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Error while trying to eb easybuid in a rocks 6.1 (CentOS6.3) machine using Lmod-5.6
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| #easybuild-13.eb | |
| easyblock = 'EB_EasyBuildMeta' | |
| name = 'EasyBuild' | |
| version = '1.13.0' | |
| homepage = 'http://hpcugent.github.com/easybuild/' | |
| description = """EasyBuild is a software build and installation framework | |
| written in Python that allows you to install software in a structured, | |
| repeatable and robust way.""" | |
| toolchain = {'name': 'dummy', 'version': 'dummy'} | |
| source_urls = [ | |
| 'http://pypi.python.org/packages/source/e/easybuild-framework/', | |
| 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', | |
| 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', | |
| ] | |
| # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) | |
| sources = [ | |
| 'easybuild-framework-%(version)s.tar.gz', | |
| 'easybuild-easyblocks-%(version)s.tar.gz', | |
| 'easybuild-easyconfigs-%(version)s.0.tar.gz', | |
| ] | |
| # EasyBuild is a (set of) Python packages, so it depends on Python | |
| # usually, we want to use the system Python, so no actual Python dependency is listed | |
| allow_system_deps = [('Python', SYS_PYTHON_VERSION)] | |
| moduleclass = 'tools' |
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| == 2014-05-30 12:50:30,620 main INFO This is EasyBuild 1.13.0 (framework: 1.13.0, easyblocks: 1.13.0) on host rocks.sn.ehu.es. | |
| == 2014-05-30 12:50:30,622 main INFO Command line: --installpath=/software --modules-tool=Lmod easybuild-13.eb | |
| == 2014-05-30 12:50:30,623 main INFO Using /tmp/easybuild-YjkGq3 as temporary directory | |
| == 2014-05-30 12:50:30,630 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle init with modifications to support oldstyle options | |
| == 2014-05-30 12:50:30,631 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle_init filename /home/inigo/.local/lib/python2.6/site-packages/easybuild/easybuild_config.py kwargs {} | |
| == 2014-05-30 12:50:30,631 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle_read_configuration filename /home/inigo/.local/lib/python2.6/site-packages/easybuild/easybuild_config.py | |
| == 2014-05-30 12:50:30,635 main.config WARNING Deprecated functionality, will no longer work in v2.0: Adapt code to use read_environment from easybuild.tools.utilities and do not use oldstyle environment variables | |
| == 2014-05-30 12:50:30,635 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key build_path usage found, replacing with newkey buildpath | |
| == 2014-05-30 12:50:30,635 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key module_classes usage found, replacing with newkey moduleclasses | |
| == 2014-05-30 12:50:30,636 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key source_path usage found, replacing with newkey sourcepath | |
| == 2014-05-30 12:50:30,636 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key install_path usage found, replacing with newkey installpath | |
| == 2014-05-30 12:50:30,636 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key repository_path usage found, replacing with newkey repositorypath | |
| == 2014-05-30 12:50:30,636 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key log_dir usage found, replacing with newkey tmp_logdir | |
| == 2014-05-30 12:50:30,637 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key log_format usage found, replacing with newkey logfile_format | |
| == 2014-05-30 12:50:30,639 main.Lmod INFO Prepended list of module paths with path used by EasyBuild: /software/modules/all | |
| == 2014-05-30 12:50:30,640 main.Lmod INFO $MODULEPATH set based on list of module paths: /software/modules/all:/software/modulefiles/Linux:/software/modulefiles/Core:/software/lmod/lmod/modulefiles/Core | |
| == 2014-05-30 12:50:30,640 main.filetools INFO Command /software/lmod/lmod/libexec/lmod found at /software/lmod/lmod/libexec/lmod | |
| == 2014-05-30 12:50:30,640 main.Lmod INFO Full path for module command is /software/lmod/lmod/libexec/lmod, so using it | |
| == 2014-05-30 12:50:30,757 main.Lmod INFO Found version 5.6 | |
| == 2014-05-30 12:50:30,806 main.Lmod WARNING Ignoring non-existing module path in $MODULEPATH: /software/modulefiles/Core | |
| == 2014-05-30 12:50:30,807 main.Lmod WARNING Ignoring non-existing module path in $MODULEPATH: /software/modulefiles/Linux | |
| == 2014-05-30 12:50:30,807 main.Lmod WARNING Ignoring non-existing module path in $MODULEPATH: /software/modules/all | |
| == 2014-05-30 12:50:30,860 main.EasyConfig INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2014-05-30 12:50:30,876 main.easyconfig.easyconfig INFO Derived full easyblock module path for EB_EasyBuildMeta: easybuild.easyblocks.easybuildmeta | |
| == 2014-05-30 12:50:30,877 main.easyconfig.easyconfig INFO Successfully obtained class 'EB_EasyBuildMeta' for easyblock 'EB_EasyBuildMeta' (software name 'EasyBuild') | |
| == 2014-05-30 12:50:30,877 main.easyblock.<module> WARNING Deprecated functionality, will no longer work in v2.0: Returning list of tuples rather than a dict as return value of extra_options | |
| == 2014-05-30 12:50:30,877 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: Specified extra_options should be of type 'dict', found type '<type 'list'>' | |
| == 2014-05-30 12:50:30,882 main.easyconfig.format.pyheaderconfigobj WARNING Deprecated functionality, will no longer work in v2.0: Magic 'global' easyconfigs variables like shared_lib_ext should no longer be used | |
| == 2014-05-30 12:50:30,885 main.EasyConfig INFO setting config option toolchain: value {'version': 'dummy', 'name': 'dummy'} (type: <type 'dict'>) | |
| == 2014-05-30 12:50:30,885 main.EasyConfig INFO setting config option moduleclass: value tools (type: <type 'str'>) | |
| == 2014-05-30 12:50:30,885 main.EasyConfig INFO setting config option toolchain: value {'version': 'dummy', 'name': 'dummy'} (type: <type 'dict'>) | |
| == 2014-05-30 12:50:30,886 main.EasyConfig INFO setting config option name: value EasyBuild (type: <type 'str'>) | |
| == 2014-05-30 12:50:30,886 main.EasyConfig INFO setting config option allow_system_deps: value [('Python', '2.6.6')] (type: <type 'list'>) | |
| == 2014-05-30 12:50:30,886 main.easyconfig.easyconfig WARNING Unable to resolve template value easybuild-framework-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'dummy', 'toolchain_version': 'dummy'} | |
| == 2014-05-30 12:50:30,886 main.easyconfig.easyconfig WARNING Unable to resolve template value easybuild-easyblocks-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'dummy', 'toolchain_version': 'dummy'} | |
| == 2014-05-30 12:50:30,887 main.easyconfig.easyconfig WARNING Unable to resolve template value easybuild-easyconfigs-%(version)s.0.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'dummy', 'toolchain_version': 'dummy'} | |
| == 2014-05-30 12:50:30,887 main.easyconfig.easyconfig WARNING Unable to resolve template value easybuild-framework-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'dummy', 'toolchain_version': 'dummy'} | |
| == 2014-05-30 12:50:30,887 main.easyconfig.easyconfig WARNING Unable to resolve template value easybuild-easyblocks-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'dummy', 'toolchain_version': 'dummy'} | |
| == 2014-05-30 12:50:30,887 main.easyconfig.easyconfig WARNING Unable to resolve template value easybuild-easyconfigs-%(version)s.0.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'dummy', 'toolchain_version': 'dummy'} | |
| == 2014-05-30 12:50:30,888 main.EasyConfig INFO setting config option sources: value ['easybuild-framework-%(version)s.tar.gz', 'easybuild-easyblocks-%(version)s.tar.gz', 'easybuild-easyconfigs-%(version)s.0.tar.gz'] (type: <type 'list'>) | |
| == 2014-05-30 12:50:30,888 main.EasyConfig INFO setting config option version: value 1.13.0 (type: <type 'str'>) | |
| == 2014-05-30 12:50:30,888 main.EasyConfig INFO setting config option source_urls: value ['http://pypi.python.org/packages/source/e/easybuild-framework/', 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/'] (type: <type 'list'>) | |
| == 2014-05-30 12:50:30,888 main.EasyConfig INFO setting config option easyblock: value EB_EasyBuildMeta (type: <type 'str'>) | |
| == 2014-05-30 12:50:30,889 main.EasyConfig INFO setting config option homepage: value http://hpcugent.github.com/easybuild/ (type: <type 'str'>) | |
| == 2014-05-30 12:50:30,889 main.EasyConfig INFO setting config option description: value EasyBuild is a software build and installation framework | |
| written in Python that allows you to install software in a structured, | |
| repeatable and robust way. (type: <type 'str'>) | |
| == 2014-05-30 12:50:30,891 main.environment INFO Environment variable EBROOTPYTHON set to Python | |
| == 2014-05-30 12:50:30,891 main.environment INFO Environment variable EBVERSIONPYTHON set to 2.6.6 | |
| == 2014-05-30 12:50:30,892 main.EasyConfig INFO Validating easy block | |
| == 2014-05-30 12:50:30,892 main.EasyConfig INFO Checking OS dependencies | |
| == 2014-05-30 12:50:30,892 main.EasyConfig INFO OS dependencies ok: [] | |
| == 2014-05-30 12:50:30,892 main.EasyConfig INFO Checking skipsteps | |
| == 2014-05-30 12:50:30,892 main.EasyConfig INFO Checking build option lists | |
| == 2014-05-30 12:50:30,893 main.EasyConfig INFO Checking licenses | |
| == 2014-05-30 12:50:30,893 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: Mandatory license not enforced | |
| == 2014-05-30 12:50:30,925 main.Lmod INFO Prepended list of module paths with path used by EasyBuild: /software/modules/all | |
| == 2014-05-30 12:50:30,925 main.Lmod INFO $MODULEPATH set based on list of module paths: /software/modules/all:/software/lmod/5.6/modulefiles/Core:/software/modulefiles/Linux:/software/modulefiles/Core:/software/lmod/lmod/modulefiles/Core | |
| == 2014-05-30 12:50:30,925 main.filetools INFO Command /software/lmod/lmod/libexec/lmod found at /software/lmod/lmod/libexec/lmod | |
| == 2014-05-30 12:50:30,925 main.Lmod INFO Full path for module command is /software/lmod/lmod/libexec/lmod, so using it |
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| # eb easybuild-13.eb --installpath=/software --modules-tool=Lmod | |
| == temporary log file in case of crash /tmp/easybuild-YjkGq3/easybuild-I9alSY.log | |
| (stdout: os.environ['LOADEDMODULES'] = 'lmod/5.6'; | |
| os.environ['MODULEPATH'] = '/software/modules/all:/software/lmod/5.6/modulefiles/Core:/software/modulefiles/Linux:/software/modulefiles/Core:/software/lmod/lmod/modulefiles/Core'; | |
| os.environ['PATH'] = '/software/lmod/lmod/libexec:/home/inigo/.local/bin:/usr/lib64/qt-3.3/bin:/usr/NX/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/home/inigo/bin'; | |
| os.environ['_LMFILES_'] = '/software/lmod/5.6/modulefiles/Core/lmod/5.6.lua'; | |
| os.environ['LOADEDMODULES'] = 'lmod/5.6'; | |
| os.environ['MODULEPATH'] = '/software/modules/all:/software/lmod/5.6/modulefiles/Core:/software/modulefiles/Linux:/software/modulefiles/Core:/software/lmod/lmod/modulefiles/Core'; | |
| os.environ['PATH'] = '/software/lmod/lmod/libexec:/home/inigo/.local/bin:/usr/lib64/qt-3.3/bin:/usr/NX/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/home/inigo/bin'; | |
| os.environ['_LMFILES_'] = '/software/lmod/5.6/modulefiles/Core/lmod/5.6.lua'; | |
| os.environ['_ModuleTable001_'] = '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'; | |
| os.environ['_ModuleTable002_'] = 'YWRPcmRlciJdPTEscHJvcFQ9e30sWyJzaG9ydCJdPSJsbW9kIixbInN0YXR1cyJdPSJhY3RpdmUiLH0sfSxtcGF0aEE9eyIvc29mdHdhcmUvbW9kdWxlcy9hbGwiLCIvc29mdHdhcmUvbG1vZC81LjYvbW9kdWxlZmlsZXMvQ29yZSIsIi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3NvZnR3YXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9MaW51eDovc29mdHdhcmUvbW9kdWxlZmlsZXMvQ29yZTovc29mdHdhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLFsidmVyc2lvbiJdPTIsfQ=='; | |
| os.environ['_ModuleTable_Sz_'] = '2'; | |
| false | |
| , stderr: | |
| Lmod Warning: The environment MODULEPATH has been changed in unexpected ways. | |
| Lmod is unable to use given MODULEPATH. It is using: | |
| "/software/lmod/5.6/modulefiles/Core:/software/modules/all:/software/modulefiles/Linux:/software/modulefiles/Core:/software/lmod/lmod/modulefiles/Core". | |
| Please use "module use ..." to change MODULEPATH instead. | |
| Due to MODULEPATH changes the following have been reloaded: | |
| 1) lmod/5.6 | |
| ) |
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| # cat /etc/redhat-release | |
| CentOS release 6.3 (Final) | |
| # pip install --user easybuild | |
| # export PATH=$HOME/.local/bin:$PATH | |
| # ml lmod/5.6 | |
| # export LMOD_IGNORE_CACHE=1 | |
| # eb easybuild-13.eb --installpath=/software --modules-tool=Lmod | |
| ERROR: Changing environment as dictated by module failed: name 'false' is not defined |
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Can you run this with full debug and logging enabled and paste that here? Also LMOD_IGNORE_CACHE=1 is not needed since 5.2 and EB 1.10 or so as this is set internally in the environment as needed by EB.