Created
April 4, 2022 07:11
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from pathlib import Path | |
def run_neuroscope(spikeextractors_backend): | |
from datetime import datetime | |
from nwb_conversion_tools import NWBConverter, NeuroscopeRecordingInterface | |
file_path = Path( | |
"/home/heberto/globus_data/Buzsaki/TingleyD/DT1/DT1_rLS_20150723_1584um/DT1_rLS_20150723_1584um.dat" | |
) | |
file_path = Path("/home/heberto/ephy_testing_data/neuroscope/test1/test1.dat") | |
stub_test = True | |
nwbfile_path = str(f"./{file_path.stem}_{stub_test=}_{spikeextractors_backend=}.nwb") | |
class TestConverter(NWBConverter): | |
data_interface_classes = dict(NeuroscopeRecording=NeuroscopeRecordingInterface) | |
conversion_options = dict() | |
conversion_options.update( | |
NeuroscopeRecording=dict(stub_test=stub_test, es_key="ElectricalSeries_raw", iterator_opts=dict(buffer_gb=4.0)) | |
) | |
interface_kwargs = dict(file_path=str(file_path), spikeextractors_backend=spikeextractors_backend) | |
converter = TestConverter(source_data=dict(NeuroscopeRecording=interface_kwargs)) | |
metadata = converter.get_metadata() | |
metadata["NWBFile"].update(session_start_time=datetime.now().astimezone().strftime("%Y-%m-%dT%H:%M:%S")) | |
converter.run_conversion( | |
nwbfile_path=nwbfile_path, conversion_options=conversion_options, overwrite=True, metadata=metadata | |
) | |
if __name__ == "__main__": | |
spikeextractors_backend = False | |
run_neuroscope(spikeextractors_backend) |
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