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indapa/pileupNamedTuple.py

Created October 23, 2012 16:03
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using a Python namedtuple
Raw
pileupNamedTuple.py
import collections
Pileup = collections.namedtuple('Pileup', ['sample', 'RG', 'alignmentname', 'basecall', 'bq'])
pileupList=[('51_WGA', 'ZFJDLOT83TE', 'D9WJ65M1:224:BB006PABXX:2:21:8481:67213', 'C', 45),
('51_WGA', 'ZFJDLOT83TE', 'D9WJ65M1:224:BB006PABXX:2:21:8481:67214', 'C', 40
)]
pileupList=map(Pileup._make, pileupList)
for p in pileupList:
print p.sample, p.basecall, p.bq
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