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ito4303 / post-model-selection_1.R
Created April 8, 2022 06:36
# cf. Kuchibhotla et al. (2022)
# 10.1146/annurev-statistics-100421-044639
library(MASS)
library(AICcmodavg)
library(parallel)
# Set number of CPU cores
options(cl.cores = 8)
@ito4303
ito4303 / linear_and_path.R
Last active March 18, 2022 23:26
Comparison AIC in linear regressions and path analysis
# https://github.com/OhkuboYusaku/blog/tree/main/causal
library(lavaan)
library(parallel)
N.sim <- 10000
N.sample <- 100
sig.y <- 10
@ito4303
ito4303 / CAR_nimble.Rmd
Last active June 23, 2024 02:47
Intrinsic Gaussian CAR model using NIMBLE
---
title: "R Notebook"
output: html_notebook
---
# Intrinsic Gaussian CAR model using NIMBLE
```{r setup}
library(readr)
library(nimble)
@ito4303
ito4303 / cjs_nimble.Rmd
Last active March 7, 2022 10:03
CJS model using nimble
---
title: "R Notebook"
output: html_notebook
---
# Cormack-Jolly-Seber (CJS) model
```{r setup}
library(AHMbook)
library(nimble)
@ito4303
ito4303 / nmix_nimble_parallel.Rmd
Created February 23, 2022 21:00
N-mixure model using nimble with parallel computing
---
title: "R Notebook"
output: html_notebook
---
# N-mixture model
```{r setup}
library(AHMbook)
library(nimble)
@ito4303
ito4303 / cjs_nimbleEcology.Rmd
Created February 23, 2022 00:55
Cormack-Jolly-Seber (CJS) model using nimbleEcology
---
title: "R Notebook"
output: html_notebook
---
# Cormack-Jolly-Seber (CJS) model
```{r setup}
library(AHMbook)
library(nimbleEcology)
@ito4303
ito4303 / nmix_nimbleEcology.Rmd
Last active February 21, 2022 12:18
N-mixture model using nimbleEcology
---
title: "R Notebook"
output: html_notebook
---
# N-mixture model
```{r setup}
library(AHMbook)
library(nimbleEcology)
@ito4303
ito4303 / dynocc_nimbleEcology.Rmd
Last active February 21, 2022 10:15
Dynamic occupancy model using nimbleEcology
---
title: "R Notebook"
output: html_notebook
---
# Dynamic occupancy model
```{r setup}
library(AHMbook)
library(nimbleEcology)
@ito4303
ito4303 / occ_nimbleEcology.Rmd
Last active February 21, 2022 10:14
Site occupancy model using nimbleEcology
---
title: "R Notebook"
output: html_notebook
---
# Site occupancy model analyzed using nimbleEcology
```{r setup}
library(AHMbook)
library(nimbleEcology)
@ito4303
ito4303 / site_occ_unmarked_nimble.Rmd
Last active February 21, 2022 08:11
Site occupancy model using unmarked and nimble
---
title: "R Notebook"
output: html_notebook
---
```{r setup}
library(AHMbook)
library(unmarked)
library(nimble)
library(coda)