Run ctools popup after page load.

global.js

  Drupal.behaviors.security_questions_popup = {
    attach: function(context, settings) {
      var need_add_questions = Drupal.settings.global.need_add_security_questions;

      if (need_add_questions) {
        $(window).bind('load', function() {
          $('.security_questions_hide_link').click();
        });
      }
    }
  };