fastqSE2bam.zenodo.yml

reference:  # type "File"
    class: File
    format: http://edamontology.org/format_1929
    location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa
    secondaryFiles:
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.dict
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.amb
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.ann
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.autosomal.interval_list
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.bwt
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.chrX.interval_list
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.chrY.interval_list
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.fai
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.pac
      - class: File
        location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.sa
outprefix: test  # type "string"
nthreads: 0  # type "int"
fq:  # type "File"
    class: File
    format: http://edamontology.org/format_1930
    location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/fastq/NA18940.prob0.001.rep0_1.fastq.gz
RG_ID: ERR034597 # type "string"
RG_PL: ILLUMINA # type "string"
RG_PU: ERR034597 # type "string"
RG_LB: ERR034597 # type "string"
RG_SM: NA18942 # type "string"