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# Place this  file inside your ~/.idlerc/ folder
# or paste its contents inside 
# /path/to/python/idlelib/config-highlight.def
# Adapted from SublimeText's Monokai

[monokai]
normal-foreground= #F8F8F2
normal-background= #272822
keyword-foreground= #F92672
keyword-background= #272822

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"""
Experimental wrapper to use Chimera's Python directly from console.

You can `import chimera` with no errors!

Usage
=====
1. Alias your /path/to/chimera/bin/python binary to something more user-friendly, like `chimerapy`.
2. Download these two files and put them together
3. Run `chimerapy -i chimera_cli.py`. (Tip: Realias `chimerapy` to this command).

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######################################################################
### Center multi-unit protein in pbc box with VMD
### Make sure you are in first frame of MD
######################################################################

# Join separate units for this first frame only
pbc join connected -now
pbc join residue -now

# Join the protein for all MD

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jaimergp

# Autocompletions for conda commands
# Place this file in ~./config/fish/completions/

# Original implementations, but slow
# function __fish_conda_commands
#   command conda help | awk '/^    \S/ {print $1}'
# end
# function __fish_conda_envs
#   command conda env list | awk 'NR > 2 {print $1}'
# end

jaimergp

#!/usr/bin/env python
# encoding: utf-8

"""
Download your entire Fotolog to disk, comments included
@jaimergp, 2016

Dependencies: requests, beautifulsoup4
"""

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#!/usr/bin/env python

import os
from shutil import copy
from pprint import pprint

path = os.path.expanduser("~/.chimera/preferences")
copy(path, path + ".bak")  # just in case
with open(path) as f:
    data = f.read()

jaimergp

#!/usr/bin/env python
# -*- coding: utf-8 -*-

from __future__ import print_function
import pychimera
import os
# os.environ['CHIMERADIR'] = '/path/to/headless/chimera'
pychimera.patch_environ()
pychimera.enable_chimera()

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