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gokceneraslan / dca.ipynb
Created March 27, 2018 10:27
Denoising scRNA-seq using DCA
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gokceneraslan / aba-differential.ipynb
Last active December 24, 2018 03:49
Differential search via ABA API
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gokceneraslan / odensescanpyworkshop.ipynb
Created August 21, 2019 21:31
Scanpy Workshop notebook
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gokceneraslan / scanpyworkshop.ipynb
Created August 21, 2019 21:35
Odense Scanpy Workshop 2019
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gokceneraslan / scanpy_mutual.py
Last active September 8, 2019 01:45
Scanpy mutual kNN graph
from scanpy.neighbors import Neighbors
from anndata import AnnData
from typing import Union, Optional, Any, Mapping, Callable, NamedTuple, Generator, Tuple
from numpy.random import RandomState
import numpy as np
Metric = Callable[[np.ndarray, np.ndarray], float]
import scanpy.logging as logg
N_DCS = 15 # default number of diffusion components
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gokceneraslan / perturbseq.ipynb
Created September 8, 2019 23:17
Perturb-seq preprocessing and visualization using Scanpy
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