Makefile for Sweave with pgfSweave/cacheSweave

Makefile

################################################################################
all:pdf  # default rule DO NOT EDIT
################################################################################
MAINFILE  := main
RNWFILES  := 
RFILES    := 
TEXFILES  := 
CACHEDIR  := cache
FIGUREDIR := figures
DRIVER    := pgfSweave
LATEXMK_FLAGS := 
SWEAVE_OPTS := "pdf=T, eps=T, tikz=F, cache=F"
SWEAVE_CALL_OPTS :=  # prefix with comma `,`
##### Explicit Dependencies #####
$(RFILES): 
################################################################################
RNWTEX = $(RNWFILES:.Rnw=.tex)
ROUTFILES = $(RFILES:.R=.Rout)
MAINRNW = $(MAINFILE:=.Rnw)
MAINTEX = $(MAINFILE:=.tex)
MAINPDF = $(MAINFILE:=.pdf)
ALLTEX = $(MAINTEX) $(RNWTEX) $(TEXFILES)
SWEAVE_OPTS += , prefix.string=$(FIGUREDIR)/fig

# Dependencies
$(MAINTEX): $(RNWTEX) $(TEXFILES) $(MAINRNW)
$(MAINPDF): $(MAINTEX) $(ALLTEX) 

.PHONY:pdf tex clean clearcache cleanall cleanoutputs
pdf: $(MAINPDF)
tex: $(ALLTEX) 

$(CACHEDIR):
	mkdir $(CACHEDIR)
	
$(FIGUREDIR):
	mkdir $(FIGUREDIR)

%.tex:%.Rnw $(CACHEDIR) $(FIGUREDIR)
	Rscript -e "if('$(DRIVER)'!='Sweave'){require($(DRIVER));setCacheDir('$(CACHEDIR)')};Sweave('$<', \
	driver = $(DRIVER)Driver() $(SWEAVE_CALL_OPTS))"

%.R:%.Rnw
	Rscript -e "Sweave('$^', driver=Rtangle())"

%.Rout:%.R
	R CMD BATCH "$^" "$@"

%.pdf:%.tex 
	latexmk -pdf $<
	
clean:
	-latexmk -c -quiet $(MAINFILE).tex
	-rm -f Rplots.pdf $(MAINTEX) $(RNWTEX)
	-rm -rf $(FIGUREDIR)
	-rm -f estimating-discrete.R
	
clearcache:
	-rm -rf cache *.map
	
cleansim:
	-rm -rf *.Rdata

cleanoutputs:
	-latexmk -C -quiet $(MAINFILE).tex

cleanall: cleanoutputs clean clearcache