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@ili3p
Created December 28, 2021 09:13
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Fast Kendall Tau calculation with pytorch.
import torch
import time
from scipy.stats import kendalltau
def kendall(x, y):
n = x.shape[0]
def sub_pairs(x):
return x.expand(n,n).T.sub(x).sign_()
return sub_pairs(x).mul_(sub_pairs(y)).sum().div(n*(n-1))
d = torch.empty(10)
for i in range(10):
x, y = torch.randperm(4000), torch.randperm(4000)
t = time.time_ns()
m = kendall(x,y)
d[i] = (time.time_ns() - t)*1e-6
print(f'{d[i]:.2f}ms')
print(f'{abs(kendalltau(x,y).correlation - m):.9f}')
print(f'AVG {d.mean():.2f}ms')
@BradKML
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BradKML commented Nov 27, 2024

Will there be a version for TensorFlow or pure SciPy replacement? See also https://github.com/pachadotdev/kendallknight

@ili3p
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ili3p commented Dec 2, 2024

There will be no version for TensorFlow.
By pure SciPy replacement you mean replace the current SciPy implementation with this one? If yes, then no.
Otherwise, I do not know what you mean.
Thank you for the link. I think the code at the link is better. I wrote this code 3 years ago, and back then the torch implementation was much faster than SciPy's implementation, at least in my runs. Now, when I run it, the torch implementation is much slower. I do not know what happened, so I suggest to use this code only for the educational values.

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