Timings for load_bundle

gistfile1.txt

Line #      Hits         Time  Per Hit   % Time  Line Contents
==============================================================
    25                                           def load_bundle(bundle_dir):
    26                                               """
    27                                               Load and return a bundle object from its path.
    28                                               The class of the returned bundle will be introspected
    29                                               from the bundle metadata.
    30
    31                                               This is the preferred method of de-serializing bundles.
    32                                               """
    33
    34                                               # load from a json meta file
    35       107          545      5.1      0.2      meta_fname = os.path.join(bundle_dir, "meta.json")
    36       107         1180     11.0      0.4      if os.path.exists(meta_fname):
    37
    38                                                   # Load meta file (every bundle should have a meta.json)
    39       106         5544     52.3      2.0          meta = json.load(open(meta_fname))
    40
    41                                                   # Get bundle class (e.g., 'iqfeat.bundle.feature.UFLFeatureBundle').
    42                                                   # Every meta.json should have a 'cls' attribute.
    43       106         1615     15.2      0.6          cls = _load_from_module(meta['cls'])
    44
    45                                                   # Call the class method 'load' on bundle's class.
    46       106       158009   1490.7     57.4          obj = cls.load(bundle_dir)
    47
    48       106          130      1.2      0.0          return obj
    49
    50                                               # load from pickle file
    51         1            6      6.0      0.0      pkl_fname = os.path.join(bundle_dir, 'object.pickle')
    52         1           13     13.0      0.0      if os.path.exists(pkl_fname):
    53         1            7      7.0      0.0          from .feature import HiCFeatureBundle
    54         1       108169 108169.0     39.3          return HiCFeatureBundle.load(bundle_dir)