Created
September 12, 2018 08:25
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Parallel computation in R usable on windows machines with SOCKS parallelization.
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library(parallel) | |
# detect number of compute cores | |
num_cores <- detectCores() | |
# register the cluster | |
cl <- makeCluster(num_cores) | |
# load libraries on all nodes in cluster | |
clusterEvalQ(cl, library(data.table)) | |
# register pre-calculated (global) variable on all nodes in cluster | |
shared_dt <- data.table(a=1:10000, b=1:10000) | |
clusterExport(cl, "shared_dt") | |
# split the indeces to delegate work to the nodes | |
indeces <- splitIndices(nrow(shared_dt), num_cores) | |
# parallel computation | |
result_list <- parLapply(cl, indeces, function(inds){ | |
# do the work for the selected part of data table | |
res <- shared_dt[inds, c := a + b][inds,] | |
}) | |
# row bind the results | |
result <- rbindlist(result_list) | |
result | |
stopCluster(cl) |
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