Last active
July 13, 2017 07:16
-
-
Save inutano/8825cfd18110182a927a96357b560e73 to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#Workflow/steps> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#STAR_logfiles> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#STAR_readsPerGene> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_genes_result> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_isoforms_result> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/cwl/cwl#CommandLineTool> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl> <https://w3id.org/cwl/cwl#cwlVersion> <https://w3id.org/cwl/cwl#v1.0> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/pfastq_dump.cwl#nthreads> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/pfastq_dump.cwl#out_fastq_prefix> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/pfastq_dump.cwl#sraFiles> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/pfastq_dump.cwl#fastq> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl> <https://w3id.org/cwl/cwl#stdout> "$(inputs.out_fastq_prefix + \".fastq\")" . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl#fastq> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl#nthreads> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| added: <file:///data/rnaseq-readcount/pfastq_dump.cwl#out_fastq_prefix> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#STAR_logfiles> <https://w3id.org/cwl/cwl#outputSource> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/star_logs> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#STAR_readsPerGene> <https://w3id.org/cwl/cwl#outputSource> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/readsPerGene> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#STAR_readsPerGene> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/nthreads> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/out_fastq_prefix> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/sraFiles> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/fastq> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump> <https://w3id.org/cwl/cwl#run> <file:///data/rnaseq-readcount/pfastq_dump.cwl> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/nthreads> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#runThreadN> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/out_fastq_prefix> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#experiment_id> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/sraFiles> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#download_sra/sraFiles> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/fastq> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/genes_result> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/isoforms_result> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/readsPerGene> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/star_logs> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#run> <file:///data/rnaseq-readcount/rsem_load.cwl> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/fastq> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#pfastq_dump/fastq> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_genes_result> <https://w3id.org/cwl/cwl#outputSource> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/genes_result> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_genes_result> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_isoforms_result> <https://w3id.org/cwl/cwl#outputSource> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/isoforms_result> . | |
| added: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_isoforms_result> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/cwl/cwl#CommandLineTool> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#cwlVersion> <https://w3id.org/cwl/cwl#v1.0> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_load.cwl#fastq> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_load.cwl#rsem_index_dir> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_load.cwl#rsem_index_prefix> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_load.cwl#rsem_output_prefix> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_load.cwl#threads> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rsem_load.cwl#genes_result> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rsem_load.cwl#isoforms_result> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rsem_load.cwl#readsPerGene> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rsem_load.cwl#star_logs> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rsem_load.cwl#stat> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#fastq> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#genes_result> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#isoforms_result> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#readsPerGene> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#rsem_index_dir> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#Directory> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#rsem_index_prefix> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#rsem_output_prefix> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#stat> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#Directory> . | |
| added: <file:///data/rnaseq-readcount/rsem_load.cwl#threads> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#Workflow/steps> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#Workflow/steps> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#Workflow/steps> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignIntronMax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignIntronMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignMatesGapMax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignSJDBoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignSJoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#genomeDir> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#gtf> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#limitBAMsortRAM> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMismatchNmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMismatchNoverReadLmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMultimapNmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterType> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMattributes> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMstrandField> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMtype> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMunmapped> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSJfilterReads> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#quantMode> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#quantTranscriptomeBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#sjdbScore> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_result> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread_result> . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/cwl/cwl#CommandLineTool> . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl> <https://w3id.org/cwl/cwl#cwlVersion> <https://w3id.org/cwl/cwl#v1.0> . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/fastq_dump.cwl#out_fastq_prefix> . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/fastq_dump.cwl#sraFiles> . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/fastq_dump.cwl#fastq> . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl> <https://w3id.org/cwl/cwl#stdout> "$(inputs.out_fastq_prefix + \".fastq\")" . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl#fastq> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/fastq_dump.cwl#out_fastq_prefix> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump/out_fastq_prefix> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump/sraFiles> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump/fastq> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump> <https://w3id.org/cwl/cwl#run> <file:///data/rnaseq-readcount/fastq_dump.cwl> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump/out_fastq_prefix> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#experiment_id> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump/sraFiles> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#download_sra/sraFiles> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/bam> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/rsem_result> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem> <https://w3id.org/cwl/cwl#run> <file:///data/rnaseq-readcount/rsem_calc.cwl> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/bam> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/toTranscriptome_bam> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem_result> <https://w3id.org/cwl/cwl#outputSource> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsem/rsem_result> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread/bam> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread/gtf> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread/readCount> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread> <https://w3id.org/cwl/cwl#run> <file:///data/rnaseq-readcount/rsubread.cwl> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread/bam> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/sortedByCoord_bam> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread/gtf> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#gtf> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread_result> <https://w3id.org/cwl/cwl#outputSource> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread/readCount> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#rsubread_result> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignIntronMax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignIntronMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignMatesGapMax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignSJDBoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignSJoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/experiment_id> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/genomeDir> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/limitBAMsortRAM> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFileNamePrefix> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterMismatchNmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterMismatchNoverReadLmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterMultimapNmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterType> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMattributes> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMstrandField> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMtype> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMunmapped> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSJfilterReads> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/quantMode> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/quantTranscriptomeBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/readFilesIn> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/runThreadN> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#in> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/sjdbScore> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/sortedByCoord_bam> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#out> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/toTranscriptome_bam> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star> <https://w3id.org/cwl/cwl#run> <file:///data/rnaseq-readcount/star_mapping.cwl> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignIntronMax> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignIntronMax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignIntronMin> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignIntronMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignMatesGapMax> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignMatesGapMax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignSJDBoverhangMin> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignSJDBoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/alignSJoverhangMin> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignSJoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/experiment_id> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#experiment_id> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/genomeDir> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#genomeDir> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/limitBAMsortRAM> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#limitBAMsortRAM> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outBAMcompression> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFileNamePrefix> <https://w3id.org/cwl/cwl#valueFrom> "$(inputs.experiment_id + \".\")" . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterMismatchNmax> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMismatchNmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterMismatchNoverReadLmax> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMismatchNoverReadLmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterMultimapNmax> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMultimapNmax> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outFilterType> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterType> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMattributes> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMattributes> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMstrandField> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMstrandField> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMtype> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMtype> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSAMunmapped> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMunmapped> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/outSJfilterReads> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSJfilterReads> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/quantMode> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#quantMode> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/quantTranscriptomeBAMcompression> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#quantTranscriptomeBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/readFilesIn> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#fastq_dump/fastq> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/runThreadN> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#runThreadN> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#star/sjdbScore> <https://w3id.org/cwl/cwl#source> <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#sjdbScore> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/cwl/cwl#CommandLineTool> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <https://w3id.org/cwl/cwl#cwlVersion> <https://w3id.org/cwl/cwl#v1.0> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_calc.cwl#bam> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_calc.cwl#rsem_index_dir> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_calc.cwl#rsem_index_prefix> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_calc.cwl#rsem_output_prefix> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsem_calc.cwl#threads> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rsem_calc.cwl#rsem_result> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl#bam> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl#rsem_index_dir> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#Directory> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl#rsem_index_prefix> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl#rsem_output_prefix> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/rsem_calc.cwl#threads> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/cwl/cwl#CommandLineTool> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl> <https://w3id.org/cwl/cwl#cwlVersion> <https://w3id.org/cwl/cwl#v1.0> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsubread.cwl#bam> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/rsubread.cwl#gtf> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/rsubread.cwl#readCount> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl#bam> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl#gtf> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/rsubread.cwl#readCount> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/cwl/cwl#CommandLineTool> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#cwlVersion> <https://w3id.org/cwl/cwl#v1.0> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#alignIntronMax> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#alignIntronMin> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#alignMatesGapMax> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#alignSJDBoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#alignSJoverhangMin> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#genomeDir> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#limitBAMsortRAM> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outFileNamePrefix> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterMismatchNmax> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterMismatchNoverReadLmax> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterMultimapNmax> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterType> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outSAMattributes> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outSAMstrandField> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outSAMtype> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outSAMunmapped> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#outSJfilterReads> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#quantMode> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#quantTranscriptomeBAMcompression> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#readFilesIn> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#runThreadN> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#inputs> <file:///data/rnaseq-readcount/star_mapping.cwl#sjdbScore> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/star_mapping.cwl#logfiles> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/star_mapping.cwl#readsPerGene> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/star_mapping.cwl#sortedByCoord_bam> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/star_mapping.cwl#spliceJunctions> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl> <https://w3id.org/cwl/cwl#outputs> <file:///data/rnaseq-readcount/star_mapping.cwl#toTranscriptome_bam> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#alignIntronMax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#alignIntronMin> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#alignMatesGapMax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#alignSJDBoverhangMin> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#alignSJoverhangMin> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#genomeDir> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#Directory> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#limitBAMsortRAM> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#long> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outBAMcompression> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outFileNamePrefix> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outFileNamePrefix> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/salad#null> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterMismatchNmax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterMismatchNoverReadLmax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#float> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterMultimapNmax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outFilterType> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outSAMstrandField> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outSAMunmapped> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#outSJfilterReads> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#quantTranscriptomeBAMcompression> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#readFilesIn> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#readsPerGene> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#runThreadN> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#sjdbScore> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#sortedByCoord_bam> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#spliceJunctions> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/star_mapping.cwl#toTranscriptome_bam> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignIntronMax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignIntronMin> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignMatesGapMax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignSJDBoverhangMin> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#alignSJoverhangMin> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#genomeDir> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#Directory> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#gtf> <https://w3id.org/cwl/salad#type> <https://w3id.org/cwl/cwl#File> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#limitBAMsortRAM> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#long> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outBAMcompression> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMismatchNmax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMismatchNoverReadLmax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#float> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterMultimapNmax> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outFilterType> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMstrandField> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSAMunmapped> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#outSJfilterReads> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#string> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#quantTranscriptomeBAMcompression> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . | |
| deleted: <file:///data/rnaseq-readcount/rnaseq-readcount.cwl#sjdbScore> <https://w3id.org/cwl/salad#type> <http://www.w3.org/2001/XMLSchema#int> . |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment