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# | |
# This is a Shiny web application. You can run the application by clicking | |
# the 'Run App' button above. | |
# | |
# Find out more about building applications with Shiny here: | |
# | |
# http://shiny.rstudio.com/ | |
# | |
library(shiny) |
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epiviz.Config.SETTINGS.dataProviders.push('epiviz.plugins.data.YahooFinanceDataProvider'); |
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epiviz.Config.SETTINGS.chartCustomSettings['epiviz.plugins.charts.LineTrack'].step = 10; |
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library(epivizr) | |
library(rtracklayer) | |
# download example bed file | |
download.file("https://raw.githubusercontent.com/arq5x/bedtools/master/data/aluY.hg19.bed.gz", destfile="test.bed.gz", method="curl") | |
# start UI | |
mgr <- startEpiviz(workspace="mi9NojjqT1l") | |
# import bed file |
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/** | |
* Created by Florin Chelaru ( florinc [at] umd [dot] edu ) | |
* Date: 10/9/13 | |
* Time: 11:13 AM | |
*/ | |
/** | |
* Overrides the default configuration settings for EpiViz | |
*/ | |
epiviz.EpiViz.SETTINGS = { |
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/** | |
* Created by Llewellyn | |
* User: florin | |
* Date: 8/2/13 | |
* Time: | |
* To change this template use File | Settings | File Templates. | |
*/ | |
ExonExpressionTrack.prototype = new LineTrack(); | |
ExonExpressionTrack.prototype.constructor = ExonExpressionTrack; |
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/** | |
* | |
* User: florin | |
* Date: 8/2/13 | |
* Time: | |
* Created by Llewellyn | |
*/ | |
ExonExpressionTrackHandler.prototype = new TrackTypeHandler({ | |
dataTypeHandler: new ProbeDataHandler(), |