hiraksarkar

#!/bin/bash
## This gist contains instructions about cuda v11.2 and cudnn8.1 installation in Ubuntu 20.04 for Pytorch 1.8 & Tensorflow 2.7.0

### steps ####
# verify the system has a cuda-capable gpu
# download and install the nvidia cuda toolkit and cudnn
# setup environmental variables
# verify the installation
###

hiraksarkar

SPC s c remove highlight

**** Files manipulations key bindings
Files manipulation commands (start with ~f~):

| Key Binding | Description                                                    |
|-------------+----------------------------------------------------------------|
| ~SPC f c~   | copy current file to a different location                      |
| ~SPC f C d~ | convert file from unix to dos encoding                         |
| ~SPC f C u~ | convert file from dos to unix encoding                         |

hiraksarkar

1. Clone your fork:

git clone [email protected]:YOUR-USERNAME/YOUR-FORKED-REPO.git

2. Add remote from original repository in your forked repository:

cd into/cloned/fork-repo
git remote add upstream git://github.com/ORIGINAL-DEV-USERNAME/REPO-YOU-FORKED-FROM.git
git fetch upstream

hiraksarkar

Useful Spacemacs commands

• SPC q q - quit
• SPC f e d - open .spacemacs file
• SPC f e R - reload .spacemacs file
• SPC w / - split window vertically
• SPC w - - split window horizontally
• SPC 1 - switch to window 1
• SPC 2 - switch to window 2
• SPC w c - delete current window

hiraksarkar

SAM and BAM filtering one-liners

@author: David Fredman, [email protected] (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/

Please extend with additional/faster/better solutions via a pull request!

BWA mapping (using piping for minimal disk I/O)

hiraksarkar

import argparse

default_prefix = "ftp.sra.ebi.ac.uk/vol1/fastq/"
ascp_prefix = "ftp.sra.ebi.ac.uk:/vol1/fastq/"
default_protocol = "ftp://"
default_suffix = "*.fastq.gz"
default_ascp_line = "ascp -QT -l 300m -i ~/.ssh/asperaweb_id_dsa.openssh [email protected]:{} {}"


def prepare_url(srr_name, prefix):

hiraksarkar

a = [1,4,5,10]
cache = {}
for i in a:
    cache[i] = 1
   
counter = 0
#okay khub bhalo code hoyeche
def coin(x):
   if not x in cache: