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library(rstan) | |
stan_code <- " | |
data { | |
int<lower=0> N; | |
vector[N] y; | |
vector[N] a; | |
vector[N] x1; | |
vector[N] x2; | |
} | |
parameters { | |
vector[N] u; | |
real b_x1; // note potential multimodality due to the switching signs of b_x1 and b_x2 | |
real b_x2; // could use ordered[2] for these... | |
real b_a; | |
real b_ya; | |
real b_yu; | |
real a_x1; | |
real a_x2; | |
real a_a; | |
real a_y; | |
real<lower=0> sigma_x1; | |
real<lower=0> sigma_x2; | |
real<lower=0> sigma_a; | |
real<lower=0> sigma_y; | |
} | |
model { | |
a_x1 ~ normal(0, 1); | |
a_x2 ~ normal(0, 1); | |
a_a ~ normal(0, 1); | |
a_y ~ normal(0, 1); | |
b_x1 ~ normal(0, 1); | |
b_x2 ~ normal(0, 1); | |
b_a ~ normal(0, 1); | |
b_ya ~ normal(0, 1); | |
b_yu ~ normal(0, 1); | |
u ~ normal(0, 1); // prior directly on U | |
x1 ~ normal(a_x1 + b_x1 * u, sigma_x1); | |
x2 ~ normal(a_x2 + b_x2 * u, sigma_x2); | |
a ~ normal(a_a + b_a * u, sigma_a); | |
y ~ normal(a_y + b_ya * a + b_yu * u, sigma_y); | |
} | |
" | |
set.seed(1) | |
n <- 1000 | |
u <- rnorm(n, 0, 1) | |
x1 <- rnorm(n, -u, 1) | |
x2 <- rnorm(n, 2*u, 1) | |
a <- rnorm(n, u, 1) | |
y <- rnorm(n, u + a, 1) | |
fit <- stan(model_code = stan_code, data = tibble::lst(a,y,x1,x2,N=n), pars = "u", include = FALSE, | |
chains = 4, cores = 4, iter = 5000) | |
print(fit) |
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