O__O|/O__O|/O____________O|/O__
CCCCCCf iCCCLCC /////////////////////////////////////////////////
iCCCt ;;;;;. CCCC
CCCC ;;;;;;;;;. CClL. c
CCCC ,;; ;;: CCCC ; : CCCCi
CCC ;; ;; CC ;;: CCC` `C;
lCCC ;; CCCC ;;;: :CC .;;. C; ; : ; :;;
CCCC ;. CCCC ;;;, CC ; ; Ci ; : ; : ;
iCC :; CC ;;;, ;C ; CC ; : ; .
CCCi ;; CCC ;;;. .C ; tf ; : ; ;.
CCC ;; CCC ;;;;;;; fC : lC ; : ; ;:
iCf ;; CC :;;: tC ; CC ; : ; ;
fCCC :; LCCf ;;;: LC :. ,: C ; ; ; ; ;
CCCC ;; CCCC ;;;: CCi `;;` CC. ;;;; :;.;. ; ,;
CCl ;; CC ;;;; CCC CCL
tCCC ;; ;; CCCL ;;; tCCCCC.
CCCC ;; :;; CCCCf ; ,L
lCCC ;;;;;; CCCL
CCCCCC :;; fCCCCC
. CCCC CCCC .
.CCCCCCCCCCCCCi
iCCCCCLCf
. C. ,
:
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 194 in H5Dcreate2(): unable to create dataset
major: Dataset
minor: Unable to initialize object
#001: H5Dint.c line 444 in H5D__create_named(): unable to create and link to dataset
major: Dataset
minor: Unable to initialize object
#002: H5L.c line 1638 in H5L_link_object(): unable to create new link to object
major: Links
minor: Unable to initialize object
#003: H5L.c line 1882 in H5L_create_real(): can't insert link
major: Symbol table
minor: Unable to insert object
#004: H5Gtraverse.c line 842 in H5G_traverse(): no name given
major: Symbol table
minor: Object not found
ERROR(core ):Failed to create HDF5 table:
file output_temp.h5
table Failed to create HDF5 table:
file output
chunksize 1024
rowsize 58
#0 SimId
dbtype: 7
h5type: 50331990
size: 16
offset: 0
#1 AgentId
dbtype: 1
h5type: 50331660
size: 4
offset: 16
#2 SimTime
dbtype: 1
h5type: 50331660
size: 4
offset: 20
#3 commod
dbtype: 5
h5type: 50331991
size: 20
offset: 24
#4 birth_freq
dbtype: 1
h5type: 50331660
size: 4
offset: 44
#5 nchildren
dbtype: 1
h5type: 50331660
size: 4
offset: 48
#6 age
dbtype: 1
h5type: 50331660
size: 4
offset: 52
#7 dead
dbtype: 0
h5type: 50331656
size: 1
offset: 56
#8 birth_and_death
dbtype: 0
h5type: 50331656
size: 1
offset: 57
--------------------- >> end captured stdout << ----------------------
======================================================================
FAIL: Failure: AssertionError (1 != 0)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/loader.py", line 251, in generate
for test in g():
File "/Users/gidden/work/cyclus/cyclus/tests/test_lotka_volterra.py", line 62, in test_prey_only
assert_equal(rtn, 0)
AssertionError: 1 != 0
======================================================================
FAIL: Failure: AssertionError (1 != 0)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/loader.py", line 251, in generate
for test in g():
File "/Users/gidden/work/cyclus/cyclus/tests/test_lotka_volterra.py", line 99, in test_lotka_volterra
assert_equal(rtn, 0)
AssertionError: 1 != 0
======================================================================
FAIL: Tests simulations with two facilities with several conversion factors.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 47, in check_cmd
assert_equal(rtn, 0)
AssertionError: 1 != 0
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/minimal_cycle_0.95_0.95.xml
STDOUT + STDERR:
:
.CL:CC CC _Q _Q _Q_Q _Q _Q _Q
CC;CCCCCCCC:C; /_\) /_\)/_/\\) /_\) /_\) /_\)
CCCCCCCCCCCCCl __O|/O___O|/O_OO|/O__O|/O__O|/O____________O|/O__
CCCCCCf iCCCLCC /////////////////////////////////////////////////
iCCCt ;;;;;. CCCC
CCCC ;;;;;;;;;. CClL. c
CCCC ,;; ;;: CCCC ; : CCCCi
CCC ;; ;; CC ;;: CCC` `C;
lCCC ;; CCCC ;;;: :CC .;;. C; ; : ; :;;
CCCC ;. CCCC ;;;, CC ; ; Ci ; : ; : ;
iCC :; CC ;;;, ;C ; CC ; : ; .
CCCi ;; CCC ;;;. .C ; tf ; : ; ;.
CCC ;; CCC ;;;;;;; fC : lC ; : ; ;:
iCf ;; CC :;;: tC ; CC ; : ; ;
fCCC :; LCCf ;;;: LC :. ,: C ; ; ; ; ;
CCCC ;; CCCC ;;;: CCi `;;` CC. ;;;; :;.;. ; ,;
CCl ;; CC ;;;; CCC CCL
tCCC ;; ;; CCCL ;;; tCCCCC.
CCCC ;; :;; CCCCf ; ,L
lCCC ;;;;;; CCCL
CCCCCC :;; fCCCCC
. CCCC CCCC .
.CCCCCCCCCCCCCi
iCCCCCLCf
. C. ,
:
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 342 in H5Dopen2(): no name
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 244 in H5Acreate2(): not a location
major: Invalid arguments to routine
minor: Inappropriate type
#001: H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 929 in H5Awrite(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 2288 in H5Aclose(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 415 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_KFacilityInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 548 in H5Dget_type(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_KFacilityInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 1161 in H5Dset_extent(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 461 in H5Dget_space(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Shyper.c line 6593 in H5Sselect_hyperslab(): not a data space
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Dio.c line 225 in H5Dwrite(): can't prepare for writing data
major: Dataset
minor: Write failed
#001: H5Dio.c line 257 in H5D__pre_write(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
ERROR(core ):Failed to write to the HDF5 table:
file output_temp.h5
table AgentState_agents_KFacilityInfo
num. rows 1
rowsize 162
# Column 0
dbtype: 7
size: 16
offset: 0
# Column 1
dbtype: 1
size: 4
offset: 16
# Column 2
dbtype: 1
size: 4
offset: 20
# Column 3
dbtype: 5
size: 20
offset: 24
# Column 4
dbtype: 5
size: 20
offset: 44
# Column 5
dbtype: 4
size: 50
offset: 64
# Column 6
dbtype: 3
size: 8
offset: 114
# Column 7
dbtype: 3
size: 8
offset: 122
# Column 8
dbtype: 3
size: 8
offset: 130
# Column 9
dbtype: 3
size: 8
offset: 138
# Column 10
dbtype: 3
size: 8
offset: 146
# Column 11
dbtype: 3
size: 8
offset: 154
--------------------- >> end captured stdout << ----------------------
======================================================================
FAIL: Testing for null sink case without a source facility.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 47, in check_cmd
assert_equal(rtn, 0)
AssertionError: 1 != 0
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/null_sink.xml
STDOUT + STDERR:
:
.CL:CC CC _Q _Q _Q_Q _Q _Q _Q
CC;CCCCCCCC:C; /_\) /_\)/_/\\) /_\) /_\) /_\)
CCCCCCCCCCCCCl __O|/O___O|/O_OO|/O__O|/O__O|/O____________O|/O__
CCCCCCf iCCCLCC /////////////////////////////////////////////////
iCCCt ;;;;;. CCCC
CCCC ;;;;;;;;;. CClL. c
CCCC ,;; ;;: CCCC ; : CCCCi
CCC ;; ;; CC ;;: CCC` `C;
lCCC ;; CCCC ;;;: :CC .;;. C; ; : ; :;;
CCCC ;. CCCC ;;;, CC ; ; Ci ; : ; : ;
iCC :; CC ;;;, ;C ; CC ; : ; .
CCCi ;; CCC ;;;. .C ; tf ; : ; ;.
CCC ;; CCC ;;;;;;; fC : lC ; : ; ;:
iCf ;; CC :;;: tC ; CC ; : ; ;
fCCC :; LCCf ;;;: LC :. ,: C ; ; ; ; ;
CCCC ;; CCCC ;;;: CCi `;;` CC. ;;;; :;.;. ; ,;
CCl ;; CC ;;;; CCC CCL
tCCC ;; ;; CCCL ;;; tCCCCC.
CCCC ;; :;; CCCCf ; ,L
lCCC ;;;;;; CCCL
CCCCCC :;; fCCCCC
. CCCC CCCC .
.CCCCCCCCCCCCCi
iCCCCCLCf
. C. ,
:
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 342 in H5Dopen2(): no name
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 244 in H5Acreate2(): not a location
major: Invalid arguments to routine
minor: Inappropriate type
#001: H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 929 in H5Awrite(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 2288 in H5Aclose(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 415 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_SinkInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 548 in H5Dget_type(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_SinkInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 1161 in H5Dset_extent(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 461 in H5Dget_space(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Shyper.c line 6593 in H5Sselect_hyperslab(): not a data space
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Dio.c line 225 in H5Dwrite(): can't prepare for writing data
major: Dataset
minor: Write failed
#001: H5Dio.c line 257 in H5D__pre_write(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
ERROR(core ):Failed to write to the HDF5 table:
file output_temp.h5
table AgentState_agents_SinkInfo
num. rows 1
rowsize 60
# Column 0
dbtype: 7
size: 16
offset: 0
# Column 1
dbtype: 1
size: 4
offset: 16
# Column 2
dbtype: 1
size: 4
offset: 20
# Column 3
dbtype: 19
size: 20
offset: 24
# Column 4
dbtype: 3
size: 8
offset: 44
# Column 5
dbtype: 3
size: 8
offset: 52
--------------------- >> end captured stdout << ----------------------
======================================================================
FAIL: Tests linear growth of sink inventory by checking if the transactions
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 47, in check_cmd
assert_equal(rtn, 0)
AssertionError: 1 != 0
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/source_to_sink.xml
STDOUT + STDERR:
:
.CL:CC CC _Q _Q _Q_Q _Q _Q _Q
CC;CCCCCCCC:C; /_\) /_\)/_/\\) /_\) /_\) /_\)
CCCCCCCCCCCCCl __O|/O___O|/O_OO|/O__O|/O__O|/O____________O|/O__
CCCCCCf iCCCLCC /////////////////////////////////////////////////
iCCCt ;;;;;. CCCC
CCCC ;;;;;;;;;. CClL. c
CCCC ,;; ;;: CCCC ; : CCCCi
CCC ;; ;; CC ;;: CCC` `C;
lCCC ;; CCCC ;;;: :CC .;;. C; ; : ; :;;
CCCC ;. CCCC ;;;, CC ; ; Ci ; : ; : ;
iCC :; CC ;;;, ;C ; CC ; : ; .
CCCi ;; CCC ;;;. .C ; tf ; : ; ;.
CCC ;; CCC ;;;;;;; fC : lC ; : ; ;:
iCf ;; CC :;;: tC ; CC ; : ; ;
fCCC :; LCCf ;;;: LC :. ,: C ; ; ; ; ;
CCCC ;; CCCC ;;;: CCi `;;` CC. ;;;; :;.;. ; ,;
CCl ;; CC ;;;; CCC CCL
tCCC ;; ;; CCCL ;;; tCCCCC.
CCCC ;; :;; CCCCf ; ,L
lCCC ;;;;;; CCCL
CCCCCC :;; fCCCCC
. CCCC CCCC .
.CCCCCCCCCCCCCi
iCCCCCLCf
. C. ,
:
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_SourceInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 548 in H5Dget_type(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_SourceInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 1161 in H5Dset_extent(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 461 in H5Dget_space(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Shyper.c line 6593 in H5Sselect_hyperslab(): not a data space
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Dio.c line 225 in H5Dwrite(): can't prepare for writing data
major: Dataset
minor: Write failed
#001: H5Dio.c line 257 in H5D__pre_write(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
ERROR(core ):Failed to write to the HDF5 table:
file output_temp.h5
table AgentState_agents_SourceInfo
num. rows 1
rowsize 72
# Column 0
dbtype: 7
size: 16
offset: 0
# Column 1
dbtype: 1
size: 4
offset: 16
# Column 2
dbtype: 1
size: 4
offset: 20
# Column 3
dbtype: 5
size: 20
offset: 24
# Column 4
dbtype: 5
size: 20
offset: 44
# Column 5
dbtype: 3
size: 8
offset: 64
--------------------- >> end captured stdout << ----------------------
======================================================================
FAIL: Testing for the stubs example.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 47, in check_cmd
assert_equal(rtn, 0)
AssertionError: 1 != 0
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/stub_example.xml
STDOUT + STDERR:
:
.CL:CC CC _Q _Q _Q_Q _Q _Q _Q
CC;CCCCCCCC:C; /_\) /_\)/_/\\) /_\) /_\) /_\)
CCCCCCCCCCCCCl __O|/O___O|/O_OO|/O__O|/O__O|/O____________O|/O__
CCCCCCf iCCCLCC /////////////////////////////////////////////////
iCCCt ;;;;;. CCCC
CCCC ;;;;;;;;;. CClL. c
CCCC ,;; ;;: CCCC ; : CCCCi
CCC ;; ;; CC ;;: CCC` `C;
lCCC ;; CCCC ;;;: :CC .;;. C; ; : ; :;;
CCCC ;. CCCC ;;;, CC ; ; Ci ; : ; : ;
iCC :; CC ;;;, ;C ; CC ; : ; .
CCCi ;; CCC ;;;. .C ; tf ; : ; ;.
CCC ;; CCC ;;;;;;; fC : lC ; : ; ;:
iCf ;; CC :;;: tC ; CC ; : ; ;
fCCC :; LCCf ;;;: LC :. ,: C ; ; ; ; ;
CCCC ;; CCCC ;;;: CCi `;;` CC. ;;;; :;.;. ; ,;
CCl ;; CC ;;;; CCC CCL
tCCC ;; ;; CCCL ;;; tCCCCC.
CCCC ;; :;; CCCCf ; ,L
lCCC ;;;;;; CCCL
CCCCCC :;; fCCCCC
. CCCC CCCC .
.CCCCCCCCCCCCCi
iCCCCCLCf
. C. ,
:
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 194 in H5Dcreate2(): unable to create dataset
major: Dataset
minor: Unable to initialize object
#001: H5Dint.c line 444 in H5D__create_named(): unable to create and link to dataset
major: Dataset
minor: Unable to initialize object
#002: H5L.c line 1638 in H5L_link_object(): unable to create new link to object
major: Links
minor: Unable to initialize object
#003: H5L.c line 1882 in H5L_create_real(): can't insert link
major: Symbol table
minor: Unable to insert object
#004: H5Gtraverse.c line 842 in H5G_traverse(): no name given
major: Symbol table
minor: Object not found
ERROR(core ):Failed to create HDF5 table:
file output_temp.h5
table Failed to create HDF5 table:
file output
chunksize 1024
rowsize 24
#0 SimId
dbtype: 7
h5type: 50331990
size: 16
offset: 0
#1 AgentId
dbtype: 1
h5type: 50331660
size: 4
offset: 16
#2 SimTime
dbtype: 1
h5type: 50331660
size: 4
offset: 20
--------------------- >> end captured stdout << ----------------------
======================================================================
FAIL: Tests simulations with one facility that has a conversion factor.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gidden/Library/Python/2.7/lib/python/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gidden/work/cyclus/cyclus/tests/tools.py", line 47, in check_cmd
assert_equal(rtn, 0)
AssertionError: 1 != 0
-------------------- >> begin captured stdout << ---------------------
TESTING: running command in .:
cyclus -o output_temp.h5 --input-file ./input/trivial_cycle_0.95_0.95.xml
STDOUT + STDERR:
:
.CL:CC CC _Q _Q _Q_Q _Q _Q _Q
CC;CCCCCCCC:C; /_\) /_\)/_/\\) /_\) /_\) /_\)
CCCCCCCCCCCCCl __O|/O___O|/O_OO|/O__O|/O__O|/O____________O|/O__
CCCCCCf iCCCLCC /////////////////////////////////////////////////
iCCCt ;;;;;. CCCC
CCCC ;;;;;;;;;. CClL. c
CCCC ,;; ;;: CCCC ; : CCCCi
CCC ;; ;; CC ;;: CCC` `C;
lCCC ;; CCCC ;;;: :CC .;;. C; ; : ; :;;
CCCC ;. CCCC ;;;, CC ; ; Ci ; : ; : ;
iCC :; CC ;;;, ;C ; CC ; : ; .
CCCi ;; CCC ;;;. .C ; tf ; : ; ;.
CCC ;; CCC ;;;;;;; fC : lC ; : ; ;:
iCf ;; CC :;;: tC ; CC ; : ; ;
fCCC :; LCCf ;;;: LC :. ,: C ; ; ; ; ;
CCCC ;; CCCC ;;;: CCi `;;` CC. ;;;; :;.;. ; ,;
CCl ;; CC ;;;; CCC CCL
tCCC ;; ;; CCCL ;;; tCCCCC.
CCCC ;; :;; CCCCf ; ,L
lCCC ;;;;;; CCCL
CCCCCC :;; fCCCCC
. CCCC CCCC .
.CCCCCCCCCCCCCi
iCCCCCLCf
. C. ,
:
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 342 in H5Dopen2(): no name
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 244 in H5Acreate2(): not a location
major: Invalid arguments to routine
minor: Inappropriate type
#001: H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 929 in H5Awrite(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5A.c line 2288 in H5Aclose(): not an attribute
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 415 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_KFacilityInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 548 in H5Dget_type(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 358 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#004: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'AgentState_agents_KFacilityInfo' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 1161 in H5Dset_extent(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5D.c line 461 in H5Dget_space(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Shyper.c line 6593 in H5Sselect_hyperslab(): not a data space
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:
#000: H5Dio.c line 225 in H5Dwrite(): can't prepare for writing data
major: Dataset
minor: Write failed
#001: H5Dio.c line 257 in H5D__pre_write(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
ERROR(core ):Failed to write to the HDF5 table:
file output_temp.h5
table AgentState_agents_KFacilityInfo
num. rows 1
rowsize 162
# Column 0
dbtype: 7
size: 16
offset: 0
# Column 1
dbtype: 1
size: 4
offset: 16
# Column 2
dbtype: 1
size: 4
offset: 20
# Column 3
dbtype: 5
size: 20
offset: 24
# Column 4
dbtype: 5
size: 20
offset: 44
# Column 5
dbtype: 4
size: 50
offset: 64
# Column 6
dbtype: 3
size: 8
offset: 114
# Column 7
dbtype: 3
size: 8
offset: 122
# Column 8
dbtype: 3
size: 8
offset: 130
# Column 9
dbtype: 3
size: 8
offset: 138
# Column 10
dbtype: 3
size: 8
offset: 146
# Column 11
dbtype: 3
size: 8
offset: 154
--------------------- >> end captured stdout << ----------------------
----------------------------------------------------------------------
Ran 83 tests in 1.203s
FAILED (errors=2, failures=10)
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