Created
September 14, 2016 04:16
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Sufia 7.pre -> Sufia 7.1 Migration Error
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| irb(main):002:0> fs = FileSet.find('gb19f580q') | |
| => #<FileSet id: "gb19f580q", label: "it150815_074300_000.idl", relative_path: "Data/Simulation Output/Ionosphere Output/it150815_...", import_url: nil, part_of: [], resource_type: [], creator: [], contributor: [], description: [], keyword: [], rights: [], publisher: [], date_created: [], subject: [], language: [], identifier: [], based_near: [], related_url: [], bibliographic_citation: [], source: [], head: [], tail: [], depositor: "[email protected]", title: ["it150815_074300_000.idl"], date_uploaded: "2016-04-21 18:49:04", date_modified: "2016-04-21 18:49:04", access_control_id: "10d89226-68ee-4661-afff-9e3056f45e1a", embargo_id: nil, lease_id: nil> | |
| irb(main):003:0> fs.original_file | |
| => #<Hydra::PCDM::File uri="http://localhost:8301/fedora/rest/umrdr/gb/19/f5/80/gb19f580q/files/90e50337-8c1a-4482-9842-3eaa9641fc58" > | |
| irb(main):004:0> fs.characterization_proxy | |
| => #<Hydra::PCDM::File uri="http://localhost:8301/fedora/rest/umrdr/gb/19/f5/80/gb19f580q/files/90e50337-8c1a-4482-9842-3eaa9641fc58" > | |
| irb(main):005:0> fs.characterization_proxy.save | |
| => true | |
| irb(main):006:0> fs.characterization_proxy.save | |
| Ldp::HttpError: STATUS: 500 java.util.NoSuchElementException | |
| at com.google.common.collect.Iterators$1.next(Iterators.java:80) | |
| at org.fcrepo.kernel.modeshape.rdf.impl.mappings.PropertyValueIterator.computeNext(PropertyValueIterator.java:68) | |
| at org.fcrepo.kernel.modeshape.rdf.impl.mappings.PropertyValueIterator.computeNext(PropertyValueIterator.java:35) | |
| at com.google.common.collect.AbstractIterator.tryToComputeNext(AbstractIterator.java:143) | |
| at com.google.common.collect.AbstractIterator.hasNext(AbstractIterator.java:138) | |
| at com.google.common.collect.TransformedIterator.hasNext(TransformedIterator.java:43) | |
| at com.google.common.collect.Iterators$7.computeNext(Iterators.java:650) | |
| at com.google.common.collect.AbstractIterator.tryToComputeNext(AbstractIterator.java:143) | |
| at com.google.common.collect.AbstractIterator.hasNext(AbstractIterator.java:138) | |
| at com.google.common.collect.TransformedIterator.hasNext(TransformedIterator.java:43) | |
| at com.google.common.collect.Iterators$5.hasNext(Iterators.java:547) | |
| at com... | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/ldp-0.5.0/lib/ldp/client/methods.rb:119:in `block in check_for_errors' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/ldp-0.5.0/lib/ldp/client/methods.rb:117:in `tap' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/ldp-0.5.0/lib/ldp/client/methods.rb:117:in `check_for_errors' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/ldp-0.5.0/lib/ldp/client/methods.rb:110:in `block in patch' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/activesupport-4.2.6/lib/active_support/notifications.rb:166:in `instrument' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/ldp-0.5.0/lib/ldp/client/methods.rb:102:in `patch' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/caching_connection.rb:29:in `patch' | |
| from /l/local/rbenv/versions/2.3.0/lib/ruby/2.3.0/delegate.rb:83:in `method_missing' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/initializing_connection.rb:47:in `patch' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/sparql_insert.rb:11:in `execute' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/with_metadata/metadata_node.rb:47:in `save' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/file.rb:167:in `block in create_or_update' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/file.rb:166:in `tap' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/file.rb:166:in `create_or_update' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/with_metadata.rb:22:in `create_or_update' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/active-fedora-10.2.0/lib/active_fedora/persistence.rb:29:in `save' | |
| from (irb):6 | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/railties-4.2.6/lib/rails/commands/console.rb:110:in `start' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/railties-4.2.6/lib/rails/commands/console.rb:9:in `start' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/railties-4.2.6/lib/rails/commands/commands_tasks.rb:68:in `console' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/railties-4.2.6/lib/rails/commands/commands_tasks.rb:39:in `run_command!' | |
| from /hydra/umrdr-production/shared/vendor/bundle/ruby/2.3.0/gems/railties-4.2.6/lib/rails/commands.rb:17:in `<top (required)>' | |
| from bin/rails:4:in `require' |
seems like file_set.original_file.described_by ends up with a value, but fedora doesn't believe that element exists?
Looking at the tomcat logs:
INFO 15:28:21.570 (FedoraLdp) PATCH for 'umrdr/4q/77/fr/35/4q77fr355/files/ff16c2eb-d94e-491e-8133-2e708f9ed811/fcr:metadata'
WARN 15:28:21.573 (PropertyConverter) The namespace of predicate: http://www.w3.org/ns/ldp#NonRDFSource was possibly misinterpreted as: http://www.w3.org/ns/ldp#.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://fedora.info/definitions/v4/repository#Binary was possibly misinterpreted as: http://fedora.info/definitions/v4/repository#.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://www.jcp.org/jcr/mix/1.0mimeType was possibly misinterpreted as: http://www.jcp.org/jcr/mix/1.0.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://pcdm.org/use#OriginalFile was possibly misinterpreted as: http://pcdm.org/use#.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://www.jcp.org/jcr/mix/1.0versionable was possibly misinterpreted as: http://www.jcp.org/jcr/mix/1.0.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://fedora.info/definitions/v4/repository#Resource was possibly misinterpreted as: http://fedora.info/definitions/v4/repository#.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://www.jcp.org/jcr/nt/1.0resource was possibly misinterpreted as: http://www.jcp.org/jcr/nt/1.0.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://pcdm.org/models#File was possibly misinterpreted as: http://pcdm.org/models#.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://www.loc.gov/premis/rdf/v1#hasCreatingApplicationVersion was possibly misinterpreted as: http://www.loc.gov/premis/rdf/v1#.
WARN 15:28:21.574 (PropertyConverter) The namespace of predicate: http://www.loc.gov/premis/rdf/v1#hasFormatName was possibly misinterpreted as: http://www.loc.gov/premis/rdf/v1#.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://www.ebu.ch/metadata/ontologies/ebucore/ebucore#fileSize was possibly misinterpreted as: http://www.ebu.ch/metadata/ontologies/ebucore/ebucore#.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#hashValue was possibly misinterpreted as: http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://www.w3.org/ns/ldp#NonRDFSource was possibly misinterpreted as: http://www.w3.org/ns/ldp#.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://www.jcp.org/jcr/nt/1.0resource was possibly misinterpreted as: http://www.jcp.org/jcr/nt/1.0.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://www.jcp.org/jcr/mix/1.0mimeType was possibly misinterpreted as: http://www.jcp.org/jcr/mix/1.0.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://pcdm.org/models#File was possibly misinterpreted as: http://pcdm.org/models#.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://pcdm.org/use#OriginalFile was possibly misinterpreted as: http://pcdm.org/use#.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://fedora.info/definitions/v4/repository#Binary was possibly misinterpreted as: http://fedora.info/definitions/v4/repository#.
WARN 15:28:21.575 (PropertyConverter) The namespace of predicate: http://fedora.info/definitions/v4/repository#Resource was possibly misinterpreted as: http://fedora.info/definitions/v4/repository#.
WARN 15:28:21.576 (PropertyConverter) The namespace of predicate: http://www.jcp.org/jcr/mix/1.0versionable was possibly misinterpreted as: http://www.jcp.org/jcr/mix/1.0.
INFO 15:28:21.603 (FedoraLdp) HEAD for: umrdr/4q/77/fr/35/4q77fr355/files/ff16c2eb-d94e-491e-8133-2e708f9ed811
INFO 15:28:21.618 (FedoraLdp) HEAD for: umrdr/4q/77/fr/35/4q77fr355/files/ff16c2eb-d94e-491e-8133-2e708f9ed811/fcr:metadata
INFO 15:28:21.632 (FedoraLdp) GET resource 'umrdr/4q/77/fr/35/4q77fr355/files/ff16c2eb-d94e-491e-8133-2e708f9ed811/fcr:metadata'
INFO 15:28:21.635 (WildcardExceptionMapper) Exception intercepted by WildcardExceptionMapper:
java.util.NoSuchElementException: null
... stack trace follows here ....
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Same behavior with any FileSet doing
file_set.original_file.savetwice in a row. Does not happen with a FileSet doingfile_set.savetwice if that's the first thing done with the file set. So I'm thinking it's the PCDM::File.After a file_set is screwed up, anything with save gets the same error.
curling the url gives me the NoSuchElement exception
curl http://localhost:8301/fedora/rest/umrdr/gb/19/f5/80/gb19f580q/files/90e50337-8c1a-4482-9842-3eaa9641fc58/fcr:metadata