Skip to content

Instantly share code, notes, and snippets.

@informationsea
Created May 28, 2025 08:47
Show Gist options
  • Save informationsea/fcebe8620e81251e11eb9f1bfdf056cb to your computer and use it in GitHub Desktop.
Save informationsea/fcebe8620e81251e11eb9f1bfdf056cb to your computer and use it in GitHub Desktop.
Canonical trascript extractor
zgrep -E "(MANE Select|RefSeq Select)" GCF_000001405.40_GRCh38.p14_genomic.gtf.gz|sed -e 's/.*transcript_id "\([A-Z0-9._]*\)".*/\1/'|sort -u > canonical.txt
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment