Hadrien Mary hadim

Python Conda Setup

The goal is to install a Python friendly environment on your computer. It works on Linux, Windows and OSX. The base environment will provide you the minimum to be able to start Jupyter and then we will use different Conda environments with all the necessary packages to do analysis. Those environments will then be available as kernels in Jupyter.

Install Anaconda or Miniconda.
- Miniconda is a light version of Anaconda that provide less packages. If you pan to use Conda environments, I would recommend using it.
Open a terminal.
Activate the base Conda environment (also called root):

Compile `ctffind4` on CentOS 8

Instructions to compile ctffind4 on CentOS 8.

Install dependencies

# Enable PowerTools
sudo dnf config-manager --set-enabled PowerTools

	#!/usr/bin/env bash

	# Cuda and friends installation done right.
	# Switch default Cuda version using symbolic link: cuda.switch 9.2
	# Install Cuda: cuda.install.cuda 10.0
	# Install cuDNN to CUDA_HOME: cuda.install.cudnn 7.5
	# Install NCCL to CUDA_HOME: cuda.install.nccl 2.4
	# Install Cuda, cuDNN and NCCL: cuda.install 10.0 7.5 2.4

	# Author: Hadrien Mary <[email protected]>

	#!/usr/bin/env bash
	# Modified from https://gist.github.com/Stono/7e6fed13cfd79598eb15
	#
	# MIT License applies to this script. I don't accept any responsibility for
	# damage you may cause using it.

	set -ex

	if [[ $EUID -ne 0 ]]; then
	echo "* This script needs to be run as root"

	# Install the joblib library if needed.
	# conda install joblib

	import joblib as jb
	import numpy as np


	def my_function_that_take_time(arg1, arg2):

	# Simulate a long computation.

	# A minimal configuration to host a RustDesk server with Traefik v3.
	#
	# This configuration is based on a single Rustdesk container hosting the two hbbr and hbbs services
	# instead of running two separate containers as in the official documentation.
	# See https://rustdesk.com/docs/en/self-host/rustdesk-server-oss/docker/ for more information.
	#
	# Pay attention to the comments in the file and adapt the configuration to your needs.
	# Once deployed you must configure the Rustdesk client in the Network tab to use the domain
	# name of the relay server and the port 21117.
	# ID server: DOMAIN_NAME:21116

Hadrien Mary hadim

Python Conda Setup

Compile ctffind4 on CentOS 8

Install dependencies

Compile `ctffind4` on CentOS 8