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June 7, 2015 04:28
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Naive argsort for 1D arrays
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import numpy as np | |
import numba as nb | |
@nb.njit() | |
def partition(values, idxs, left, right): | |
""" | |
Partition method | |
""" | |
piv = values[idxs[left]] | |
i = left + 1 | |
j = right | |
while True: | |
while i <= j and values[idxs[i]] <= piv: | |
i += 1 | |
while j >= i and values[idxs[j]] >= piv: | |
j -= 1 | |
if j <= i: | |
break | |
idxs[i], idxs[j] = idxs[j], idxs[i] | |
idxs[left], idxs[j] = idxs[j], idxs[left] | |
return j | |
@nb.njit() | |
def argsort1D(values): | |
idxs = np.arange(values.shape[0]) | |
left = 0 | |
right = values.shape[0] - 1 | |
max_depth = np.int(right / 2) | |
ndx = 0 | |
tmp = np.zeros((max_depth, 2), dtype=np.int64) | |
tmp[ndx, 0] = left | |
tmp[ndx, 1] = right | |
ndx = 1 | |
while ndx > 0: | |
ndx -= 1 | |
right = tmp[ndx, 1] | |
left = tmp[ndx, 0] | |
piv = partition(values, idxs, left, right) | |
if piv - 1 > left: | |
tmp[ndx, 0] = left | |
tmp[ndx, 1] = piv - 1 | |
ndx += 1 | |
if piv + 1 < right: | |
tmp[ndx, 0] = piv + 1 | |
tmp[ndx, 1] = right | |
ndx += 1 | |
return idxs | |
if __name__ == '__main__': | |
x = np.random.random((100000,)) | |
res = np.argsort(x) | |
out = argsort1D(x) | |
assert np.all(res == out) |
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Depending on the data, might be upto 50% slower than the numpy.argsort version.