sean-smith

Intel oneAPI for AWS ParallelCluster

First setup yum to get the right repo:

tee > /tmp/oneAPI.repo << EOF
[oneAPI]
name=Intel(R) oneAPI repository
baseurl=https://yum.repos.intel.com/oneapi
enabled=1

illusional

# Configure Cromwell to submit jobs to Slurm, including support for Singularity
#
# Author:
#   - Michael Franklin <[email protected]>
#
# History:
#   - 2020-07-23 - Initial + minor fixes to generalise the script
#   - 2024-04-11 - Use bash instead of sh (based on @oneillkza suggestion)
#
# Quickstart:

GuillaumeDerval

# License: MIT

import socket
from slacker import Slacker
import datetime
import time
import threading

SLACK_TOKEN = 'xoxb-00000000000-000000000000-000000000000000000000000'
CHANNEL_NAME = "your-channel-on-slack"

mauler

# Extended python -m http.serve with --username and --password parameters for
# basic auth, based on https://gist.github.com/fxsjy/5465353

from functools import partial
from http.server import SimpleHTTPRequestHandler, test
import base64
import os


class AuthHTTPRequestHandler(SimpleHTTPRequestHandler):

tommarute

#!/bin/bash

set -ex

gcc_ver=$(gcc --version | head -n 1 | awk '{print $3}')

# Install gcc 4.9 devtoolset
if [[ ! "$gcc_ver" =~ 4\.9\.* ]]; then
    sudo yum install epel-release -y
    sudo yum install centos-release-scl -y

adam-garcia

Viridis Color Palette Generator

A simple tool for extracting discrete color palette values from the viridis collection of color palettes.

indraniel

webservice {
  port = 8000
  interface = 0.0.0.0
  instance.name = "reference"
}
 
akka {
  loggers = ["akka.event.slf4j.Slf4jLogger"]
  actor {
    default-dispatcher {

fsteffenhagen

# Input: list of rows with format: "<filesize> filename", e.g.
# filesizes.txt
#######################
# 1000K  file1.txt
# 200M   file2.txt
# 2G     file3.txt
#

# Output:
cat filesizes.txt | numfmt --from=iec | awk 'BEGIN {sum=0} {sum=sum+$1} END {printf "%.0f\n", sum}'

Brainiarc7

Transient compute clustering with GNU Parallel and sshfs:

GNU Parallel is a multipurpose program for running shell commands in parallel, which can often be used to replace shell script loops,find -exec, and find | xargs. It provides the --sshlogin and --sshloginfile options to farm out jobs to multiple hosts, as well as options for sending and retrieving static resources and and per-job input and output files.

For any particular task, however, keeping track of which files need to pushed to and retrieved from the remote hosts is somewhat of a hassle. Furthermore, cancelled or failed runs can leave garbage on the remote hosts, and if input and output files are large, sending them to local disk on the remote hosts is somewhat inefficient.

In a traditional cluster, this problem would be solved by giving all nodes access to a shared filesystem, usually with NFS or something more exotic. However, NFS doesn't wo

SamStudio8

"""
Provides functions for the purpose of parsing a Sun Grid Engine (SGE)
accounting file for job metadata.
"""

__author__ = "Sam Nicholls <[email protected]>"
__copyright__ = "Copyright (c) Sam Nicholls"
__version__ = "0.0.32"
__maintainer__ = "Sam Nicholls <[email protected]>"