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March 29, 2016 01:55
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% cumulative self self total | |
time seconds seconds calls ms/call ms/call name | |
629.76 61567.87 61567.87 51 1207213.14 1656235.29 Array#sort | |
234.24 84468.00 22900.13 1089421708 0.02 0.02 Float#<=> | |
100.00 94244.16 9776.16 64 152752.50 152752.50 Thread#value | |
1.76 94416.63 172.47 151 1142.19 1142.19 IO#close | |
1.75 94587.49 170.86 203 841.67 841.67 File#initialize | |
1.46 94730.61 143.12 4084 35.04 35.04 IO#read | |
0.49 94778.91 48.30 50 966.00 966.00 Zlib::Inflate#inflate | |
0.42 94819.79 40.88 384 106.46 106.46 IO#write | |
0.23 94842.55 22.76 437 52.08 193373.73 Bio::FastQC::Parser#median_sequence_length | |
0.06 94848.38 5.83 7568 0.77 0.95 Zip::Entry#== | |
0.04 94852.63 4.25 200 21.25 21.25 Array#flatten | |
0.04 94856.56 3.93 946 4.15 34.53 Zip::Entry#read_c_dir_entry | |
0.04 94860.32 3.76 50 75.20 124.00 JSON::Ext::Generator::State#generate | |
0.03 94862.84 2.52 1658 1.52 2.90 Array#select | |
0.03 94865.32 2.48 25795 0.10 0.59 Bio::FastQC::Parser#parse | |
0.02 94867.72 2.40 664 3.61 6.90 Mutex#synchronize | |
0.02 94870.04 2.32 25195 0.09 0.09 Kernel#!~ | |
0.02 94872.08 2.04 1362 1.50 1.50 Symbol#to_s | |
0.02 94873.81 1.73 8274 0.21 0.57 Bio::FastQC::Parser#kmer_content | |
0.01 94875.18 1.37 150 9.13 9.13 Hash#values | |
0.01 94876.53 1.35 437 3.09 6.18 Bio::FastQC::Parser#mean_sequence_length | |
0.01 94877.87 1.34 1348 0.99 77642.74 Proc#call | |
0.01 94879.19 1.32 996 1.33 1.48 Zip::DOSTime.parse_binary_dos_format | |
0.01 94880.38 1.19 304 3.91 6.58 ProgressBar::Format::Molecule#lookup_value | |
0.01 94881.41 1.03 1980 0.52 0.52 String#sub | |
0.01 94882.07 0.66 344 1.92 1.95 Time#- | |
0.01 94882.65 0.58 387 1.50 1.50 Array#* | |
0.00 94883.11 0.46 1941 0.24 0.53 Bio::FastQC::Parser#overall_n_content | |
0.00 94883.50 0.39 85242 0.00 0.00 String#encode | |
0.00 94883.80 0.30 996 0.30 0.46 Zip::Entry#initialize | |
0.00 94884.01 0.21 1068 0.20 18.65 Array#map | |
0.00 94884.21 0.20 1176 0.17 0.20 Kernel#dup | |
0.00 94884.36 0.15 7623 0.02 0.06 Bio::FastQC::Parser#per_base_sequence_quality | |
0.00 94884.50 0.14 1570 0.09 18683.08 Array#each | |
0.00 94884.62 0.12 50934 0.00 0.00 Array#first | |
0.00 94884.74 0.12 25521 0.00 0.00 String#split | |
0.00 94884.83 0.09 996 0.09 0.09 Time.local | |
0.00 94884.91 0.08 5082 0.02 0.05 Bio::FastQC::Parser#per_base_n_content | |
0.00 94884.98 0.07 64 1.09 1.09 Thread#initialize | |
0.00 94885.05 0.07 1942 0.04 0.04 Zip::Entry#name_is_directory? | |
0.00 94885.12 0.07 946 0.07 0.14 Zip::Entry#read_c_dir_extra_field | |
0.00 94885.19 0.07 1892 0.04 0.05 Zip::Entry#time | |
0.00 94885.25 0.06 25195 0.00 0.00 String#=~ | |
0.00 94885.31 0.06 1941 0.03 0.12 Bio::FastQC::Parser#overall_mean_quality_score | |
0.00 94885.37 0.06 5700 0.01 0.06 Bio::FastQC::Parser#per_sequence_gc_content | |
0.00 94885.43 0.06 996 0.06 0.16 Zip::EntrySet#glob | |
0.00 94885.49 0.06 3631 0.02 60.59 Class#new | |
0.00 94885.54 0.05 64 0.78 1.88 Thread.new | |
0.00 94885.59 0.05 380 0.13 10.84 ProgressBar::Format::Formatter.process | |
0.00 94885.64 0.05 3111 0.02 0.04 Bio::FastQC::Parser#sequence_length_distribution | |
0.00 94885.69 0.05 1941 0.03 0.15 Bio::FastQC::Parser#overall_median_quality_score | |
0.00 94885.73 0.04 476 0.08 0.11 Array#include? | |
0.00 94885.77 0.04 1192 0.03 0.03 Kernel#initialize_dup | |
0.00 94885.81 0.04 1892 0.02 0.03 Zip::EntrySet#to_key | |
0.00 94885.85 0.04 2541 0.02 0.04 Bio::FastQC::Parser#per_base_sequence_content | |
0.00 94885.89 0.04 1200 0.03 0.07 Bio::FastQC::Parser#sequence_duplication_levels | |
0.00 94885.93 0.04 13260 0.00 0.00 String#to_sym | |
0.00 94885.97 0.04 946 0.04 0.04 Zip::Entry#unpack_c_dir_entry | |
0.00 94886.01 0.04 1942 0.02 0.03 Zip::ExtraField#initialize | |
0.00 94886.05 0.04 468 0.09 384601.52 Parallel.work_in_threads | |
0.00 94886.08 0.03 1200 0.03 0.05 Bio::FastQC::Parser#total_duplicate_percentage | |
0.00 94886.11 0.03 996 0.03 0.03 Zip::Entry#parse_zip64_extra | |
0.00 94886.14 0.03 1892 0.02 0.05 Zip::EntrySet#<< | |
0.00 94886.17 0.03 6026 0.00 0.00 Fixnum#& | |
0.00 94886.20 0.03 3984 0.01 0.01 Fixnum#>> | |
0.00 94886.23 0.03 1418 0.02 0.05 Time.now | |
0.00 94886.26 0.03 996 0.03 0.03 Zip::Entry#check_name | |
0.00 94886.29 0.03 946 0.03 35.07 Zip::Entry.read_c_dir_entry | |
0.00 94886.32 0.03 1418 0.02 0.03 Time#initialize | |
0.00 94886.35 0.03 996 0.03 1.51 Zip::Entry#set_time | |
0.00 94886.37 0.02 152 0.13 0.13 ProgressBar::Progress#percentage_completed | |
0.00 94886.39 0.02 400 0.05 212779.58 Parallel.with_instrumentation | |
0.00 94886.41 0.02 80 0.25 0.38 ProgressBar::Timer#start | |
0.00 94886.43 0.02 157 0.13 10.38 Hash#each | |
0.00 94886.45 0.02 1892 0.01 0.01 Time#to_i | |
0.00 94886.47 0.02 996 0.02 2.76 Zip::EntrySet#each | |
0.00 94886.49 0.02 4780 0.00 0.00 Hash#[] | |
0.00 94886.51 0.02 3782 0.01 0.01 Fixnum#** | |
0.00 94886.53 0.02 2180 0.01 0.43 Bio::FastQC::Parser#per_sequence_quality_scores | |
0.00 94886.55 0.02 5860 0.00 0.00 Float#+ | |
0.00 94886.57 0.02 2938 0.01 0.01 String#chomp | |
0.00 94886.59 0.02 1992 0.01 0.01 Zip::ExtraField#merge | |
0.00 94886.61 0.02 946 0.02 0.02 String#tr | |
0.00 94886.63 0.02 50 0.40 0.40 Zlib::Inflate#initialize | |
0.00 94886.65 0.02 50 0.40 1690071.80 Bio::FastQC::Parser#summary | |
0.00 94886.66 0.01 72 0.14 0.14 ProgressBar::Progress#none? | |
0.00 94886.67 0.01 80 0.13 0.25 ProgressBar::Components::Time#elapsed | |
0.00 94886.68 0.01 1096 0.01 0.09 Zip::EntrySet#initialize | |
0.00 94886.69 0.01 946 0.01 0.01 Zip::Entry#check_c_dir_entry_comment_size | |
0.00 94886.70 0.01 344 0.03 0.03 Numeric#quo | |
0.00 94886.71 0.01 946 0.01 0.01 Zip::Entry#check_c_dir_entry_signature | |
0.00 94886.72 0.01 50 0.20 100.00 Zip::Entry#read_local_entry | |
0.00 94886.73 0.01 996 0.01 8.89 Zip::File#commit_required? | |
0.00 94886.74 0.01 76 0.13 0.26 ProgressBar::Components::Bar#standard_complete_string | |
0.00 94886.75 0.01 600 0.02 0.02 Float#to_s | |
0.00 94886.76 0.01 996 0.01 0.01 Zip::Entry#set_default_vars_values | |
0.00 94886.77 0.01 50 0.20 0.40 Zip::ExtraField#to_local_bin | |
0.00 94886.78 0.01 50 0.20 121.80 Array#== | |
0.00 94886.79 0.01 3782 0.00 0.00 Float#to_f | |
0.00 94886.80 0.01 516 0.02 0.02 File.join | |
0.00 94886.81 0.01 1259 0.01 0.01 Module#=== | |
0.00 94886.82 0.01 63 0.16 0.16 Rake::Task.define_task | |
0.00 94886.83 0.01 51 0.20 0.78 Rake::DSL#directory | |
0.00 94886.84 0.01 3 3.33 3.33 Rake::TaskManager#lookup | |
0.00 94886.85 0.01 1176 0.01 0.01 String#== | |
0.00 94886.86 0.01 344 0.03 2.01 ProgressBar::Timer#elapsed_seconds | |
0.00 94886.87 0.01 148 0.07 0.07 ProgressBar::Timer#divide_seconds | |
0.00 94886.88 0.01 152 0.07 0.20 ProgressBar::Components::Bar#completed_length | |
0.00 94886.89 0.01 76 0.13 27.63 ProgressBar::Base#to_s | |
0.00 94886.90 0.01 204 0.05 10.59 ProgressBar::Throttle#choke | |
0.00 94886.91 0.01 51 0.20 2.16 Quanto::Records::Summary.list_not_yet_summarized | |
0.00 94886.92 0.01 200 0.05 0.05 Quanto::Records::Summary.summary_file_dir | |
0.00 94886.93 0.01 50 0.20 0.60 Quanto::Records::Summary.summary_exist? | |
0.00 94886.94 0.01 200 0.05 0.10 FileUtils#fu_check_options | |
0.00 94886.95 0.01 50 0.20 0.20 Dir.mkdir | |
0.00 94886.96 0.01 946 0.01 0.07 Zip::Entry#set_ftype_from_c_dir_entry | |
0.00 94886.97 0.01 996 0.01 66.76 Zip::CentralDirectory#read_central_directory_entries | |
0.00 94886.98 0.01 996 0.01 0.55 Zip::EntrySet#dup | |
0.00 94886.99 0.01 600 0.02 0.08 Bio::FastQC::Parser#per_tile_sequence_quality | |
0.00 94887.00 0.01 2414 0.00 0.00 Fixnum#+ | |
0.00 94887.01 0.01 1900 0.01 0.01 Kernel#class | |
0.00 94887.02 0.01 102 0.10 2696.96 Kernel#open | |
0.00 94887.03 0.01 304 0.03 0.03 ProgressBar::Format::Molecule#full_key | |
0.00 94887.04 0.01 76 0.13 9.08 ProgressBar::Components::Time#estimated_with_friendly_oob | |
0.00 94887.05 0.01 76 0.13 0.66 ProgressBar::Components::Bar#complete_bar | |
0.00 94887.06 0.01 1471 0.01 0.01 String#to_s | |
0.00 94887.07 0.01 69 0.14 5.51 Enumerable#map | |
0.00 94887.08 0.01 408 0.02 5.34 ProgressBar::Base#update_progress | |
0.00 94887.09 0.01 314 0.03 0.03 Fixnum#to_s | |
0.00 94887.10 0.01 528 0.02 2.33 Parallel::JobFactory#next | |
0.00 94887.11 0.01 50 0.20 0.20 Zip::CentralDirectory#read_e_o_c_d | |
0.00 94887.12 0.01 946 0.01 0.01 Zip::Entry#check_c_dir_entry_static_header_length | |
0.00 94887.13 0.01 50 0.20 665.00 Integer#times | |
0.00 94887.14 0.01 50 0.20 0.80 Zip::InputStream#get_decompressor | |
0.00 94887.15 0.01 946 0.01 0.03 Zip::DOSTime#dos_equals | |
0.00 94887.16 0.01 1666 0.01 0.02 Bio::FastQC::Parser#overrepresented_sequences | |
0.00 94887.17 0.01 4004 0.00 0.00 Float#/ | |
0.00 94887.18 0.01 420 0.02 0.05 ProgressBar::Time.now | |
0.00 94887.19 0.01 76 0.13 27.76 ProgressBar::Output#print_and_flush | |
0.00 94887.20 0.01 101 0.10 404.85 IO#puts | |
0.00 94887.21 0.01 1892 0.01 0.01 Zip::Entry#to_s | |
0.00 94887.22 0.01 50 0.20 0.20 Zip::ExtraField#ordered_values | |
0.00 94887.23 0.01 2094 0.00 0.00 String#to_i | |
0.00 94887.24 0.01 50 0.20 0.20 Bio::FastQC::Parser#percent_gc | |
0.00 94887.25 0.01 50 0.20 0.20 Bio::FastQC::Parser#min_length | |
0.00 94887.26 0.01 200 0.05 425531.45 Parallel.call_with_index | |
0.00 94887.26 0.00 1 0.00 0.00 TracePoint#enable | |
0.00 94887.26 0.00 1 0.00 0.00 Kernel#__dir__ | |
0.00 94887.26 0.00 1 0.00 0.00 File.expand_path | |
0.00 94887.26 0.00 1 0.00 0.00 Dir.[] | |
0.00 94887.26 0.00 6 0.00 0.00 IO#set_encoding | |
0.00 94887.26 0.00 108 0.00 0.00 Kernel#kind_of? | |
0.00 94887.26 0.00 295 0.00 0.00 Kernel#respond_to? | |
0.00 94887.26 0.00 85 0.00 0.00 String#to_str | |
0.00 94887.26 0.00 78 0.00 0.00 Rake.application | |
0.00 94887.26 0.00 7 0.00 0.00 Rake::LinkedList#initialize | |
0.00 94887.26 0.00 950 0.00 0.00 Kernel#initialize_copy | |
0.00 94887.26 0.00 4 0.00 0.00 Rake::NameSpace#initialize | |
0.00 94887.26 0.00 11 0.00 0.00 #<Object:0x007fad45da7f10>.[] | |
0.00 94887.26 0.00 270 0.00 0.00 Array#last | |
0.00 94887.26 0.00 1966 0.00 0.00 Kernel#is_a? | |
0.00 94887.26 0.00 64 0.00 0.00 Array#shift | |
0.00 94887.26 0.00 63 0.00 0.00 Rake::TaskManager#resolve_args_without_dependencies | |
0.00 94887.26 0.00 70 0.00 0.00 Rake::TaskManager#resolve_args | |
0.00 94887.26 0.00 56 0.00 0.00 Module#ancestors | |
0.00 94887.26 0.00 194 0.00 0.00 Kernel#respond_to_missing? | |
0.00 94887.26 0.00 78 0.00 0.00 Rake.from_pathname | |
0.00 94887.26 0.00 56 0.00 0.00 Rake::FileTask.scope_name | |
0.00 94887.26 0.00 381 0.00 0.00 BasicObject#initialize | |
0.00 94887.26 0.00 38 0.00 0.00 Mutex#initialize | |
0.00 94887.26 0.00 30 0.00 0.00 MonitorMixin#mon_initialize | |
0.00 94887.26 0.00 30 0.00 0.00 MonitorMixin#initialize | |
0.00 94887.26 0.00 28 0.00 0.00 Rake::TaskManager#current_scope | |
0.00 94887.26 0.00 28 0.00 0.00 Rake::Task#initialize | |
0.00 94887.26 0.00 63 0.00 0.00 Rake::TaskManager#intern | |
0.00 94887.26 0.00 63 0.00 0.00 Array#| | |
0.00 94887.26 0.00 213 0.00 0.00 Kernel#block_given? | |
0.00 94887.26 0.00 63 0.00 0.00 Rake::Task#enhance | |
0.00 94887.26 0.00 78 0.00 0.00 Rake::TaskManager#define_task | |
0.00 94887.26 0.00 51 0.00 0.20 Rake::DSL#file_create | |
0.00 94887.26 0.00 7 0.00 0.00 BasicObject#== | |
0.00 94887.26 0.00 11 0.00 0.00 Fixnum#== | |
0.00 94887.26 0.00 57 0.00 130.88 BasicObject#!= | |
0.00 94887.26 0.00 44 0.00 0.00 File.dirname | |
0.00 94887.26 0.00 7 0.00 2.86 Rake.each_dir_parent | |
0.00 94887.26 0.00 1 0.00 0.00 Quanto::Records.set_number_of_parallels | |
0.00 94887.26 0.00 1 0.00 0.00 Quanto::Records::IO.set_number_of_parallels | |
0.00 94887.26 0.00 1 0.00 0.00 Quanto::Records::SRA.set_number_of_parallels | |
0.00 94887.26 0.00 1 0.00 0.00 Quanto::Records::FastQC.set_number_of_parallels | |
0.00 94887.26 0.00 7 0.00 0.00 Array#pop | |
0.00 94887.26 0.00 14 0.00 0.00 Rake::TaskManager#resolve_args_with_dependencies | |
0.00 94887.26 0.00 9 0.00 0.00 Rake::LinkedList#empty? | |
0.00 94887.26 0.00 16 0.00 0.00 Rake::Scope#path | |
0.00 94887.26 0.00 8 0.00 0.00 Rake::LinkedList::EmptyLinkedList#empty? | |
0.00 94887.26 0.00 8 0.00 0.00 Rake::LinkedList#each | |
0.00 94887.26 0.00 8 0.00 0.00 Array#reverse | |
0.00 94887.26 0.00 108 0.00 0.09 Array#join | |
0.00 94887.26 0.00 8 0.00 0.00 Rake::Scope#path_with_task_name | |
0.00 94887.26 0.00 7 0.00 0.00 Rake::Task.scope_name | |
0.00 94887.26 0.00 7 0.00 0.00 Rake::DSL#task | |
0.00 94887.26 0.00 5 0.00 0.00 Rake::DSL#file | |
0.00 94887.26 0.00 9 0.00 2172518.89 nil# | |
0.00 94887.26 0.00 4 0.00 5.00 Rake::TaskManager#in_namespace | |
0.00 94887.26 0.00 4 0.00 5.00 Rake::DSL#namespace | |
0.00 94887.26 0.00 3 0.00 6.67 Kernel#load | |
0.00 94887.26 0.00 4184 0.00 0.00 Fixnum#divmod | |
0.00 94887.26 0.00 2 0.00 0.00 Time#strftime | |
0.00 94887.26 0.00 1 0.00 0.00 Module#method_added | |
0.00 94887.26 0.00 7 0.00 0.00 Kernel#require | |
0.00 94887.26 0.00 1 0.00 0.00 Quanto::Records::Summary.set_number_of_parallels | |
0.00 94887.26 0.00 3 0.00 0.00 Rake::DSL#desc | |
0.00 94887.26 0.00 17 0.00 0.00 Rake::Application#options | |
0.00 94887.26 0.00 1 0.00 0.00 #<OpenStruct:0x007fad45d54c98>.trace_output | |
0.00 94887.26 0.00 1 0.00 0.00 #<OpenStruct:0x007fad45d54c98>.rakelib | |
0.00 94887.26 0.00 77 0.00 0.00 String#gsub | |
0.00 94887.26 0.00 1 0.00 0.00 Dir.glob | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::FileList.glob | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::Application#glob | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::Application#raw_load_rakefile | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::Application#load_imports | |
0.00 94887.26 0.00 16 0.00 0.00 Symbol#id2name | |
0.00 94887.26 0.00 16 0.00 0.00 String#chomp! | |
0.00 94887.26 0.00 16 0.00 0.00 OpenStruct#method_missing | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::Application#parse_task_string | |
0.00 94887.26 0.00 3 0.00 0.00 Rake::Scope::EmptyScope#path_with_task_name | |
0.00 94887.26 0.00 7 0.00 0.00 Rake::TaskManager#lookup_in_scope | |
0.00 94887.26 0.00 3 0.00 0.00 Kernel#loop | |
0.00 94887.26 0.00 3 0.00 3.33 Rake::TaskManager#[] | |
0.00 94887.26 0.00 3 0.00 0.00 Rake::Task#arg_names | |
0.00 94887.26 0.00 11 0.00 10.91 Enumerable#each_with_index | |
0.00 94887.26 0.00 3 0.00 0.00 Rake::TaskArguments#initialize | |
0.00 94887.26 0.00 3 0.00 0.00 Rake::LinkedList.cons | |
0.00 94887.26 0.00 2 0.00 0.00 Rake::LinkedList::EmptyLinkedList.cons | |
0.00 94887.26 0.00 3 0.00 0.00 Rake::LinkedList#conj | |
0.00 94887.26 0.00 2 0.00 0.00 Rake::InvocationChain::EmptyInvocationChain#append | |
0.00 94887.26 0.00 3 0.00 0.00 Rake::InvocationChain.append | |
0.00 94887.26 0.00 12 0.00 0.00 Thread.current | |
0.00 94887.26 0.00 4 0.00 0.00 Mutex#lock | |
0.00 94887.26 0.00 4 0.00 0.00 MonitorMixin#mon_enter | |
0.00 94887.26 0.00 4 0.00 0.00 Rake::Task#prerequisite_tasks | |
0.00 94887.26 0.00 4 0.00 0.00 Rake::Task#invoke_prerequisites | |
0.00 94887.26 0.00 2 0.00 0.00 Rake::Task#needed? | |
0.00 94887.26 0.00 2 0.00 0.00 Proc#arity | |
0.00 94887.26 0.00 1 0.00 10.00 Rake::Task.[] | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::Task#lookup_prerequisite | |
0.00 94887.26 0.00 1 0.00 0.00 Array#[] | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::TaskArguments#extras | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::TaskArguments#new_scope | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::InvocationChain::EmptyInvocationChain#member? | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::InvocationChain#member? | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::InvocationChain#append | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::Task#name | |
0.00 94887.26 0.00 52 0.00 0.00 File.exist? | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::FileCreationTask#needed? | |
0.00 94887.26 0.00 6 0.00 6517543.33 Rake::Task#invoke_with_call_chain | |
0.00 94887.26 0.00 4 0.00 0.00 MonitorMixin#mon_check_owner | |
0.00 94887.26 0.00 4 0.00 0.00 Mutex#unlock | |
0.00 94887.26 0.00 4 0.00 0.00 MonitorMixin#mon_exit | |
0.00 94887.26 0.00 4 0.00 4888157.50 MonitorMixin#mon_synchronize | |
0.00 94887.26 0.00 1 0.00 0.00 IO#readlines | |
0.00 94887.26 0.00 51 0.00 0.00 Quanto::Records::Summary.zip_path_list | |
0.00 94887.26 0.00 4 0.00 0.00 Parallel::JobFactory#queue_wrapper | |
0.00 94887.26 0.00 4 0.00 0.00 Array#to_a | |
0.00 94887.26 0.00 4 0.00 0.00 Parallel::JobFactory#initialize | |
0.00 94887.26 0.00 540 0.00 0.00 Parallel::JobFactory#producer? | |
0.00 94887.26 0.00 276 0.00 0.00 Parallel::JobFactory#size | |
0.00 94887.26 0.00 5 0.00 0.00 Fixnum#<=> | |
0.00 94887.26 0.00 4 0.00 0.00 Enumerable#min | |
0.00 94887.26 0.00 116 0.00 0.00 Hash#initialize_copy | |
0.00 94887.26 0.00 16 0.00 0.00 Hash#merge | |
0.00 94887.26 0.00 232 0.00 0.00 Hash#fetch | |
0.00 94887.26 0.00 8 0.00 0.00 ProgressBar::Timer#initialize | |
0.00 94887.26 0.00 107 0.00 0.00 NilClass#nil? | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Progress#total= | |
0.00 94887.26 0.00 208 0.00 0.00 ProgressBar::Progress#absolute | |
0.00 94887.26 0.00 703 0.00 0.00 Fixnum#* | |
0.00 94887.26 0.00 208 0.00 0.00 ProgressBar::Calculators::RunningAverage.calculate | |
0.00 94887.26 0.00 208 0.00 0.00 ProgressBar::Progress#progress= | |
0.00 94887.26 0.00 8 0.00 0.00 ProgressBar::Progress#start | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Progress#initialize | |
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0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Components::Bar#initialize | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Components::Percentage#initialize | |
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0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Components::Rate#initialize | |
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0.00 94887.26 0.00 4 0.00 0.00 IO#tty? | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Calculators::Length#length_override= | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Calculators::Length#initialize | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Throttle#initialize | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Output#initialize | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Output.detect | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Outputs::Tty#resolve_format | |
0.00 94887.26 0.00 4 0.00 0.00 String#initialize | |
0.00 94887.26 0.00 80 0.00 0.00 ProgressBar::Calculators::Length#unix? | |
0.00 94887.26 0.00 80 0.00 0.00 IO.console | |
0.00 94887.26 0.00 80 0.00 0.00 IO#winsize | |
0.00 94887.26 0.00 80 0.00 0.00 ProgressBar::Calculators::Length#dynamic_width | |
0.00 94887.26 0.00 80 0.00 0.00 ProgressBar::Calculators::Length#terminal_width | |
0.00 94887.26 0.00 80 0.00 0.00 ProgressBar::Calculators::Length#calculate_length | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Calculators::Length#reset_length | |
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0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Output#clear_string | |
0.00 94887.26 0.00 84 0.00 0.00 IO#print | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Outputs::Tty#clear | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Base#clear | |
0.00 94887.26 0.00 428 0.00 0.00 ProgressBar::Timer#stopped? | |
0.00 94887.26 0.00 1 0.00 0.00 ProgressBar::Time.time_mocking_library_methods | |
0.00 94887.26 0.00 423 0.00 0.00 ProgressBar::Time.unmocked_time_method | |
0.00 94887.26 0.00 1 0.00 0.00 Enumerable#find | |
0.00 94887.26 0.00 552 0.00 0.00 ProgressBar::Progress#finished? | |
0.00 94887.26 0.00 476 0.00 0.00 ProgressBar::Base#finished? | |
0.00 94887.26 0.00 280 0.00 0.00 ProgressBar::Base#stopped? | |
0.00 94887.26 0.00 288 0.00 0.00 ProgressBar::Timer#started? | |
0.00 94887.26 0.00 76 0.00 0.00 ProgressBar::Timer#reset | |
0.00 94887.26 0.00 76 0.00 0.26 ProgressBar::Timer#restart | |
0.00 94887.26 0.00 76 0.00 0.00 ProgressBar::Calculators::Length#length_changed? | |
0.00 94887.26 0.00 76 0.00 0.00 ProgressBar::Output#length | |
0.00 94887.26 0.00 76 0.00 0.00 String#initialize_copy | |
0.00 94887.26 0.00 16 0.00 0.00 String#[] | |
0.00 94887.26 0.00 16 0.00 0.00 ProgressBar::Format::Molecule#initialize | |
0.00 94887.26 0.00 24 0.00 0.00 ProgressBar::Format::String#molecules | |
0.00 94887.26 0.00 4 0.00 0.00 String#scan | |
0.00 94887.26 0.00 12 0.00 0.00 Symbol#to_proc | |
0.00 94887.26 0.00 336 0.00 0.15 ProgressBar::Format::Molecule#bar_molecule? | |
0.00 94887.26 0.00 16 0.00 0.00 ProgressBar::Format::Molecule#non_bar_molecule? | |
0.00 94887.26 0.00 76 0.00 0.00 ProgressBar::Format::String#non_bar_molecules | |
0.00 94887.26 0.00 430 0.00 0.00 String#gsub! | |
0.00 94887.26 0.00 548 0.00 0.00 Kernel#nil? | |
0.00 94887.26 0.00 148 0.00 0.00 ProgressBar::Progress#unknown? | |
0.00 94887.26 0.00 72 0.00 0.00 Float#zero? | |
0.00 94887.26 0.00 72 0.00 9.44 ProgressBar::Components::Time#estimated | |
0.00 94887.26 0.00 72 0.00 9.44 ProgressBar::Components::Time#estimated_with_label | |
0.00 94887.26 0.00 76 0.00 8.95 ProgressBar::Components::Time#estimated_with_elapsed_fallback | |
0.00 94887.26 0.00 344 0.00 0.00 Fixnum#- | |
0.00 94887.26 0.00 344 0.00 0.00 Fixnum#fdiv | |
0.00 94887.26 0.00 80 0.00 0.00 Float#floor | |
0.00 94887.26 0.00 80 0.00 0.13 ProgressBar::Timer#elapsed_whole_seconds | |
0.00 94887.26 0.00 148 0.00 0.00 String#% | |
0.00 94887.26 0.00 80 0.00 0.25 ProgressBar::Components::Time#elapsed_with_label | |
0.00 94887.26 0.00 76 0.00 0.00 String#length | |
0.00 94887.26 0.00 76 0.00 0.00 ProgressBar::Format::String#displayable_length | |
0.00 94887.26 0.00 80 0.00 0.00 ProgressBar::Format::String#bar_molecules | |
0.00 94887.26 0.00 76 0.00 0.00 ProgressBar::Format::String#bar_molecule_placeholder_length | |
0.00 94887.26 0.00 220 0.00 0.00 Fixnum#zero? | |
0.00 94887.26 0.00 202 0.00 0.00 Integer#to_i | |
0.00 94887.26 0.00 152 0.00 0.00 Integer#floor | |
0.00 94887.26 0.00 76 0.00 0.26 ProgressBar::Components::Bar#incomplete_string | |
0.00 94887.26 0.00 76 0.00 0.53 ProgressBar::Components::Bar#to_s | |
0.00 94887.26 0.00 76 0.00 27.63 ProgressBar::Outputs::Tty#bar_update_string | |
0.00 94887.26 0.00 76 0.00 0.00 ProgressBar::Outputs::Tty#eol | |
0.00 94887.26 0.00 76 0.00 0.00 String#+ | |
0.00 94887.26 0.00 76 0.00 0.00 IO#flush | |
0.00 94887.26 0.00 280 0.00 15.25 ProgressBar::Output#refresh | |
0.00 94887.26 0.00 204 0.00 10.64 ProgressBar::Output#with_refresh | |
0.00 94887.26 0.00 4 0.00 5.00 ProgressBar::Base#start | |
0.00 94887.26 0.00 4 0.00 5.00 ProgressBar::Base#initialize | |
0.00 94887.26 0.00 4 0.00 5.00 ProgressBar.create | |
0.00 94887.26 0.00 204 0.00 10.69 Parallel.add_progress_bar! | |
0.00 94887.26 0.00 4 0.00 0.00 Parallel.extract_count_from_options | |
0.00 94887.26 0.00 4 0.00 0.00 Array#initialize | |
0.00 94887.26 0.00 132 0.00 718843.33 Parallel.in_threads | |
0.00 94887.26 0.00 4 0.00 30.00 Enumerator#each | |
0.00 94887.26 0.00 54 0.00 181040.00 Array#map! | |
0.00 94887.26 0.00 4 0.00 0.00 Parallel.handle_exception | |
0.00 94887.26 0.00 4 0.00 2444075.00 Parallel.map | |
0.00 94887.26 0.00 601 0.00 0.00 Array#compact | |
0.00 94887.26 0.00 51 0.00 4.31 Quanto::Records::Summary.summary_process_list | |
0.00 94887.26 0.00 52 0.00 1.35 Quanto::Records::Summary.create_list | |
0.00 94887.26 0.00 151 0.00 0.00 IO#closed? | |
0.00 94887.26 0.00 1 0.00 9776310.00 Quanto::Records::Summary.summarize | |
0.00 94887.26 0.00 4 0.00 9776315.00 Rake::Task#execute | |
0.00 94887.26 0.00 2 0.00 9776315.00 Rake::Task#invoke | |
0.00 94887.26 0.00 1 0.00 9776320.00 Rake::Application#invoke_task | |
0.00 94887.26 0.00 3 0.00 9776320.00 Rake::Application#top_level | |
0.00 94887.26 0.00 1 0.00 0.00 Etc.nprocessors | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::CpuCounter#count | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::CpuCounter#count_with_default | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::CpuCounter.count | |
0.00 94887.26 0.00 1 0.00 0.00 Rake.suggested_thread_count | |
0.00 94887.26 0.00 1 0.00 0.00 Enumerable#max | |
0.00 94887.26 0.00 1 0.00 0.00 Hash#initialize | |
0.00 94887.26 0.00 1 0.00 0.00 Set#initialize | |
0.00 94887.26 0.00 1 0.00 0.00 Thread::Queue#initialize | |
0.00 94887.26 0.00 1 0.00 0.00 Thread::ConditionVariable#initialize | |
0.00 94887.26 0.00 1 0.00 0.00 MonitorMixin::ConditionVariable#initialize | |
0.00 94887.26 0.00 1 0.00 0.00 MonitorMixin#new_cond | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::ThreadPool#initialize | |
0.00 94887.26 0.00 1 0.00 0.00 Rake::Application#thread_pool | |
0.00 94887.26 0.00 2 0.00 0.00 Rake::ThreadPool#stat | |
0.00 94887.26 0.00 1 0.00 0.00 Set#empty? | |
0.00 94887.26 0.00 2 0.00 0.00 Rake::ThreadPool#join | |
0.00 94887.26 0.00 1 0.00 9776320.00 Rake::Application#run_with_threads | |
0.00 94887.26 0.00 1 0.00 0.00 TracePoint#disable | |
0.00 94887.26 0.00 150 0.00 0.00 Quanto::Records::Summary.path2fileid | |
0.00 94887.26 0.00 400 0.00 0.00 String#slice | |
0.00 94887.26 0.00 150 0.00 0.13 Quanto::Records::Summary.summary_file_path | |
0.00 94887.26 0.00 200 0.00 0.00 ProgressBar::Progress#increment | |
0.00 94887.26 0.00 200 0.00 10.80 ProgressBar::Base#increment | |
0.00 94887.26 0.00 68 0.00 0.00 Fixnum#/ | |
0.00 94887.26 0.00 68 0.00 0.00 Float#- | |
0.00 94887.26 0.00 68 0.00 0.00 Float#round | |
0.00 94887.26 0.00 68 0.00 9.71 ProgressBar::Components::Time#estimated_seconds_remaining | |
0.00 94887.26 0.00 4 0.00 0.00 ProgressBar::Timer#stop | |
0.00 94887.26 0.00 150 0.00 0.00 Hash#delete | |
0.00 94887.26 0.00 50 0.00 0.00 File.path | |
0.00 94887.26 0.00 100 0.00 0.00 FileUtils#fu_list | |
0.00 94887.26 0.00 100 0.00 0.00 FileUtils#remove_tailing_slash | |
0.00 94887.26 0.00 150 0.00 0.27 FileUtils#mkdir_p | |
0.00 94887.26 0.00 50 0.00 0.00 Exception#initialize | |
0.00 94887.26 0.00 50 0.00 0.00 SystemCallError#initialize | |
0.00 94887.26 0.00 50 0.00 0.00 Exception#exception | |
0.00 94887.26 0.00 50 0.00 0.00 Exception#backtrace | |
0.00 94887.26 0.00 50 0.00 0.20 FileUtils#fu_mkdir | |
0.00 94887.26 0.00 50 0.00 0.00 SystemCallError.=== | |
0.00 94887.26 0.00 50 0.00 0.00 File.directory? | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::CentralDirectory#initialize | |
0.00 94887.26 0.00 50 0.00 0.00 File.size? | |
0.00 94887.26 0.00 50 0.00 0.00 File.stat | |
0.00 94887.26 0.00 50 0.00 0.00 File::Stat#mode | |
0.00 94887.26 0.00 100 0.00 0.00 Fixnum#-@ | |
0.00 94887.26 0.00 150 0.00 0.00 IO#seek | |
0.00 94887.26 0.00 50 0.00 1305.00 Zip::CentralDirectory#start_buf | |
0.00 94887.26 0.00 100 0.00 0.00 Array#pack | |
0.00 94887.26 0.00 100 0.00 0.00 String#rindex | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::CentralDirectory#zip64_file? | |
0.00 94887.26 0.00 2292 0.00 0.00 String#bytesize | |
0.00 94887.26 0.00 500 0.00 0.00 String#slice! | |
0.00 94887.26 0.00 50 0.00 0.00 BasicObject#singleton_method_added | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::CentralDirectory#get_e_o_c_d | |
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0.00 94887.26 0.00 1346 0.00 0.00 String#unpack | |
0.00 94887.26 0.00 250 0.00 0.00 Zip::Entry.read_zip_short | |
0.00 94887.26 0.00 100 0.00 0.00 Zip::Entry.read_zip_long | |
0.00 94887.26 0.00 100 0.00 0.00 String#size | |
0.00 94887.26 0.00 946 0.00 0.00 File#path | |
0.00 94887.26 0.00 996 0.00 0.00 String#start_with? | |
0.00 94887.26 0.00 1942 0.00 0.00 String#end_with? | |
0.00 94887.26 0.00 946 0.00 0.00 Fixnum#=== | |
0.00 94887.26 0.00 50 0.00 1970.20 Zip::CentralDirectory#read_from_stream | |
0.00 94887.26 0.00 100 0.00 2707.50 Zip::File#initialize | |
0.00 94887.26 0.00 100 0.00 2138.60 IO.open | |
0.00 94887.26 0.00 50 0.00 0.00 Fixnum#| | |
0.00 94887.26 0.00 100 0.00 0.00 Zip::EntrySet#sorted_entries | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::EntrySet#entries | |
0.00 94887.26 0.00 946 0.00 0.00 File.fnmatch | |
0.00 94887.26 0.00 50 0.00 1.80 Zip::File#glob | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::IOExtras::AbstractInputStream#initialize | |
0.00 94887.26 0.00 50 0.00 838.80 Zip::InputStream#get_io | |
0.00 94887.26 0.00 50 0.00 838.80 Zip::InputStream#initialize | |
0.00 94887.26 0.00 50 0.00 0.00 IO#tell | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::Entry#unpack_local_entry | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::Entry#name_size | |
0.00 94887.26 0.00 50 0.00 0.40 Zip::ExtraField#local_size | |
0.00 94887.26 0.00 50 0.00 0.40 Zip::Entry#extra_size | |
0.00 94887.26 0.00 50 0.00 0.40 Zip::Entry#calculate_local_header_size | |
0.00 94887.26 0.00 50 0.00 100.00 Zip::Entry.read_local_entry | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::NullEncryption#header_bytesize | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::NullDecrypter#reset! | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::Decompressor#initialize | |
0.00 94887.26 0.00 50 0.00 0.60 Zip::Inflater#initialize | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::IOExtras::AbstractInputStream#flush | |
0.00 94887.26 0.00 50 0.00 100.80 Zip::InputStream#open_entry | |
0.00 94887.26 0.00 50 0.00 100.80 Zip::InputStream#get_next_entry | |
0.00 94887.26 0.00 50 0.00 939.60 Zip::Entry#get_input_stream | |
0.00 94887.26 0.00 100 0.00 0.00 Zlib::ZStream#finished? | |
0.00 94887.26 0.00 100 0.00 0.00 Zip::Inflater#internal_input_finished? | |
0.00 94887.26 0.00 50 0.00 0.00 Zip::NullDecrypter#decrypt | |
0.00 94887.26 0.00 50 0.00 1885.40 Zip::Inflater#internal_produce_input | |
0.00 94887.26 0.00 50 0.00 1885.40 Zip::Inflater#sysread | |
0.00 94887.26 0.00 50 0.00 1885.40 Zip::InputStream#sysread | |
0.00 94887.26 0.00 50 0.00 0.00 String#replace | |
0.00 94887.26 0.00 50 0.00 1885.40 Zip::IOExtras::AbstractInputStream#read | |
0.00 94887.26 0.00 100 0.00 4637.60 Bio::FastQC::Data.read_zipfile | |
0.00 94887.26 0.00 946 0.00 0.00 Hash#== | |
0.00 94887.26 0.00 946 0.00 1.23 Enumerable#all? | |
0.00 94887.26 0.00 50 0.00 149.20 Zip::EntrySet#== | |
0.00 94887.26 0.00 50 0.00 176.80 Zip::File#commit | |
0.00 94887.26 0.00 50 0.00 176.80 Zip::File#close | |
0.00 94887.26 0.00 50 0.00 6448.40 Bio::FastQC::Data.read | |
0.00 94887.26 0.00 600 0.00 0.02 Bio::FastQC::Parser#basic_statistics | |
0.00 94887.26 0.00 50 0.00 0.00 Hash.[] | |
0.00 94887.26 0.00 50 0.00 102.40 Bio::FastQC::Parser#initialize | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Parser#fastqc_version | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Parser#filename | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Parser#file_type | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Parser#encoding | |
0.00 94887.26 0.00 100 0.00 0.00 Bio::FastQC::Parser#total_sequences | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Parser#filtered_sequences | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Parser#sequence_length | |
0.00 94887.26 0.00 6157 0.00 0.00 String#to_f | |
0.00 94887.26 0.00 600 0.00 0.00 Bio::FastQC::Parser#adapter_content | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Parser#max_length | |
0.00 94887.26 0.00 200 0.00 0.25 Enumerable#reduce | |
0.00 94887.26 0.00 100 0.00 0.00 Math.log10 | |
0.00 94887.26 0.00 50 0.00 0.00 Fixnum#even? | |
0.00 94887.26 0.00 50 0.00 0.00 Bio::FastQC::Converter#initialize | |
0.00 94887.26 0.00 50 0.00 0.00 JSON::Ext::Generator::State#initialize_copy | |
0.00 94887.26 0.00 50 0.00 0.00 Hash#to_hash | |
0.00 94887.26 0.00 150 0.00 0.00 Hash#key? | |
0.00 94887.26 0.00 50 0.00 0.00 JSON::Ext::Generator::State#configure | |
0.00 94887.26 0.00 100 0.00 0.00 Hash#keys | |
0.00 94887.26 0.00 50 0.00 124.00 JSON#generate | |
0.00 94887.26 0.00 50 0.00 124.00 JSON#dump | |
0.00 94887.26 0.00 50 0.00 124.00 Bio::FastQC::Converter#to_json | |
0.00 94887.26 0.00 50 0.00 0.20 Bio::FastQC::Converter#to_tsv | |
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0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad46df7758>.read | |
0.00 94887.26 0.00 340 0.00 0.00 Fixnum#to_f | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad464b36b0>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad28363698>.read | |
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0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad280ea4e8>.read | |
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0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad100a0c48>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad001d72c0>.read | |
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0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad46430788>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad2809cfb8>.read | |
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0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad004f5970>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad46e93e28>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad464c5b30>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad46386bc0>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad46ff31b0>.read | |
0.00 94887.26 0.00 7 0.00 0.00 #<String:0x007fad00441790>.read | |
-0.00 94887.26 -0.00 50 -0.00 6448.40 Zip::File.open | |
-0.00 94887.26 -0.00 151 -0.00 628670.79 Quanto::Records::Summary.create_summary | |
0.00 9776.34 0.00 1 0.00 9776340.00 #toplevel |
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