protein_hits.jazz

-@protein_hits
  :methods
    .label
    .spot
    .descrption
    .comment_text
  :include
    -comments
    -taggings
      :methods
        .created_at
      -tag
        :only
          .name
          .background
          .foreground
      -tagger
        :only
          .login

protein_hits.rb

      @protein_hits.to_json(:methods =>
                [:label, :spot, :description, :comment_text], 
                :include => {
                  :comments => {
                    :only => [
                      :comment, 
                      :id,
                      :commenter_id], 
                    :methods => [
                      :commenter_name, 
                      :date]}, 
                  :taggings => {
                    :methods => [
                      :created_at], 
                    :include => {
                      :tag => {
                        :only => [
                          :name, 
                          :background, 
                          :foreground]}, 
                      :tagger => {
                        :only => :login}}}})