Last active
August 29, 2015 14:05
-
-
Save j08lue/5327b2217b4644834cc6 to your computer and use it in GitHub Desktop.
CESM post-run short-term archiving
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/bin/bash | |
| CASE=$1 | |
| DATA_ROOT=${DATA_ROOT:-$(pwd)} | |
| RUNDIR="$DATA_ROOT/$CASE/run" | |
| DOUT_S="TRUE" | |
| DOUT_S_ROOT=${DOUT_S_ROOT:-"$DATA_ROOT/$CASE"} | |
| cd $RUNDIR | |
| if [[ $? -ne 0 ]] ; then | |
| echo "$RUNDIR was not found! Exiting." | |
| exit 1 | |
| fi | |
| #short-term archive script - move model output out of run directory | |
| #to free disc space for next invocation of model run | |
| #must be executed from run directory | |
| #function dispose: | |
| #moves output files to specified area of st archive and will | |
| #process interim files along the way: | |
| #arg1 => interim files flag | |
| #arg2 => destination | |
| #remaining args => actual files to be processed | |
| dispose() { | |
| if [[ "$1" == "ifiles_y" ]] && [[ "$DOUT_S_SAVE_INT_REST_FILES" != "TRUE" ]]; then | |
| shift | |
| shift | |
| rm $* 2> /dev/null | |
| else | |
| shift | |
| dest=$1 | |
| mkdir -p $dest | |
| shift | |
| mv $* $dest 2> /dev/null | |
| fi | |
| } | |
| #function get_inst_suffix: | |
| #Gets a string corresponding to the current instance index of a given | |
| #component, with a leading '.'; this can be appended to a file name. | |
| #In the general case, the returned string is something like ".###", | |
| #but if there is only a single instance of the given component, then | |
| #the returned string is empty, because in that case the file names | |
| #don't have any instance number (or the associated extra '_'). | |
| # | |
| #arg1 => instance index for a given component | |
| #arg2 => number of instances of this component | |
| # | |
| #result is returned in $inst_suffix | |
| get_inst_suffix() { | |
| # echo "get_inst_suffixa $1 $2 ${inst_suffix}" | |
| if [[ $2 -eq 1 ]]; then # only one instance of this component | |
| inst_suffix="" | |
| else # multiple instances of this component | |
| inst_suffix=`printf _%04d $1` | |
| fi | |
| # echo "get_inst_suffixb $1 $2 ${inst_suffix}" | |
| } | |
| echo "" | |
| echo "st_archive.sh: start of short-term archiving" | |
| #validate required env var settings | |
| if [[ -z "$DOUT_S_ROOT" ]]; then | |
| echo "st_archive.sh: error, environment variable DOUT_S_ROOT is required " | |
| echo " for root location of short-term archive" | |
| echo "st_archive.sh: exiting" | |
| exit 1 | |
| fi | |
| sta=${DOUT_S_ROOT}/.sta-$$-`date +%Y%m%d%H%M%S%N` | |
| mkdir -p ${sta} 2> /dev/null | |
| if [[ $? -ne 0 ]]; then | |
| echo "st_archive.sh: error, unable to create short-term archive directory" | |
| echo "st_archive.sh: exiting" | |
| exit 1 | |
| fi | |
| mv ${DOUT_S_ROOT}/* ${sta} | |
| if [[ -z "$DOUT_S_SAVE_INT_REST_FILES" ]]; then | |
| echo "st_archive.sh: warning, environment variable DOUT_S_SAVE_INT_REST_FILES is not " | |
| echo " set - using "FALSE" as default for saving interim restart files" | |
| export DOUT_S_SAVE_INT_REST_FILES=FALSE | |
| fi | |
| if [[ "$DOUT_S_SAVE_INT_REST_FILES" == "FALSE" ]]; then | |
| echo "st_archive.sh: restart files from end of run will be saved, " | |
| echo " interim restart files will be deleted" | |
| fi | |
| ## Check component instance counts | |
| if [[ -z "$NINST_ATM" ]]; then | |
| echo "st_archive.sh: warning, NINST_ATM not set -- using 1 instance" | |
| export NINST_ATM=1 | |
| fi | |
| if [[ -z "$NINST_LND" ]]; then | |
| echo "st_archive.sh: warning, NINST_LND not set -- using 1 instance" | |
| export NINST_LND=1 | |
| fi | |
| if [[ -z "$NINST_ICE" ]]; then | |
| echo "st_archive.sh: warning, NINST_ICE not set -- using 1 instance" | |
| export NINST_ICE=1 | |
| fi | |
| if [[ -z "$NINST_OCN" ]]; then | |
| echo "st_archive.sh: warning, NINST_OCN not set -- using 1 instance" | |
| export NINST_OCN=1 | |
| fi | |
| if [[ -z "$NINST_GLC" ]]; then | |
| echo "st_archive.sh: warning, NINST_GLC not set -- using 1 instance" | |
| export NINST_GLC=1 | |
| fi | |
| if [[ -z "$NINST_WAV" ]]; then | |
| echo "st_archive.sh: warning, NINST_WAV not set -- using 1 instance" | |
| export NINST_WAV=1 | |
| fi | |
| #create directory for restart files | |
| set ${CASE}.cpl.r.* | |
| cplfile=`ls -rt $* 2> /dev/null | tail -1` | |
| dname=`echo $cplfile | sed "s/\.nc//; s/^.*\.r\.//;"` | |
| if [[ -d ${sta}/rest/${dname} ]]; then | |
| rm -rf ${sta}/rest/${dname} | |
| fi | |
| mkdir -p ${sta}/rest/${dname} | |
| if [[ $? -ne 0 ]]; then | |
| echo "st_archive.sh: error, unable to create rest directory" | |
| echo "st_archive.sh: exiting" | |
| exit 1 | |
| fi | |
| #populate temp directory with pointer files | |
| set rpointer.* | |
| if [[ $# -le 0 ]]; then | |
| echo "st_archive.sh: error, script should be invoked from run directory..." | |
| echo " expecting restart pointer files of the form 'rpointer.<component>'" | |
| echo " but did not find any: $*" | |
| echo "st_archive.sh: exiting" | |
| exit 1 | |
| fi | |
| mv $* ${sta}/rest/${dname} | |
| set cpl.log.*; dispose ifiles_n ${sta}/cpl/logs $* | |
| set cesm*.log.*; dispose ifiles_n ${sta}/cpl/logs $* | |
| set ${CASE}.cpl.r.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/cpl/rest $* | |
| set ${CASE}.cpl.h* ; dispose ifiles_n ${sta}/cpl/hist $* | |
| # DART assimilation-related files | |
| set dart_log.*; dispose ifiles_n ${sta}/dart/logs $* | |
| set True_State.*.nc; dispose ifiles_n ${sta}/dart/hist $* | |
| set Prior_Diag.*.nc; dispose ifiles_n ${sta}/dart/hist $* | |
| set Posterior_Diag.*.nc; dispose ifiles_n ${sta}/dart/hist $* | |
| set obs_seq.*.out; dispose ifiles_n ${sta}/dart/hist $* | |
| set obs_seq.*.final; dispose ifiles_n ${sta}/dart/hist $* | |
| set pr*inflate_restart*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/dart/rest $* | |
| set po*inflate_restart*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/dart/rest $* | |
| IDX=1 | |
| while [[ $IDX -le $NINST_ATM ]] | |
| do | |
| get_inst_suffix $IDX $NINST_ATM | |
| set atm${inst_suffix}.log.*; dispose ifiles_n ${sta}/atm/logs $* | |
| set ${CASE}.cam*${inst_suffix}.r.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.rs.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.ra.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.rh0.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.rh1.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.rh2.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.rh3.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.rh4.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.rh5.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.cam*${inst_suffix}.h0.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.cam*${inst_suffix}.h1.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.cam*${inst_suffix}.h2.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.cam*${inst_suffix}.h3.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.cam*${inst_suffix}.h4.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.cam*${inst_suffix}.h5.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.cam*${inst_suffix}.hs.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.cam*${inst_suffix}.i.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/init $* | |
| set ${CASE}.datm${inst_suffix}.r.* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.datm${inst_suffix}.rs* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.datm${inst_suffix}.h.* ; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.r01.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.wrf.r02.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.wrf.r03.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/atm/rest $* | |
| set ${CASE}.wrf.h01.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h02.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h03.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h1aux01.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h1aux02.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h1aux03.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h2aux01.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h2aux02.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h2aux03.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h3aux01.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h3aux02.*; dispose ifiles_n ${sta}/atm/hist $* | |
| set ${CASE}.wrf.h3aux03.*; dispose ifiles_n ${sta}/atm/hist $* | |
| IDX=`expr $IDX + 1` | |
| done | |
| IDX=1 | |
| while [[ $IDX -le $NINST_LND ]] | |
| do | |
| get_inst_suffix $IDX $NINST_LND | |
| set lnd${inst_suffix}.log.*; dispose ifiles_n ${sta}/lnd/logs $* | |
| set ${CASE}.clm?${inst_suffix}.r.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.clm?${inst_suffix}.rh0.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.clm?${inst_suffix}.rh1.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.clm?${inst_suffix}.rh2.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.clm?${inst_suffix}.rh3.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.clm?${inst_suffix}.rh4.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.clm?${inst_suffix}.rh5.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.clm?${inst_suffix}.h0.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/lnd/hist $* | |
| set ${CASE}.clm?${inst_suffix}.h1.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/lnd/hist $* | |
| set ${CASE}.clm?${inst_suffix}.h2.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/lnd/hist $* | |
| set ${CASE}.clm?${inst_suffix}.h3.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/lnd/hist $* | |
| set ${CASE}.clm?${inst_suffix}.h4.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/lnd/hist $* | |
| set ${CASE}.clm?${inst_suffix}.h5.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/lnd/hist $* | |
| set ${CASE}.clm?${inst_suffix}.hv.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/lnd/hist $* | |
| set ${CASE}.clm?${inst_suffix}.i.*; dispose ifiles_y ${sta}/lnd/init $* | |
| set ${CASE}.dlnd${inst_suffix}.r.* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.dlnd${inst_suffix}.rs* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/lnd/rest $* | |
| set ${CASE}.dlnd${inst_suffix}.h.* ; dispose ifiles_n ${sta}/lnd/hist $* | |
| IDX=`expr $IDX + 1` | |
| done | |
| IDX=1 | |
| while [[ $IDX -le $NINST_ROF ]] | |
| do | |
| get_inst_suffix $IDX $NINST_ROF | |
| set rof${inst_suffix}.log.*; dispose ifiles_n ${sta}/rof/logs $* | |
| set ${CASE}.rtm${inst_suffix}.r.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/rof/rest $* | |
| set ${CASE}.rtm${inst_suffix}.rh0.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/rof/rest $* | |
| set ${CASE}.rtm${inst_suffix}.rh1.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/rof/rest $* | |
| set ${CASE}.rtm${inst_suffix}.rh2.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/rof/rest $* | |
| set ${CASE}.rtm${inst_suffix}.rh3.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/rof/rest $* | |
| set ${CASE}.rtm${inst_suffix}.h0.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/rof/hist $* | |
| set ${CASE}.rtm${inst_suffix}.h1.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/rof/hist $* | |
| set ${CASE}.rtm${inst_suffix}.h2.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/rof/hist $* | |
| set ${CASE}.rtm${inst_suffix}.h3.*; latest=`ls -rt $* 2> /dev/null | tail -1`; cp $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_n ${sta}/rof/hist $* | |
| IDX=`expr $IDX + 1` | |
| done | |
| IDX=1 | |
| while [[ $IDX -le $NINST_ICE ]] | |
| do | |
| get_inst_suffix $IDX $NINST_ICE | |
| set ice${inst_suffix}.log.*; dispose ifiles_n ${sta}/ice/logs $* | |
| set ${CASE}.cice${inst_suffix}.r.[0-9]*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ice/rest $* | |
| set ${CASE}.cice${inst_suffix}.r.volpn*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ice/rest $* | |
| set ${CASE}.cice${inst_suffix}.r.dEdd*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ice/rest $* | |
| set ${CASE}.cice${inst_suffix}.r.age*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ice/rest $* | |
| set ${CASE}.cice${inst_suffix}.r.aero*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ice/rest $* | |
| set ${CASE}.cice${inst_suffix}.h*; dispose ifiles_n ${sta}/ice/hist $* | |
| set ${CASE}.cice${inst_suffix}.i.*; dispose ifiles_y ${sta}/ice/init $* | |
| set ${CASE}.dice${inst_suffix}.r.* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ice/rest $* | |
| set ${CASE}.dice${inst_suffix}.rs* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ice/rest $* | |
| set ${CASE}.dice${inst_suffix}.h.* ; dispose ifiles_n ${sta}/ice/hist $* | |
| IDX=`expr $IDX + 1` | |
| done | |
| IDX=1 | |
| while [[ $IDX -le $NINST_OCN ]] | |
| do | |
| get_inst_suffix $IDX $NINST_OCN | |
| set ocn${inst_suffix}.log.*; dispose ifiles_n ${sta}/ocn/logs $* | |
| set ${CASE}.pop${inst_suffix}.r.*.hdr; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.r.*0000; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.r.*0000.nc; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.rh.ecosys.*.hdr; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.rh.ecosys.*0000; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.rh.ecosys.*0000.nc; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.rh.*.hdr; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.rh.*0000; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.rh.*0000.nc; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.ro.*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.pop${inst_suffix}.d?*; dispose ifiles_n ${sta}/ocn/hist $* | |
| set ${CASE}.pop${inst_suffix}.h*; dispose ifiles_n ${sta}/ocn/hist $* | |
| set ${CASE}.docn${inst_suffix}.r.* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.docn${inst_suffix}.rs* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/ocn/rest $* | |
| set ${CASE}.docn${inst_suffix}.h.* ; dispose ifiles_n ${sta}/ocn/hist $* | |
| IDX=`expr $IDX + 1` | |
| done | |
| IDX=1 | |
| while [[ $IDX -le $NINST_GLC ]] | |
| do | |
| get_inst_suffix $IDX $NINST_GLC | |
| set glc${inst_suffix}.log.*; dispose ifiles_n ${sta}/glc/logs $* | |
| set ${CASE}.cism${inst_suffix}.r.[0-9]*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/glc/rest $* | |
| set ${CASE}.cism${inst_suffix}.r.volpn*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/glc/rest $* | |
| set ${CASE}.cism${inst_suffix}.r.dEdd*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/glc/rest $* | |
| set ${CASE}.cism${inst_suffix}.r.age*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/glc/rest $* | |
| set ${CASE}.cism${inst_suffix}.r.aero*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/glc/rest $* | |
| set ${CASE}.cism${inst_suffix}.h*; dispose ifiles_n ${sta}/glc/hist $* | |
| set ${CASE}.cism${inst_suffix}.i.*; dispose ifiles_y ${sta}/glc/init $* | |
| IDX=`expr $IDX + 1` | |
| done | |
| IDX=1 | |
| while [[ $IDX -le $NINST_WAV ]] | |
| do | |
| get_inst_suffix $IDX $NINST_WAV | |
| set wav${inst_suffix}.log.*; dispose ifiles_n ${sta}/wav/logs $* | |
| set ${CASE}.ww3${inst_suffix}.r.[0-9]*; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/wav/rest $* | |
| set ${CASE}.ww3${inst_suffix}.h*; dispose ifiles_n ${sta}/wav/hist $* | |
| set ${CASE}.ww3${inst_suffix}.i.*; dispose ifiles_y ${sta}/wav/init $* | |
| set ${CASE}.dwav${inst_suffix}.r.* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/wav/rest $* | |
| set ${CASE}.dwav${inst_suffix}.rs* ; latest=`ls -rt $* 2> /dev/null | tail -1`; mv $latest ${sta}/rest/${dname} 2> /dev/null; dispose ifiles_y ${sta}/wav/rest $* | |
| set ${CASE}.dwav${inst_suffix}.h.* ; dispose ifiles_n ${sta}/wav/hist $* | |
| IDX=`expr $IDX + 1` | |
| done | |
| #copy back the required files for next restart | |
| cp ${sta}/rest/${dname}/* . | |
| if mv ${sta}/* ${DOUT_S_ROOT}; then | |
| rm -fr ${sta} | |
| else | |
| echo "st_archive.sh: error, final move command unsuccessful" | |
| echo " some short-term archive data may be in ${sta}" | |
| echo "st_archive.sh: exiting" | |
| exit 1 | |
| fi | |
| echo "st_archive.sh: short-term archiving completed successfully" | |
| exit 0 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment