Created
December 7, 2019 08:30
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| Traceback (most recent call last): | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/cwltool/workflow.py", line 639, in __init__ | |
| toolpath_object["run"], loadingContext) | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/cwltool/load_tool.py", line 371, in load_tool | |
| loadingContext, workflowobj, uri) | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/cwltool/load_tool.py", line 307, in resolve_and_validate_document | |
| schema.validate_doc(avsc_names, processobj, document_loader, loadingContext.strict) | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/schema_salad/schema.py", line 397, in validate_doc | |
| raise ValidationException("", None, anyerrors, "*") | |
| schema_salad.exceptions.ValidationException: scratch/repo/1/cwlfiles/casa_applycal.cwl:1:1: Object `scratch/repo/1/cwlfiles/casa_applycal.cwl` | |
| is not valid because | |
| tried `CommandLineTool` but | |
| scratch/repo/1/cwlfiles/casa_applycal.cwl:4:1: the `requirements` field is not valid because | |
| tried array of <InlineJavascriptRequirement | |
| or SchemaDefRequirement or DockerRequirement or | |
| SoftwareRequirement or InitialWorkDirRequirement or | |
| EnvVarRequirement or ShellCommandRequirement or | |
| ResourceRequirement or | |
| SubworkflowFeatureRequirement or | |
| ScatterFeatureRequirement or | |
| MultipleInputFeatureRequirement or | |
| StepInputExpressionRequirement> but | |
| scratch/repo/1/cwlfiles/casa_applycal.cwl:15:3: item is invalid because | |
| - tried InlineJavascriptRequirement but | |
| Expected class | |
| 'InlineJavascriptRequirement' but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried SchemaDefRequirement but | |
| Expected class 'SchemaDefRequirement' | |
| but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried DockerRequirement but | |
| Expected class 'DockerRequirement' but | |
| this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried SoftwareRequirement but | |
| Expected class 'SoftwareRequirement' | |
| but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried InitialWorkDirRequirement but | |
| Expected class | |
| 'InitialWorkDirRequirement' but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried EnvVarRequirement but | |
| Expected class 'EnvVarRequirement' but | |
| this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried ShellCommandRequirement but | |
| Expected class | |
| 'ShellCommandRequirement' but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried ResourceRequirement but | |
| Expected class 'ResourceRequirement' | |
| but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried SubworkflowFeatureRequirement but | |
| Expected class | |
| 'SubworkflowFeatureRequirement' but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried ScatterFeatureRequirement but | |
| Expected class | |
| 'ScatterFeatureRequirement' but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried MultipleInputFeatureRequirement | |
| but | |
| Expected class | |
| 'MultipleInputFeatureRequirement' but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' | |
| - tried StepInputExpressionRequirement but | |
| Expected class | |
| 'StepInputExpressionRequirement' but this is | |
| 'http://commonwl.org/cwltool#InplaceUpdateRequirement' |
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