Mainak Jas jasmainak

Install instructions

These instructions are for installing NEURON and NetPyNE with linux and a conda environment.

Create a neuron directory in your home directory, put the gzipped source files in it, and expand them.

cd $HOME
mkdir neuron
mv iv-mm.tar.gz neuron

Locate the section for your github remote in the .git/config file. It looks like this:

[remote "origin"]
	fetch = +refs/heads/*:refs/remotes/origin/*
	url = [email protected]:joyent/node.git

Now add the line fetch = +refs/pull/*/head:refs/remotes/origin/pr/* to this section. Obviously, change the github url to match your project's URL. It ends up looking like this:

	from __future__ import print_function

	import os.path as op
	import inspect
	import distance
	import numpy as np
	from scipy.misc import comb
	import progressbar as pb
	import progressbar.widgets as pw

	# -- coding: utf-8 --

	# Authors: Eric Larson <[email protected]>
	#
	# License: BSD (3-clause)

	from __future__ import print_function

	from copy import deepcopy
	import time

	#!/usr/bin/env python
	#
	# Solve LASSO regression problem with ISTA and FISTA
	# iterative solvers.

	# Author : Alexandre Gramfort, [email protected]
	# License BSD

	import time
	from math import sqrt

	import os

	import ipywidgets as widgets


	class FileBrowser(object):
	def __init__(self):
	self.path = os.getcwd()
	self._update_files()

	sudo apt-key adv --keyserver hkp://p80.pool.sks-keyservers.net:80 --recv-keys 58118E89F3A912897C070ADBF76221572C52609D

	sh -c 'echo deb https://apt.dockerproject.org/repo ubuntu-trusty main > /etc/apt/sources.list.d/docker.list'

	# Install docker
	sudo apt-get update
	sudo apt-get purge lxc-docker
	sudo apt-get install linux-image-extra-$(uname -r)
	sudo apt-get install docker-engine
	sudo service docker start

	[Desktop Entry]
	Type=Application
	Terminal=false
	StartupNotify=true
	Name=Sublime Text 3
	Name[en_US]=Sublime Text 3
	GenericName=Text Editor
	GenericName[en_US]=Text Editor
	Comment=Edit text files
	Comment[en_US]=Edit text files

	# Author : Alex Gramfort
	# license BSD (copied for Chaco example data_stream.py)

	# to use it:
	# Start ./sine2ft in the background (available in fieldtrip repo)
	# Start the buffer
	# Then run this script in a python terminal

	# Major library imports
	import sys

	returns:
	27.0745537031
	365.073216463
	27.1356784749