codonToAA.js

        1 mkclvtggnv kvlgkavhsl srigdelyle pledglslrt vnssrsayac flfaplffqq
       61 yqaatpgqdl lrckilmksf lsvfrslaml ektvekccis lngrssrlvv qlhckfgvrk
      121 thnlsfqdce slqavfdpas cphmlrapar vlgeavlpfs palaevtlgi grgrrvilrs
      181 yheeeadsta kamvtemclg eedfqqlqaq egvaitfclk efrgllsfae sanlnlsihf
      241 dapgrpaift ikdslldghf vlatlsdtds hsqdlgsper hqpvpqlqah stphpddfan
      301 ddidsymiam ettignegsr vlpsislspg pqppkspgph seeedeaeps tvpgtpppkk
      361 frslffgsil apvrspqgps pvlaedsege g

mkclvtggnvkvlgkavhslsrigdelylepledglslrtvnssrsayacflfaplffqqyqaatpgqdllrckilmksflsvfrslamlektvekccislngrssrlvvqlhckfgvrkthnlsfqdceslqavfdpascphmlraparvlgeavlpfspalaevtlgigrgrrvilrsyheeeadstakamvtemclgeedfqqlqaqegvaitfclkefrgllsfaesanlnlsihfdapgrpaiftikdslldghfvlatlsdtdshsqdlgsperhqpvpqlqahstphpddfanddidsymiamettignegsrvlpsislspgpqppkspgphseeedeaepstvpgtpppkkfrslffgsilapvrspqgpspvlaedsegeg

gggccggcaggggcggtgcgcgggaagggaccccggacccggaggtcgcggagagctgggcagtgttggccgctggcggagcgctggggcagcatgaagtgcctggtcacgggcggcaacgtgaaggtgctcggcaaggccgtccactccctgtcccgcatcggggacgagctctacctggaacccttggaggacgggctctccctccggacggtgaactcctcccgctctgcctatgcctgctttctctttgccccgctcttcttccagcaataccaggcagccacccctggtcaggacctgctgcgctgtaagatcctgatgaagtctttcctgtctgtcttccgctcactggcgatgctggagaagacggtggaaaaatgctgcatctccctgaatggccggagcagccgcctggtggtccagctgcattgcaagttcggggtgcggaagactcacaacctgtccttccaggactgtgagtccctgcaggccgtcttcgacccagcctcgtgcccccacatgctccgcgccccagcacgggttctgggggaggctgttctgcccttctctcctgcactggctgaagtgacgctgggcattggccgtggccgcagggtcatcctgcgcagctaccacgaggaggaggcagacagcactgccaaagccatggtgactgagatgtgccttggagaggaggatttccagcagctgcaggcccaggaaggggtggccatcactttctgcctcaaggaattccgggggctcctgagctttgcagagtcagcaaacttgaatcttagcattcattttgatgctccaggcaggcccgccatcttcaccatcaaggactctttgctggacggccactttgtcttggccacactctcagacaccgactcgcactcccaggacctgggctccccagagcgtcaccagccagtgcctcagctccaggctcacagcacaccccacccggacgactttgccaatgacgacattgactcttacatgatcgccatggaaaccactataggcaatgagggctcgcgggtgctgccctccatttccctttcacctggcccccagccccccaagagccccggtccccactccgaggaggaagatgaggctgagcccagtacagtgcctgggactcccccacccaagaagttccgctcactgttcttcggctccatcctggcccctgtacgctccccccagggccccagccctgtgctggcggaagacagtgagggtgaaggctgaaccaagaacctgaagcctgtacccagaggccttggactagacgaagccccagccagtggcagaactgggtctctcagccctggggatcagaaaggtgggcttgctggagctgagctgtttcactgcctctcgcaggccccagctggctgtcactgtaaagctgtcccacagcggtcgggcctgggccgttatctccccacaacccccagccaatcaggactttccagacttggccctgaactactgacgttcctacctcttatttctcattgagcctcaggctatactccagctggccaaggctggaaacctgtctccctcaggctcaccttcctaaggaaaatgtcatagtaggtgctgctggcccctggtgatccagcttctctgccaatcatgacctgttccttcctgaagtcctgggcatgcatctgggacccccgtggagctgacaagttttccttgctttcctgatactctttggcgctgacttggaattctaagagccttggacccgagtgtgtggctagggttgccctggctggggcccggtgccgagactcccaagcggctctgtgcagaagagctgccaggcagtgtcttagatgtgagacggaggccatggcgagaatccagctttgacctttattcaagagaccagatgggttgccccaggatccggctgccagccctgaggccaagcacggctggagacccacgacctggcctgccgttgccctgagctgcagcctcggccccaggatcctgctcacagtcaccgcaggtgcaggcaggaagcagccctgggggactggacgctgctattgattcattaaaaaaagaaaagaaaaatacaaaaaaa

       Name: 'Standard'
       {
         A: ['GCT',  'GCC',  'GCA',  'GCG'],
         R: ['CGT',  'CGC',  'CGA',  'CGG',  'AGA',  'AGG'],
         N: ['AAT',  'AAC'],
         D: ['GAT',  'GAC'],
         C: ['TGT',  'TGC'],
         Q: ['CAA',  'CAG'],
         E: ['GAA',  'GAG'],
         G: ['GGT',  'GGC',  'GGA',  'GGG'],
         H: ['CAT',  'CAC'],
         I: ['ATT',  'ATC',  'ATA'],
         L: ['TTA',  'TTG',  'CTT',  'CTC',  'CTA',  'CTG'],
         K: ['AAA',  'AAG'],
         M: ['ATG'],
         F: ['TTT',  'TTC'],
         P: ['CCT',  'CCC',  'CCA',  'CCG'],
         S: ['TCT',  'TCC',  'TCA',  'TCG',  'AGT',  'AGC'],
         T: ['ACT',  'ACC',  'ACA',  'ACG'],
         W: ['TGG'],
         Y: ['TAT',  'TAC'],
         V: ['GTT',  'GTC',  'GTA',  'GTG'],
     Stops: ['TAA',  'TAG',  'TGA'],
    Starts: ['TTG',  'CTG',  'ATG'],
    }

for (key in a) {
 	if (a.hasOwnProperty(key)) {
 		for (var i = 0; i < a[key].length; i++){
 			b[a[key][i]] = key;
 		}
 	}
}

{ GCT: 'A',
  GCC: 'A',
  GCA: 'A',
  GCG: 'A',
  CGT: 'R',
  CGC: 'R',
  CGA: 'R',
  CGG: 'R',
  AGA: 'R',
  AGG: 'R',
  AAT: 'N',
  AAC: 'N',
  GAT: 'D',
  GAC: 'D',
  TGT: 'C',
  TGC: 'C',
  CAA: 'Q',
  CAG: 'Q',
  GAA: 'E',
  GAG: 'E',
  GGT: 'G',
  GGC: 'G',
  GGA: 'G',
  GGG: 'G',
  CAT: 'H',
  CAC: 'H',
  ATT: 'I',
  ATC: 'I',
  ATA: 'I',
  TTA: 'L',
  TTG: 'Starts',
  CTT: 'L',
  CTC: 'L',
  CTA: 'L',
  CTG: 'Starts',
  AAA: 'K',
  AAG: 'K',
  ATG: 'Starts',
  TTT: 'F',
  TTC: 'F',
  CCT: 'P',
  CCC: 'P',
  CCA: 'P',
  CCG: 'P',
  TCT: 'S',
  TCC: 'S',
  TCA: 'S',
  TCG: 'S',
  AGT: 'S',
  AGC: 'S',
  ACT: 'T',
  ACC: 'T',
  ACA: 'T',
  ACG: 'T',
  TGG: 'W',
  TAT: 'Y',
  TAC: 'Y',
  GTT: 'V',
  GTC: 'V',
  GTA: 'V',
  GTG: 'V',
  TAA: 'Stops',
  TAG: 'Stops',
  TGA: 'Stops' }

for (var i = 0; i < (c.length - 2); i+=3) {
	var codon = c[i]+c[i+1]+c[i+2];
	console.log(codon.toUpperCase());
	d += b[codon.toUpperCase()];	
}