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@ctrueden
ctrueden / StarDist_cellcast.groovy
Last active July 9, 2026 12:22
Run StarDist 2D in Fiji via Appose using cellcast.
#@ Img image
#@ Double (value=1.0, description="minimum percentile value for normalization") pmin
#@ Double (value=99.8, description="maximum percentile value for normalization") pmax
#@ Double (value=0.479, description="Polygon probability threshold") prob_threshold
#@ Double (value=0.3, description="Non-Maximum Suppression threshold") nms_threshold
#@ Boolean (value=true, description="Set True for GPU inference via WebGPU, False for CPU inference") gpu
#@output Img labels
@ekatrukha
ekatrukha / 3D_tilt_stack_v1.ijm
Created February 7, 2019 18:03
ImageJ macro making a tilted movie out of Z-stack
//ImageJ macro making a tilted movie out of stack
//uses shear transform + rotation
//Eugene Katrukha katpyxa at gmail.com
requires("1.48h");
sTitle=getTitle();
sMovieTitle=sTitle+"_tilt_movie";
setBatchMode(true);
//Dialog