gistfile1.txt

        FILE *input = fopen(argv[1],"rb");
        FILE *output;
        unsigned short header =0;
        fread(&header,1,sizeof(unsigned short),input);
        if(header == magicNumber){
                rewind(input);
                if(argc==3 && argv[2][0]!='-'){
                        output=fopen(argv[3],"w");
                        handleDecode(input,output);
                        fclose(output);
                        fclose(input);
                }
                else{
                        handleDecode(input,stdout);
                        fclose(input);
                }
        }
        else{
                /*printf("IN ELSE\n");*/
                fclose(input);
                input = fopen(argv[1],"r");

                readFromFile(input);
                fclose(input);

                input = fopen(argv[1],"r");

                Heap mainHeap =populateHeap();
                TreeNode * root = (TreeNode*)removeTopHeap(mainHeap);
                int arr[256];
                getCodes(root,arr,0);
                fclose(input);

                input = fopen(argv[1],"r");
                unsigned int *bitArr =generateBitArrayEncore(input);

                FILE *output = fopen(argv[2],"wb");
                unsigned short magic = 0x80F0;
                fwrite(&magic,1,sizeof(unsigned short),output);
                writeTreeToFile(root,output,0);
                fwrite(&totalBitsUsed, 1, sizeof(unsigned int), output);
                //printf("FINAL PRINT 0,%u\n",bitArr[0]);
                //printf("FINAL PRINT 1,%u\n",bitArr[1]);

                int sizeOfArray = (totalBitsUsed/(sizeof(unsigned int)*8)) + (totalBitsUsed%(sizeof(unsigned int)*8) == 0 ? 0:1);
                /*printf("SIZE OF ARRAY IS %d\n",sizeOfArray);*/
                fwrite(bitArr, sizeOfArray, sizeof(unsigned int), output);
                fclose(output);
                fclose(input);
                destroyHeap(mainHeap);
                freeTree(root);
                free(bitArr);

                /*free(root);*/
        }

return 0;