rmpi_debugging_2_comparison

gistfile1.txt

g@G:~/Documents/pbd$ sudo R CMD INSTALL Rmpi_PROF
* installing to library ‘/home/g/R/x86_64-pc-linux-gnu-library/2.15’
* installing *source* package ‘Rmpi’ ...
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking for mpirun... mpirun
checking for mpiexec... mpiexec
checking for orterun... orterun
checking for sed... /bin/sed
checking for mpicc... mpicc
checking for ompi_info... ompi_info
checking for mpich2version... mpich2version
found sed, mpicc, and ompi_info ...
gcc: error: unrecognized option '--showme:incdirs'
>> TMP_INC_DIRS = 
gcc: error: unrecognized option '--showme:libdirs'
>> TMP_LIB_DIRS = 
I am here /usr/lib/openmpi and it is OpenMPI
Trying to find mpi.h ...
Found in /usr/lib/openmpi/include
Trying to find libmpi.so or libmpich.a ...
Found libmpi in /usr/lib/openmpi/lib
checking for orted... yes
checking for openpty in -lutil... yes
checking for main in -lpthread... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make: Nothing to be done for `all'.
installing to /home/g/R/x86_64-pc-linux-gnu-library/2.15/Rmpi/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (Rmpi)