Ilkay Isik ilkayisik
ilkayisik
/ fsleyes_visualize_map
Last active
March 16, 2020 14:25
fsleyes command to overlay statistical maps and anatomical with defined threshold and colormap
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| root=xxx | |
| subj=01 | |
| path_to_anatomical=${root}/fmriprep/sub-${subj}/anat/sub-${subj}_T1w_preproc.nii.gz | |
| path_to_1stmap=${root}/analysis/sub-${subj}/video/betaseries/inT1/level_2.gfeat_old/cope1.feat/stats/zstat2.nii.gz | |
| path_to_2nd_map=${root}/analysis/sub-${subj}/video/betaseries/inT1/level_2.gfeat/cope1.feat/stats/zstat2.nii.gz | |
| fsleyes ${path_to_anatomical} \ | |
| ${path_to_1stmap} -dr 3 8 -cm blue \ | |
| ${path_to_2nd_map} -dr 3 8 -cm red |
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