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ianmilligan1/gist:d2b7ee09f4a5f09b7119d6d4d8633cf6

Created June 5, 2018 19:35
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auk-error.log
Raw
gistfile1.txt
scala> :paste
// Entering paste mode (ctrl-D to finish)
import io.archivesunleashed._
import io.archivesunleashed.matchbox._
val r = RecordLoader.loadArchives("/mnt/vol1/data_sets/auk_datasets/4532/warcs/*.gz", sc)
.keepValidPages()
.map(r => (r.getCrawlDate, r.getDomain, r.getUrl, RemoveHTML(r.getContentString)))
.saveAsTextFile("/mnt/vol1/derivative_data/auk-test/text")
// Exiting paste mode, now interpreting.
[Stage 1:====> (56 + 12) / 651]2018-06-05 12:23:36,165 [dispatcher-event-loop-0] WARN HeartbeatReceiver - Removing executor driver with no recent heartbeats: 126166 ms exceeds timeout 120000 ms
2018-06-05 12:24:38,222 [heartbeat-receiver-event-loop-thread] WARN NettyRpcEnv - Ignored message: HeartbeatResponse(false)
2018-06-05 12:24:38,222 [driver-heartbeater] WARN NettyRpcEndpointRef - Error sending message [message = Heartbeat(driver,[Lscala.Tuple2;@210a87ee,BlockManagerId(driver, 130.63.180.18, 36435, None))] in 1 attempts
org.apache.spark.rpc.RpcTimeoutException: Futures timed out after [10 seconds]. This timeout is controlled by spark.executor.heartbeatInterval
at org.apache.spark.rpc.RpcTimeout.org$apache$spark$rpc$RpcTimeout$$createRpcTimeoutException(RpcTimeout.scala:48)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:63)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:59)
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:167)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:83)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:102)
at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$reportHeartBeat(Executor.scala:689)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply$mcV$sp(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1951)
at org.apache.spark.executor.Executor$$anon$1.run(Executor.scala:718)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.util.concurrent.TimeoutException: Futures timed out after [10 seconds]
at scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:219)
at scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)
at scala.concurrent.Await$$anonfun$result$1.apply(package.scala:190)
at scala.concurrent.BlockContext$DefaultBlockContext$.blockOn(BlockContext.scala:53)
at scala.concurrent.Await$.result(package.scala:190)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:81)
... 14 more
[Stage 1:====> (56 + 12) / 651]2018-06-05 12:26:17,706 [driver-heartbeater] WARN NettyRpcEndpointRef - Error sending message [message = Heartbeat(driver,[Lscala.Tuple2;@210a87ee,BlockManagerId(driver, 130.63.180.18, 36435, None))] in 2 attempts
org.apache.spark.rpc.RpcTimeoutException: Futures timed out after [10 seconds]. This timeout is controlled by spark.executor.heartbeatInterval
at org.apache.spark.rpc.RpcTimeout.org$apache$spark$rpc$RpcTimeout$$createRpcTimeoutException(RpcTimeout.scala:48)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:63)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:59)
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:167)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:83)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:102)
at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$reportHeartBeat(Executor.scala:689)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply$mcV$sp(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1951)
at org.apache.spark.executor.Executor$$anon$1.run(Executor.scala:718)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.util.concurrent.TimeoutException: Futures timed out after [10 seconds]
at scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:219)
at scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)
at scala.concurrent.Await$$anonfun$result$1.apply(package.scala:190)
at scala.concurrent.BlockContext$DefaultBlockContext$.blockOn(BlockContext.scala:53)
at scala.concurrent.Await$.result(package.scala:190)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:81)
... 14 more
2018-06-05 12:26:17,711 [dispatcher-event-loop-0] ERROR TaskSchedulerImpl - Lost executor driver on localhost: Executor heartbeat timed out after 126166 ms
[Stage 1:====> (56 + 12) / 651]2018-06-05 12:27:58,800 [driver-heartbeater] WARN NettyRpcEndpointRef - Error sending message [message = Heartbeat(driver,[Lscala.Tuple2;@210a87ee,BlockManagerId(driver, 130.63.180.18, 36435, None))] in 3 attempts
org.apache.spark.rpc.RpcTimeoutException: Futures timed out after [10 seconds]. This timeout is controlled by spark.executor.heartbeatInterval
at org.apache.spark.rpc.RpcTimeout.org$apache$spark$rpc$RpcTimeout$$createRpcTimeoutException(RpcTimeout.scala:48)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:63)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:59)
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:167)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:83)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:102)
at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$reportHeartBeat(Executor.scala:689)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply$mcV$sp(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1951)
at org.apache.spark.executor.Executor$$anon$1.run(Executor.scala:718)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.util.concurrent.TimeoutException: Futures timed out after [10 seconds]
at scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:219)
at scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)
at scala.concurrent.Await$$anonfun$result$1.apply(package.scala:190)
at scala.concurrent.BlockContext$DefaultBlockContext$.blockOn(BlockContext.scala:53)
at scala.concurrent.Await$.result(package.scala:190)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:81)
... 14 more
2018-06-05 12:27:58,803 [driver-heartbeater] WARN Executor - Issue communicating with driver in heartbeater
org.apache.spark.SparkException: Error sending message [message = Heartbeat(driver,[Lscala.Tuple2;@210a87ee,BlockManagerId(driver, 130.63.180.18, 36435, None))]
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:119)
at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$reportHeartBeat(Executor.scala:689)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply$mcV$sp(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1951)
at org.apache.spark.executor.Executor$$anon$1.run(Executor.scala:718)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.rpc.RpcTimeoutException: Futures timed out after [10 seconds]. This timeout is controlled by spark.executor.heartbeatInterval
at org.apache.spark.rpc.RpcTimeout.org$apache$spark$rpc$RpcTimeout$$createRpcTimeoutException(RpcTimeout.scala:48)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:63)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:59)
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:167)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:83)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:102)
... 13 more
Caused by: java.util.concurrent.TimeoutException: Futures timed out after [10 seconds]
at scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:219)
at scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)
at scala.concurrent.Await$$anonfun$result$1.apply(package.scala:190)
at scala.concurrent.BlockContext$DefaultBlockContext$.blockOn(BlockContext.scala:53)
at scala.concurrent.Await$.result(package.scala:190)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:81)
... 14 more
2018-06-05 12:29:01,370 [driver-heartbeater] WARN NettyRpcEndpointRef - Error sending message [message = Heartbeat(driver,[Lscala.Tuple2;@6f63e33,BlockManagerId(driver, 130.63.180.18, 36435, None))] in 1 attempts
org.apache.spark.rpc.RpcTimeoutException: Futures timed out after [10 seconds]. This timeout is controlled by spark.executor.heartbeatInterval
at org.apache.spark.rpc.RpcTimeout.org$apache$spark$rpc$RpcTimeout$$createRpcTimeoutException(RpcTimeout.scala:48)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:63)
at org.apache.spark.rpc.RpcTimeout$$anonfun$addMessageIfTimeout$1.applyOrElse(RpcTimeout.scala:59)
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:167)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:83)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:102)
at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$reportHeartBeat(Executor.scala:689)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply$mcV$sp(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:718)
at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1951)
at org.apache.spark.executor.Executor$$anon$1.run(Executor.scala:718)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.util.concurrent.TimeoutException: Futures timed out after [10 seconds]
at scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:219)
at scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)
at scala.concurrent.Await$$anonfun$result$1.apply(package.scala:190)
at scala.concurrent.BlockContext$DefaultBlockContext$.blockOn(BlockContext.scala:53)
at scala.concurrent.Await$.result(package.scala:190)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:81)
... 14 more
[Stage 1:====> (56 + 12) / 651]
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