Gökçen Eraslan gokceneraslan
gokceneraslan
/ heartcellatlas_scanpy.ipynb
Created
September 30, 2020 01:33
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gokceneraslan
/ Untitled-2.ipynb
Created
July 4, 2020 18:36
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gokceneraslan
/ Untitled.ipynb
Created
July 4, 2020 18:15
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gokceneraslan
/ dirichlet_test.csv
Created
July 4, 2020 18:10
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| m1 | m2 | m3 | chem | dis | |
|---|---|---|---|---|---|
| 0.2 | 0.2 | 0.6 | v2 | l | |
| 0.2857142857142857 | 0.2857142857142857 | 0.42857142857142855 | v2 | l | |
| 0.0 | 1.0 | 0.0 | v2 | nl | |
| 0.0 | 1.0 | 0.0 | v2 | nl | |
| 0.37894736842105264 | 0.12631578947368421 | 0.49473684210526314 | v3 | l | |
| 0.2054794520547945 | 0.0958904109589041 | 0.6986301369863014 | v3 | nl | |
| 0.16483516483516483 | 0.24175824175824176 | 0.5934065934065934 | v3 | l | |
| 0.12195121951219512 | 0.1951219512195122 | 0.6829268292682927 | v3 | nl | |
| 0.07975460122699386 | 0.10429447852760736 | 0.8159509202453987 | v3 | h |
gokceneraslan
/ allen-cortex-preprocessing.ipynb
Last active
June 4, 2020 23:15
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gokceneraslan
/ GTEx-expression-info.ipynb
Created
April 12, 2020 22:22
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gokceneraslan
/ ot-d2g.py
Created
December 31, 2019 10:32
OpenTargets - Generate flat dataframe from association_data.json file
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| import gzip, json | |
| from pandas.io.json import json_normalize | |
| filename = '19.11_association_data.json.gz' | |
| jlist = json_normalize([json.loads(x) for x in gzip.open(filename, 'rt').read().splitlines()]) | |
| jlist.to_pickle('19.11_association_data.pkl') |
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| import scanpy as sc | |
| # numpy et al. | |
| import numpy as np | |
| import scipy.sparse as sp | |
| import pandas as pd | |
| import gc | |
| # R integration | |
| from rpy2.robjects.packages import importr |
gokceneraslan
/ Untitled1.ipynb
Last active
December 3, 2019 01:52
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gokceneraslan
/ Untitled21.ipynb
Last active
November 24, 2019 20:35
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