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Logs of running SDK tests
Raw
kb-sdk-test-logs.txt
git submodule init
git submodule update
cp submodules_hacks/AuthConstants.pm submodules/auth/Bio-KBase-Auth/lib/Bio/KBase/
Running unit tests
nose2 -s test_scripts/py_module_tests -t src/java/us/kbase/templates
Loading test config from /vagrant/kb_sdk/test_scripts/test.cfg
Authorization url: https://ci.kbase.us/services/auth/api/legacy/KBase/Sessions/Login
ant test -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
Buildfile: /vagrant/kb_sdk/build.xml
init:
[mkdir] Created dir: /vagrant/kb_sdk/classes
compile:
[echo] Compiling with jar directory: ../jars/lib/jars/
[javac] Compiling 239 source files to /vagrant/kb_sdk/classes
[javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
[javac] 1 warning
[copy] Copying 206 files to /vagrant/kb_sdk/classes
[jar] Building jar: /vagrant/kb_sdk/dist/kbase_module_builder2.jar
[copy] Copying 44 files to /vagrant/kb_sdk/classes
[jar] Building jar: /vagrant/kb_sdk/dist/kbase-kidl-parser.jar
[delete] Deleting directory /vagrant/kb_sdk/classes
test:
[delete] Deleting directory /vagrant/kb_sdk/reports
[mkdir] Created dir: /vagrant/kb_sdk/reports
[mkdir] Created dir: /vagrant/kb_sdk/reports/html
[unzip] Expanding: /vagrant/kb_sdk/dist/kbase_module_builder2.jar into /vagrant/kb_sdk/reports/classes
[jacoco:coverage] Enhancing junit with coverage
[junit] Running us.kbase.kidl.test.KidlTest
[junit] Testsuite: us.kbase.kidl.test.KidlTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.932 sec
[junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.932 sec
[junit]
[junit] Testcase: testJsonSchemas took 0.958 sec
[junit] Testcase: testJsonSchemas2 took 0.87 sec
[junit] Testcase: testOptionalAnnotation took 0.007 sec
[junit] Testcase: testDeprecation took 0.032 sec
[junit] Testcase: testReferenceId took 0.001 sec
[junit] Testcase: testSyntaxError took 0.035 sec
[junit] Testcase: testTupleFieldDuplication took 0.005 sec
[junit] Testcase: testTupleFieldWithoutName took 0.006 sec
[junit] Running us.kbase.mobu.compiler.test.CompileReporterTest
[junit] Testsuite: us.kbase.mobu.compiler.test.CompileReporterTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.177 sec
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.177 sec
[junit]
[junit] Testcase: testLines took 0.166 sec
[junit] Running us.kbase.mobu.compiler.test.html.HTMLGenTest
[junit] Testsuite: us.kbase.mobu.compiler.test.html.HTMLGenTest
[junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.31 sec
[junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.31 sec
[junit]
[junit] Testcase: testImports took 0.221 sec
[junit] Testcase: testBadSpec took 0.001 sec
[junit] Testcase: testScriptTag took 0.003 sec
[junit] Testcase: testAuth took 0.016 sec
[junit] Testcase: testLinks took 0.009 sec
[junit] Testcase: testEmptySpec took 0.001 sec
[junit] Testcase: testMultiModuleSpec took 0.001 sec
[junit] Testcase: testHTMLVisitorConstructor took 0 sec
[junit] Testcase: testTypesAndFuncs took 0.015 sec
[junit] Testcase: testWhitespace took 0.009 sec
[junit] Running us.kbase.mobu.initializer.test.AsyncDockerTest
[junit] Testsuite: us.kbase.mobu.initializer.test.AsyncDockerTest
[junit] Tests run: 3, Failures: 3, Errors: 0, Skipped: 0, Time elapsed: 89.415 sec
[junit] Tests run: 3, Failures: 3, Errors: 0, Skipped: 0, Time elapsed: 89.415 sec
[junit] ------------- Standard Output ---------------
[junit] Test [testPerlAsyncService]
[junit] Done! Your module is available in the TestAsyncPerl directory.
[junit] make[1]: Entering directory '/vagrant/kb_sdk'
[junit] git submodule update --init submodules/jars
[junit] ant -Djardir=submodules/jars/lib/jars/ -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /vagrant/kb_sdk/build.xml
[junit]
[junit] init:
[junit] [mkdir] Created dir: /vagrant/kb_sdk/classes
[junit]
[junit] compile:
[junit] [echo] Compiling with jar directory: submodules/jars/lib/jars/
[junit] [javac] Warning: us/kbase/mobu/git.properties modified in the future.
[junit] [javac] Compiling 239 source files to /vagrant/kb_sdk/classes
[junit] [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
[junit] [javac] 1 warning
[junit] [copy] Copying 206 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase_module_builder2.jar
[junit] [copy] Copying 44 files to /vagrant/kb_sdk/classes
[junit] [jar] Warning: us/kbase/jkidl/FileIncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/IncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/MemoizingIncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/ParseException.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/ParseNode.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SimpleCharStream.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SpecParser.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SpecParserConstants.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SpecParserTokenManager.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/StaticIncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/Token.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/TokenMgrError.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/Utils.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/JSONableVisitor.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationId.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationMetadata.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationRange.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationSearch.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotations.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAuthdef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbBasicType.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbFuncdef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbList.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbMapping.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbModule.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbModuleComp.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbModuleDef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbParameter.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbScalar.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbService.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbStruct.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbStructItem.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbTuple.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbType.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbTypeInfo.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbTypedef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbUnspecifiedObject.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlNode.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlParseException.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlParser.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlVisitor.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/SpecXmlHelper.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/Utils.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/test/KidlTest.java modified in the future.
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase-kidl-parser.jar
[junit] [delete] Deleting directory /vagrant/kb_sdk/classes
[junit]
[junit] copy_kidl_jar:
[junit]
[junit] sh_bin:
[junit] [echo] Successfully built: /vagrant/kb_sdk/bin/kb-sdk
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/start_service.sh
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/stop_service.sh
[junit]
[junit] compile_and_bin:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 11 seconds
[junit] make[1]: Leaving directory '/vagrant/kb_sdk'
[junit] /vagrant/kb_sdk/bin/kb-sdk
[junit] make[1]: Entering directory '/vagrant/kb_sdk/TestAsyncPerl'
[junit] kb-sdk compile TestAsyncPerl.spec \
[junit] --out lib \
[junit] --plclname TestAsyncPerl::TestAsyncPerlClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestAsyncPerl.TestAsyncPerlClient \
[junit] --javasrc src \
[junit] --java \
[junit] --plsrvname TestAsyncPerl::TestAsyncPerlServer \
[junit] --plimplname TestAsyncPerl::TestAsyncPerlImpl \
[junit] --plpsginame TestAsyncPerl.psgi;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] make[1]: Leaving directory '/vagrant/kb_sdk/TestAsyncPerl'
[junit]
[junit] Delete old Docker containers
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.83MB
[junit]
[junit] Step 1/11 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/11 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/11 : RUN cpanm -i Config::IniFiles
[junit] ---> Using cache
[junit] ---> d230f667e5eb
[junit] Step 4/11 : COPY ./ /kb/module
[junit] ---> 076c9ac49ed4
[junit] Step 5/11 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:41:31 UTC 2018"
[junit] ---> Running in 71a73b63db7d
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,893 bytes received 303 bytes 4,104,392.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:41:31 UTC 2018
[junit] Removing intermediate container 71a73b63db7d
[junit] ---> bb50f015b5a4
[junit] Step 6/11 : RUN mkdir -p /kb/module/work
[junit] ---> Running in a3361b81869d
[junit] Removing intermediate container a3361b81869d
[junit] ---> 8356e3811655
[junit] Step 7/11 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 28d43a3e9fd9
[junit] Removing intermediate container 28d43a3e9fd9
[junit] ---> 73b5a148f4aa
[junit] Step 8/11 : WORKDIR /kb/module
[junit] Removing intermediate container b5d60188f9b3
[junit] ---> 5b7927679211
[junit] Step 9/11 : RUN make all
[junit] ---> Running in 3331739ed659
[junit] kb-sdk compile TestAsyncPerl.spec \
[junit] --out lib \
[junit] --plclname TestAsyncPerl::TestAsyncPerlClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestAsyncPerl.TestAsyncPerlClient \
[junit] --javasrc src \
[junit] --java \
[junit] --plsrvname TestAsyncPerl::TestAsyncPerlServer \
[junit] --plimplname TestAsyncPerl::TestAsyncPerlImpl \
[junit] --plpsginame TestAsyncPerl.psgi;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> scripts/start_server.sh
[junit] echo 'plackup $script_dir/../lib/TestAsyncPerl.psgi' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_TestAsyncPerl_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_TestAsyncPerl_async_job.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> bin/run_TestAsyncPerl_async_job.sh
[junit] echo 'perl $script_dir/../lib/TestAsyncPerl/TestAsyncPerlServer.pm $1 $2 $3' >> bin/run_TestAsyncPerl_async_job.sh
[junit] chmod +x bin/run_TestAsyncPerl_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo "perl -e 'opendir my \$dh, \".\"; my @l = grep { /\\\\.pl\$/ } readdir \$dh; my \$ret=0; foreach my \$s (@l) { print(\"Running \".\$s.\"\\\\n\"); system(\"perl\", \$s) && do{\$ret=2; next;}; } exit(\$ret);'" >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 3331739ed659
[junit] ---> 2608545208de
[junit] Step 10/11 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 7c83e09202d5
[junit] Removing intermediate container 7c83e09202d5
[junit] ---> d2a1020d579a
[junit] Step 11/11 : CMD [ ]
[junit] ---> Running in b1bc0b6fd04e
[junit] Removing intermediate container b1bc0b6fd04e
[junit] ---> 3d804b19c723
[junit] Successfully built 3d804b19c723
[junit] Successfully tagged test/testasyncperl:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:180ad05032fd866f1434cbf0f3b30f7d782458a2c65e21765fb8be3336d9acb4
[junit] Deleted: sha256:50d96d7d5e866b0a9419196f8dacb8da0072325d21799ad9f0412ecc152eb8bc
[junit] Deleted: sha256:a02655e694fdb4164d299a50bc8a5a8a90c835a9053d8d7bc3367d2cff088f54
[junit] Deleted: sha256:fff026800e18f61fc3ba4c298bc50383f38359f35e0b5722b72b11bf019fc597
[junit] Deleted: sha256:bf45ddb6b3ffcbd97385bce0bfa9091f45473a7a45858a1a70444039cd56f388
[junit] Deleted: sha256:e13af161d97bc977fdc9127817ebfbe38816a154d2d385a817cf04939c23f9c9
[junit] Deleted: sha256:d23ab922b12813d3bc848261bb907d9ce99e1d084c565f1f77f42ce9f548c528
[junit] Deleted: sha256:0537f3be24dc8dbd7b2c902ec1f19a44449b12bcfa886caf288db956c9d9b687
[junit] Deleted: sha256:65d607430a1324a6f4aaab9707b6e8f5468d75f483b0ab9f6caceaa1c1593ead
[junit] Deleted: sha256:32c32d4cd40db5039065b78fa9222c0b3b35679c2a89cbd863f8a94a85e324a4
[junit] Deleted: sha256:d490bac29a162175c1e5ed9a86ad84ea0d48897678ffa6887e1e361bf7cbdb4f
[junit] Deleted: sha256:ae2fca40a3d1aa571e3225ca512409102a7fd606ae4458f239a93c6415e2d9b1
[junit] Deleted: sha256:6e525ad8a8bbc261a68a3ce678a3fe67f33a57bae91c5ffc88b11bdd14dd9df9
[junit] Java client -> Perl server (3068 ms)
[junit] Python client -> Perl server (3026 ms)
[junit] Perl client -> Perl server (18 ms)
[junit]
[junit] Test [testJavaAsyncService]
[junit] Done! Your module is available in the TestAsyncJava directory.
[junit] make[1]: Entering directory '/vagrant/kb_sdk'
[junit] git submodule update --init submodules/jars
[junit] ant -Djardir=submodules/jars/lib/jars/ -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /vagrant/kb_sdk/build.xml
[junit]
[junit] init:
[junit] [mkdir] Created dir: /vagrant/kb_sdk/classes
[junit]
[junit] compile:
[junit] [echo] Compiling with jar directory: submodules/jars/lib/jars/
[junit] [javac] Compiling 239 source files to /vagrant/kb_sdk/classes
[junit] [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
[junit] [javac] 1 warning
[junit] [copy] Copying 206 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase_module_builder2.jar
[junit] [copy] Copying 44 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase-kidl-parser.jar
[junit] [delete] Deleting directory /vagrant/kb_sdk/classes
[junit]
[junit] copy_kidl_jar:
[junit]
[junit] sh_bin:
[junit] [echo] Successfully built: /vagrant/kb_sdk/bin/kb-sdk
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/start_service.sh
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/stop_service.sh
[junit]
[junit] compile_and_bin:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 11 seconds
[junit] make[1]: Leaving directory '/vagrant/kb_sdk'
[junit] /vagrant/kb_sdk/bin/kb-sdk
[junit] make[1]: Entering directory '/vagrant/kb_sdk/TestAsyncJava'
[junit] kb-sdk compile TestAsyncJava.spec \
[junit] --out lib \
[junit] --plclname TestAsyncJava::TestAsyncJavaClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestAsyncJava.TestAsyncJavaClient \
[junit] --javasrc src \
[junit] --java \
[junit] --javasrv \
[junit] --javapackage .;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] make[1]: Leaving directory '/vagrant/kb_sdk/TestAsyncJava'
[junit]
[junit] Delete old Docker containers
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.881MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> a6529d0b14c0
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:41:31 UTC 2018"
[junit] ---> Running in 25293eac2c82
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,893 bytes received 303 bytes 4,104,392.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:41:31 UTC 2018
[junit] Removing intermediate container 25293eac2c82
[junit] ---> 52e67cf26d65
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in c6237766cd01
[junit] Removing intermediate container c6237766cd01
[junit] ---> 717c9fceec25
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in f69ede43952a
[junit] Removing intermediate container f69ede43952a
[junit] ---> 4607a5c397ac
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container 46b07ee6e921
[junit] ---> 9eb80912f3a8
[junit] Step 8/10 : RUN make all
[junit] ---> Running in 577fad9f7223
[junit] kb-sdk compile TestAsyncJava.spec \
[junit] --out lib \
[junit] --plclname TestAsyncJava::TestAsyncJavaClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestAsyncJava.TestAsyncJavaClient \
[junit] --javasrc src \
[junit] --java \
[junit] --javasrv \
[junit] --javapackage .;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] /kb/runtime/ant/bin/ant war -Djars.dir=/kb/deployment/lib/jars
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] compile:
[junit] [mkdir] Created dir: /kb/module/classes
[junit] [mkdir] Created dir: /kb/module/dist
[junit]  [exec] Result: 1
[junit]  [exec] Result: 128
[junit]  [exec] Result: 128
[junit]  [javac] Compiling 60 source files to /kb/module/classes
[junit] [copy] Copying 62 files to /kb/module/classes
[junit] [jar] Building jar: /kb/module/dist/TestAsyncJava.jar
[junit] [delete] Deleting directory /kb/module/classes
[junit]
[junit] war:
[junit] [mkdir] Created dir: /kb/module/dist/lib
[junit] [copy] Copying 17 files to /kb/module/dist/lib
[junit] [war] Building war: /kb/module/dist/TestAsyncJava.war
[junit] [delete] Deleting directory /kb/module/dist/lib
[junit] [mkdir] Created dir: /kb/module/scripts/webapps
[junit] [copy] Copying 1 file to /kb/module/scripts/webapps
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 2 seconds
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'cd scripts' >> scripts/start_server.sh
[junit] echo 'java -cp /kb/deployment/lib/jars/jetty/jetty-start-7.0.0.jar:/kb/deployment/lib/jars/jetty/jetty-all-7.0.0.jar:/kb/deployment/lib/jars/servlet/servlet-api-2.5.jar \
[junit] -DKB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg -Djetty.port=5000 org.eclipse.jetty.start.Main jetty.xml' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] /kb/runtime/ant/bin/ant build-executable-script -Djars.dir=/kb/deployment/lib/jars -Dexec.cmd.file=run_TestAsyncJava_async_job.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] build-executable-script:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] chmod +x bin/run_TestAsyncJava_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export JAVA_HOME=/usr/lib/jvm/java-7-oracle/' >> test/run_tests.sh
[junit] echo '/kb/runtime/ant/bin/ant test -Djars.dir=/kb/deployment/lib/jars' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 577fad9f7223
[junit] ---> 85b997cca969
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 35256c721726
[junit] Removing intermediate container 35256c721726
[junit] ---> ad26daa4652a
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in f01cc5a0b1ad
[junit] Removing intermediate container f01cc5a0b1ad
[junit] ---> 2c6f28d6ad32
[junit] Successfully built 2c6f28d6ad32
[junit] Successfully tagged test/testasyncjava:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:f650fbf2333009a79bc7a18a5714fca4d0ad327a8ba9b60afdd929ac0b859f1e
[junit] Deleted: sha256:cadc9215f2801c0772811c093de079d2a03cd45acca34f88e8a2a181a0af496a
[junit] Deleted: sha256:d861e1abf27eac5999efc9b1c3912e3af2df51084d2dba4ddeb60d1f362105aa
[junit] Deleted: sha256:afbefb91103303edbf4753c923787123ed2ff448cbea5a753ba1e6054f46e39d
[junit] Deleted: sha256:53562fd378d568d341421641703906f280dfcd406ca07779a0745488df87c8c1
[junit] Deleted: sha256:b1e45b924cf3ce8d93c36dccc252e2085573329aaeae52c8bd0a01429a2a3405
[junit] Deleted: sha256:3ba0ed17693767431475e1afff08280aef55f1282cbd786f166443b751dec003
[junit] Deleted: sha256:2c7b48f84d6dcadba856ad014e495ebeb21f0b353e78389f1e9496b1869c4753
[junit] Deleted: sha256:b32d5b07b2e57cc0ffd3367be2a23ba9cf356d7082dbbeab219ea0c0406e22e1
[junit] Deleted: sha256:e2d128fa26dd218481d7e1d4c36939e4332594a251e1e3e31c3dc876ff4f6591
[junit] Deleted: sha256:c7800985e84cdb434f0ce380b5aac447f36494dab5b5ec2b68eb72cc97537175
[junit] Deleted: sha256:463dd10e6a58777dd24e901365c6605ab1151ffef8fa892e334a0d083a32fe91
[junit] Deleted: sha256:4407d0d5c204c41dacd5aeb3803b79e7100295cae8d45e0faa6b7537efd824da
[junit] Java client -> Java server (4254 ms)
[junit] Python client -> Java server (4431 ms)
[junit] Perl client -> Java server (12 ms)
[junit]
[junit] Test [testPythonAsyncService]
[junit] Done! Your module is available in the TestAsyncPython directory.
[junit] make[1]: Entering directory '/vagrant/kb_sdk'
[junit] git submodule update --init submodules/jars
[junit] ant -Djardir=submodules/jars/lib/jars/ -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /vagrant/kb_sdk/build.xml
[junit]
[junit] init:
[junit] [mkdir] Created dir: /vagrant/kb_sdk/classes
[junit]
[junit] compile:
[junit] [echo] Compiling with jar directory: submodules/jars/lib/jars/
[junit] [javac] Compiling 239 source files to /vagrant/kb_sdk/classes
[junit] [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
[junit] [javac] 1 warning
[junit] [copy] Copying 206 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase_module_builder2.jar
[junit] [copy] Copying 44 files to /vagrant/kb_sdk/classes
[junit] [jar] Warning: us/kbase/jkidl/FileIncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/IncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/MemoizingIncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/ParseException.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/ParseNode.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SimpleCharStream.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SpecParser.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SpecParserConstants.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/SpecParserTokenManager.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/StaticIncludeProvider.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/Token.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/TokenMgrError.java modified in the future.
[junit] [jar] Warning: us/kbase/jkidl/Utils.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/JSONableVisitor.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationId.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationMetadata.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationRange.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotationSearch.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAnnotations.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbAuthdef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbBasicType.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbFuncdef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbList.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbMapping.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbModule.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbModuleComp.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbModuleDef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbParameter.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbScalar.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbService.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbStruct.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbStructItem.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbTuple.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbType.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbTypeInfo.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbTypedef.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KbUnspecifiedObject.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlNode.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlParseException.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlParser.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/KidlVisitor.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/SpecXmlHelper.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/Utils.java modified in the future.
[junit] [jar] Warning: us/kbase/kidl/test/KidlTest.java modified in the future.
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase-kidl-parser.jar
[junit] [delete] Deleting directory /vagrant/kb_sdk/classes
[junit]
[junit] copy_kidl_jar:
[junit]
[junit] sh_bin:
[junit] [echo] Successfully built: /vagrant/kb_sdk/bin/kb-sdk
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/start_service.sh
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/stop_service.sh
[junit]
[junit] compile_and_bin:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 10 seconds
[junit] make[1]: Leaving directory '/vagrant/kb_sdk'
[junit] /vagrant/kb_sdk/bin/kb-sdk
[junit] make[1]: Entering directory '/vagrant/kb_sdk/TestAsyncPython'
[junit] kb-sdk compile TestAsyncPython.spec \
[junit] --out lib \
[junit] --plclname TestAsyncPython::TestAsyncPythonClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestAsyncPython.TestAsyncPythonClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname TestAsyncPython.TestAsyncPythonServer \
[junit] --pyimplname TestAsyncPython.TestAsyncPythonImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] make[1]: Leaving directory '/vagrant/kb_sdk/TestAsyncPython'
[junit]
[junit] Delete old Docker containers
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.844MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> 147b3fc99909
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:41:31 UTC 2018"
[junit] ---> Running in faf350e61aa4
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:41:31 UTC 2018
[junit] Removing intermediate container faf350e61aa4
[junit] ---> 067ee1c67b97
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in bb1ad2af4740
[junit] Removing intermediate container bb1ad2af4740
[junit] ---> a7a93bb86fbc
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 8b48754a204d
[junit] Removing intermediate container 8b48754a204d
[junit] ---> bc2aa4b6cf71
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container 40a04ff9bc6e
[junit] ---> 8fd0cfecad5d
[junit] Step 8/10 : RUN make all
[junit] ---> Running in d04ce935395b
[junit] kb-sdk compile TestAsyncPython.spec \
[junit] --out lib \
[junit] --plclname TestAsyncPython::TestAsyncPythonClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestAsyncPython.TestAsyncPythonClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname TestAsyncPython.TestAsyncPythonServer \
[junit] --pyimplname TestAsyncPython.TestAsyncPythonImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> scripts/start_server.sh
[junit] echo 'uwsgi --master --processes 5 --threads 5 --http :5000 --wsgi-file $script_dir/../lib/TestAsyncPython/TestAsyncPythonServer.py' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_TestAsyncPython_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_TestAsyncPython_async_job.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> bin/run_TestAsyncPython_async_job.sh
[junit] echo 'python -u $script_dir/../lib/TestAsyncPython/TestAsyncPythonServer.py $1 $2 $3' >> bin/run_TestAsyncPython_async_job.sh
[junit] chmod +x bin/run_TestAsyncPython_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo 'python -m nose --with-coverage --cover-package=TestAsyncPython --cover-html --cover-html-dir=/kb/module/work/test_coverage --nocapture --nologcapture .' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container d04ce935395b
[junit] ---> 92b8c857a599
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 81f0e85dc10a
[junit] Removing intermediate container 81f0e85dc10a
[junit] ---> 97284aeb4c10
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in a81853fddafb
[junit] Removing intermediate container a81853fddafb
[junit] ---> 24c6ca7fed28
[junit] Successfully built 24c6ca7fed28
[junit] Successfully tagged test/testasyncpython:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:9cb9822baebd4c0534ef4eeb9c2ae1633d412338b869050068a671a7a56bf63a
[junit] Deleted: sha256:96f24030f39a929cd79459818f7a435cfe7d7eb7a39844b69fe5cc956dc1e694
[junit] Deleted: sha256:2ccb007955632e5989c4f1da762b6f40185cb1d19d129411e61147779fcb94fa
[junit] Deleted: sha256:228aa4ea49a37d6dd6f1145b29792a53e886d61ae31d2326501bdd3fadf623ed
[junit] Deleted: sha256:7bbccd242491757ba0b9145ca061b0b867268c9bdf09558ca1a0c43e2a342f1e
[junit] Deleted: sha256:af83b97e1d1c38519d54b001e2a91e0fdbfe9209b36c2deb595eec21fb0843a9
[junit] Deleted: sha256:a062d8e9463a17b10e8c62ed812bcbe416128b8af7a95d983f96b1bd50ec8f3e
[junit] Deleted: sha256:02a0e8805a93eaff2a6fbbe3c975e1c24c6bd2ddb18f78923cd30ae6c7fd8886
[junit] Deleted: sha256:47ff81e17cd8cfa1f1057f2058a2db7a2251e0be681c4b3d5a0760d94445b20b
[junit] Deleted: sha256:9621c3ea98a3d1165c0000876e4e7b19176e25142a53d984a9647e3471088b10
[junit] Deleted: sha256:2e3b1e790aa4e750f74b519b7b9ed43db38c78769ac0a4a3545c6a6ac718e319
[junit] Deleted: sha256:dcc5bed82897d495fd3f18a27f38a27acaffb36eecd90fd902fc2b5425804fbf
[junit] Deleted: sha256:a5aaff8dec9c306af65a14499ebf536749adee493e783510ca4504523bc65f84
[junit] Java client -> Python server (2720 ms)
[junit] Python client -> Python server (2939 ms)
[junit] Perl client -> Python server (24 ms)
[junit]
[junit] ------------- ---------------- ---------------
[junit] ------------- Standard Error -----------------
[junit] Perl client errors:
[junit] Can't locate JSON.pm in @INC (you may need to install the JSON module) (@INC contains: /vagrant/kb_sdk/lib/ /vagrant/kb_sdk/submodules/auth/Bio-KBase-Auth/lib /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit] BEGIN failed--compilation aborted at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit]
[junit] Perl client errors:
[junit] Can't locate JSON.pm in @INC (you may need to install the JSON module) (@INC contains: /vagrant/kb_sdk/lib/ /vagrant/kb_sdk/submodules/auth/Bio-KBase-Auth/lib /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit] BEGIN failed--compilation aborted at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit]
[junit] Perl client errors:
[junit] Can't locate JSON.pm in @INC (you may need to install the JSON module) (@INC contains: /vagrant/kb_sdk/lib/ /vagrant/kb_sdk/submodules/auth/Bio-KBase-Auth/lib /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit] BEGIN failed--compilation aborted at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit]
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testPerlAsyncService took 29.201 sec
[junit] FAILED
[junit] Perl client exit code should be 0 expected:<0> but was:<2>
[junit] junit.framework.AssertionFailedError: Perl client exit code should be 0 expected:<0> but was:<2>
[junit] at us.kbase.mobu.initializer.test.DockerClientServerTester.testClients(DockerClientServerTester.java:393)
[junit] at us.kbase.mobu.initializer.test.AsyncDockerTest.testAsyncClients(AsyncDockerTest.java:47)
[junit] at us.kbase.mobu.initializer.test.AsyncDockerTest.testPerlAsyncService(AsyncDockerTest.java:58)
[junit]
[junit] Testcase: testJavaAsyncService took 32.385 sec
[junit] FAILED
[junit] Perl client exit code should be 0 expected:<0> but was:<2>
[junit] junit.framework.AssertionFailedError: Perl client exit code should be 0 expected:<0> but was:<2>
[junit] at us.kbase.mobu.initializer.test.DockerClientServerTester.testClients(DockerClientServerTester.java:393)
[junit] at us.kbase.mobu.initializer.test.AsyncDockerTest.testAsyncClients(AsyncDockerTest.java:47)
[junit] at us.kbase.mobu.initializer.test.AsyncDockerTest.testJavaAsyncService(AsyncDockerTest.java:65)
[junit]
[junit] Testcase: testPythonAsyncService took 25.822 sec
[junit] FAILED
[junit] Perl client exit code should be 0 expected:<0> but was:<2>
[junit] junit.framework.AssertionFailedError: Perl client exit code should be 0 expected:<0> but was:<2>
[junit] at us.kbase.mobu.initializer.test.DockerClientServerTester.testClients(DockerClientServerTester.java:393)
[junit] at us.kbase.mobu.initializer.test.AsyncDockerTest.testAsyncClients(AsyncDockerTest.java:47)
[junit] at us.kbase.mobu.initializer.test.AsyncDockerTest.testPythonAsyncService(AsyncDockerTest.java:72)
[junit]
[junit] Running us.kbase.mobu.initializer.test.DynamicServiceTest
[junit] Testsuite: us.kbase.mobu.initializer.test.DynamicServiceTest
[junit] Tests run: 3, Failures: 3, Errors: 0, Skipped: 0, Time elapsed: 70.303 sec
[junit] Tests run: 3, Failures: 3, Errors: 0, Skipped: 0, Time elapsed: 70.303 sec
[junit] ------------- Standard Output ---------------
[junit] Test [testPerlDynamicService]
[junit] Done! Your module is available in the TestDynamicPerl directory.
[junit] make[1]: Entering directory '/vagrant/kb_sdk'
[junit] git submodule update --init submodules/jars
[junit] ant -Djardir=submodules/jars/lib/jars/ -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /vagrant/kb_sdk/build.xml
[junit]
[junit] init:
[junit] [mkdir] Created dir: /vagrant/kb_sdk/classes
[junit]
[junit] compile:
[junit] [echo] Compiling with jar directory: submodules/jars/lib/jars/
[junit] [javac] Compiling 239 source files to /vagrant/kb_sdk/classes
[junit] [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
[junit] [javac] 1 warning
[junit] [copy] Copying 206 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase_module_builder2.jar
[junit] [copy] Copying 44 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase-kidl-parser.jar
[junit] [delete] Deleting directory /vagrant/kb_sdk/classes
[junit]
[junit] copy_kidl_jar:
[junit]
[junit] sh_bin:
[junit] [echo] Successfully built: /vagrant/kb_sdk/bin/kb-sdk
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/start_service.sh
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/stop_service.sh
[junit]
[junit] compile_and_bin:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 11 seconds
[junit] make[1]: Leaving directory '/vagrant/kb_sdk'
[junit] /vagrant/kb_sdk/bin/kb-sdk
[junit] make[1]: Entering directory '/vagrant/kb_sdk/TestDynamicPerl'
[junit] kb-sdk compile TestDynamicPerl.spec \
[junit] --out lib \
[junit] --plclname TestDynamicPerl::TestDynamicPerlClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestDynamicPerl.TestDynamicPerlClient \
[junit] --javasrc src \
[junit] --java \
[junit] --plsrvname TestDynamicPerl::TestDynamicPerlServer \
[junit] --plimplname TestDynamicPerl::TestDynamicPerlImpl \
[junit] --plpsginame TestDynamicPerl.psgi;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] make[1]: Leaving directory '/vagrant/kb_sdk/TestDynamicPerl'
[junit]
[junit] Delete old Docker containers
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.831MB
[junit]
[junit] Step 1/11 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/11 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/11 : RUN cpanm -i Config::IniFiles
[junit] ---> Using cache
[junit] ---> d230f667e5eb
[junit] Step 4/11 : COPY ./ /kb/module
[junit] ---> 80e8b0d515a1
[junit] Step 5/11 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:43:02 UTC 2018"
[junit] ---> Running in 91e90037ffab
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:43:02 UTC 2018
[junit] Removing intermediate container 91e90037ffab
[junit] ---> 0cc42943f0e4
[junit] Step 6/11 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 40cbf4f6eb29
[junit] Removing intermediate container 40cbf4f6eb29
[junit] ---> b219db24b3c6
[junit] Step 7/11 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 6964ef9e65af
[junit] Removing intermediate container 6964ef9e65af
[junit] ---> 5577f3f58ae0
[junit] Step 8/11 : WORKDIR /kb/module
[junit] Removing intermediate container 490bab8e23d0
[junit] ---> 34937f2a51e9
[junit] Step 9/11 : RUN make all
[junit] ---> Running in 485a1e1162f7
[junit] kb-sdk compile TestDynamicPerl.spec \
[junit] --out lib \
[junit] --plclname TestDynamicPerl::TestDynamicPerlClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestDynamicPerl.TestDynamicPerlClient \
[junit] --javasrc src \
[junit] --java \
[junit] --plsrvname TestDynamicPerl::TestDynamicPerlServer \
[junit] --plimplname TestDynamicPerl::TestDynamicPerlImpl \
[junit] --plpsginame TestDynamicPerl.psgi;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> scripts/start_server.sh
[junit] echo 'plackup $script_dir/../lib/TestDynamicPerl.psgi' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_TestDynamicPerl_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_TestDynamicPerl_async_job.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> bin/run_TestDynamicPerl_async_job.sh
[junit] echo 'perl $script_dir/../lib/TestDynamicPerl/TestDynamicPerlServer.pm $1 $2 $3' >> bin/run_TestDynamicPerl_async_job.sh
[junit] chmod +x bin/run_TestDynamicPerl_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo "perl -e 'opendir my \$dh, \".\"; my @l = grep { /\\\\.pl\$/ } readdir \$dh; my \$ret=0; foreach my \$s (@l) { print(\"Running \".\$s.\"\\\\n\"); system(\"perl\", \$s) && do{\$ret=2; next;}; } exit(\$ret);'" >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 485a1e1162f7
[junit] ---> bea1ab4a3c4a
[junit] Step 10/11 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 86331f0a2431
[junit] Removing intermediate container 86331f0a2431
[junit] ---> db736e6ec232
[junit] Step 11/11 : CMD [ ]
[junit] ---> Running in 545879209ba9
[junit] Removing intermediate container 545879209ba9
[junit] ---> 62669418da9a
[junit] Successfully built 62669418da9a
[junit] Successfully tagged test/testdynamicperl:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:7a65dcf6bdd7834dd2a478a18ff432c249d5d77867a37a986f60c954e8967a7f
[junit] Deleted: sha256:1fce507b6e89a4e856c8fc109b937c1188b1a3171acb6fc4edfb3b2e79997900
[junit] Deleted: sha256:3797552f82ab7118f2092ca4f48fffb0ba98825e9ac30850062ebf211084cb93
[junit] Deleted: sha256:3c84a111b32eae0219de2c05a1bb1de7e30a422311f5fad1452affe4dd364f90
[junit] Deleted: sha256:97ce11b1ed8017ad3b4c6b2da660a4a843c633422b26c2c81bf8914915e7453d
[junit] Deleted: sha256:35cf0a38cebc31f40cc24962fe9b16e4454c2d09ee835f75d778775fc846ec4e
[junit] Deleted: sha256:d0e64a02302b0d62298c59ea0ad7289fada2e5c9d0dbd1196ebe0fca299d6cba
[junit] Deleted: sha256:4ad22573967a302b9d8d83ac5469b424675d39a17246e7a221731d52f57fa450
[junit] Deleted: sha256:0c8bbc2f8156a288fcd6dcda0daede6635c596d52ab1c54d2c70d386ce51edd4
[junit] Deleted: sha256:1e6c076167781c84f1a157b81b1f127318cd16708ceea17f91965a7dfe6643cb
[junit] Deleted: sha256:97eb6d7b7e8563aacd5da4a820688746811d32ac3aedbafe58ced05360182e21
[junit] Deleted: sha256:b8a5128d9a745eaf9a486151ab4c8ff51c53525cee2ad81bb452a207fecf4a9a
[junit] Deleted: sha256:c5644dcd87fb83889a4cf4f1b5f1e8a07509305424d5bb921eea303c86ef21a9
[junit]
[junit] Starting up dynamic service...
[junit] 1f8d75f8be5cc2b86fe8ab5d6c45cab5661374e0fe49c242cb9727ed8526a220
[junit] Java client -> Perl server (441 ms)
[junit] Python client -> Perl server (296 ms)
[junit] Perl client -> Perl server (19 ms)
[junit] test_testdynamicperl_1525995803934
[junit] Docker container test_testdynamicperl_1525995803934 was stopped and removed
[junit]
[junit] Test [testJavaDynamicService]
[junit] Done! Your module is available in the TestDynamicJava directory.
[junit] make[1]: Entering directory '/vagrant/kb_sdk'
[junit] git submodule update --init submodules/jars
[junit] ant -Djardir=submodules/jars/lib/jars/ -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /vagrant/kb_sdk/build.xml
[junit]
[junit] init:
[junit] [mkdir] Created dir: /vagrant/kb_sdk/classes
[junit]
[junit] compile:
[junit] [echo] Compiling with jar directory: submodules/jars/lib/jars/
[junit] [javac] Compiling 239 source files to /vagrant/kb_sdk/classes
[junit] [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
[junit] [javac] 1 warning
[junit] [copy] Copying 206 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase_module_builder2.jar
[junit] [copy] Copying 44 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase-kidl-parser.jar
[junit] [delete] Deleting directory /vagrant/kb_sdk/classes
[junit]
[junit] copy_kidl_jar:
[junit]
[junit] sh_bin:
[junit] [echo] Successfully built: /vagrant/kb_sdk/bin/kb-sdk
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/start_service.sh
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/stop_service.sh
[junit]
[junit] compile_and_bin:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 10 seconds
[junit] make[1]: Leaving directory '/vagrant/kb_sdk'
[junit] /vagrant/kb_sdk/bin/kb-sdk
[junit] make[1]: Entering directory '/vagrant/kb_sdk/TestDynamicJava'
[junit] kb-sdk compile TestDynamicJava.spec \
[junit] --out lib \
[junit] --plclname TestDynamicJava::TestDynamicJavaClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestDynamicJava.TestDynamicJavaClient \
[junit] --javasrc src \
[junit] --java \
[junit] --javasrv \
[junit] --javapackage .;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] make[1]: Leaving directory '/vagrant/kb_sdk/TestDynamicJava'
[junit]
[junit] Delete old Docker containers
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.881MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> 91bd69ab18f2
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:43:02 UTC 2018"
[junit] ---> Running in fe32d2ce8a44
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,893 bytes received 303 bytes 4,104,392.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:43:02 UTC 2018
[junit] Removing intermediate container fe32d2ce8a44
[junit] ---> 2d11aad85f22
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 7db726df31fb
[junit] Removing intermediate container 7db726df31fb
[junit] ---> 31baf7733694
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 5fb7bf8a53bc
[junit] Removing intermediate container 5fb7bf8a53bc
[junit] ---> ab5ba2c76cdc
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container 80170d23764f
[junit] ---> f7dfe7347518
[junit] Step 8/10 : RUN make all
[junit] ---> Running in fdcbe7456197
[junit] kb-sdk compile TestDynamicJava.spec \
[junit] --out lib \
[junit] --plclname TestDynamicJava::TestDynamicJavaClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestDynamicJava.TestDynamicJavaClient \
[junit] --javasrc src \
[junit] --java \
[junit] --javasrv \
[junit] --javapackage .;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] /kb/runtime/ant/bin/ant war -Djars.dir=/kb/deployment/lib/jars
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] compile:
[junit] [mkdir] Created dir: /kb/module/classes
[junit] [mkdir] Created dir: /kb/module/dist
[junit]  [exec] Result: 1
[junit]  [exec] Result: 128
[junit]  [exec] Result: 128
[junit]  [javac] Compiling 60 source files to /kb/module/classes
[junit] [copy] Copying 62 files to /kb/module/classes
[junit] [jar] Building jar: /kb/module/dist/TestDynamicJava.jar
[junit] [delete] Deleting directory /kb/module/classes
[junit]
[junit] war:
[junit] [mkdir] Created dir: /kb/module/dist/lib
[junit] [copy] Copying 17 files to /kb/module/dist/lib
[junit] [war] Building war: /kb/module/dist/TestDynamicJava.war
[junit] [delete] Deleting directory /kb/module/dist/lib
[junit] [mkdir] Created dir: /kb/module/scripts/webapps
[junit] [copy] Copying 1 file to /kb/module/scripts/webapps
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 2 seconds
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'cd scripts' >> scripts/start_server.sh
[junit] echo 'java -cp /kb/deployment/lib/jars/jetty/jetty-start-7.0.0.jar:/kb/deployment/lib/jars/jetty/jetty-all-7.0.0.jar:/kb/deployment/lib/jars/servlet/servlet-api-2.5.jar \
[junit] -DKB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg -Djetty.port=5000 org.eclipse.jetty.start.Main jetty.xml' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] /kb/runtime/ant/bin/ant build-executable-script -Djars.dir=/kb/deployment/lib/jars -Dexec.cmd.file=run_TestDynamicJava_async_job.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] build-executable-script:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] chmod +x bin/run_TestDynamicJava_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export JAVA_HOME=/usr/lib/jvm/java-7-oracle/' >> test/run_tests.sh
[junit] echo '/kb/runtime/ant/bin/ant test -Djars.dir=/kb/deployment/lib/jars' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container fdcbe7456197
[junit] ---> 4dc73e25388f
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 58bd8cb7c1cc
[junit] Removing intermediate container 58bd8cb7c1cc
[junit] ---> 4f3de79fb644
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in 29f9a82dec03
[junit] Removing intermediate container 29f9a82dec03
[junit] ---> 2a5ba05fd3b2
[junit] Successfully built 2a5ba05fd3b2
[junit] Successfully tagged test/testdynamicjava:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:acafdb58ff9b13173116c4b7ad74f8706c09626284cc1826a57ae665d1187300
[junit] Deleted: sha256:1f81d82549ed1653b26012962595252f2376b388f1c7369f2328012a8d7f441b
[junit] Deleted: sha256:bee8af1677bb66c54b1feb168e1e77e38021d0bb9e4c477c98da9fce6e5d1bd8
[junit] Deleted: sha256:cdab6bfb9a93aa8616d1ff3b189f5268ce7335360dc7b6b8bfcb2d0d3db4c5b2
[junit] Deleted: sha256:e4609bd701f0f547ada573f5d8fcd294167024056a8f126fbd4a377fe764b521
[junit] Deleted: sha256:4e1312a39f8abfc1f1dde5733827704cd249aae1a589de647db9681f97f46ffc
[junit] Deleted: sha256:58527aacb9aa479b42e8e89f33ce3f0f96bb2cdfe8b887dfc7371c9d17b1edd4
[junit] Deleted: sha256:6a5d04d9264b98f2e8963e0ad2461ebbac64892041e317725968afb900c64763
[junit] Deleted: sha256:da9b97cd79b94d4f9b7d09e495262b0e81de00668d832ff3c2c6cf44d570d009
[junit] Deleted: sha256:67ee1e7af8149daad74740160a889c26c4268920778cc409990388fecc725d55
[junit] Deleted: sha256:4857ff84bb0a42df12e64883d5b47516678b88bf1559ec140164fffc4e65f9a6
[junit] Deleted: sha256:994e1e40c0cd9019708a2bd5b35e444efb7e29309a57ef53e87c97a7b8ee5e58
[junit] Deleted: sha256:5a688de3c97f6c448371a0f00afb18d5206c7844a9b2ed1d546943bf3a550c21
[junit]
[junit] Starting up dynamic service...
[junit] 68d0073c5e81b849c105eabe33f652d68375e73f9ae74bc76aab1d07ed3e616a
[junit] Java client -> Java server (902 ms)
[junit] Python client -> Java server (180 ms)
[junit] Perl client -> Java server (20 ms)
[junit] test_testdynamicjava_1525995828523
[junit] Docker container test_testdynamicjava_1525995828523 was stopped and removed
[junit]
[junit] Test [testPythonDynamicService]
[junit] Done! Your module is available in the TestDynamicPython directory.
[junit] make[1]: Entering directory '/vagrant/kb_sdk'
[junit] git submodule update --init submodules/jars
[junit] ant -Djardir=submodules/jars/lib/jars/ -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /vagrant/kb_sdk/build.xml
[junit]
[junit] init:
[junit] [mkdir] Created dir: /vagrant/kb_sdk/classes
[junit]
[junit] compile:
[junit] [echo] Compiling with jar directory: submodules/jars/lib/jars/
[junit] [javac] Warning: us/kbase/mobu/git.properties modified in the future.
[junit] [javac] Compiling 239 source files to /vagrant/kb_sdk/classes
[junit] [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
[junit] [javac] 1 warning
[junit] [copy] Copying 206 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase_module_builder2.jar
[junit] [copy] Copying 44 files to /vagrant/kb_sdk/classes
[junit] [jar] Building jar: /vagrant/kb_sdk/dist/kbase-kidl-parser.jar
[junit] [delete] Deleting directory /vagrant/kb_sdk/classes
[junit]
[junit] copy_kidl_jar:
[junit]
[junit] sh_bin:
[junit] [echo] Successfully built: /vagrant/kb_sdk/bin/kb-sdk
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/start_service.sh
[junit] [echo] Successfully built: /vagrant/kb_sdk/test_scripts/ee_mock_service/stop_service.sh
[junit]
[junit] compile_and_bin:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 10 seconds
[junit] make[1]: Leaving directory '/vagrant/kb_sdk'
[junit] /vagrant/kb_sdk/bin/kb-sdk
[junit] make[1]: Entering directory '/vagrant/kb_sdk/TestDynamicPython'
[junit] kb-sdk compile TestDynamicPython.spec \
[junit] --out lib \
[junit] --plclname TestDynamicPython::TestDynamicPythonClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestDynamicPython.TestDynamicPythonClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname TestDynamicPython.TestDynamicPythonServer \
[junit] --pyimplname TestDynamicPython.TestDynamicPythonImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] make[1]: Leaving directory '/vagrant/kb_sdk/TestDynamicPython'
[junit]
[junit] Delete old Docker containers
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.844MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> 269bc2447956
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:43:02 UTC 2018"
[junit] ---> Running in c336c96165d7
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:43:02 UTC 2018
[junit] Removing intermediate container c336c96165d7
[junit] ---> 6616de347800
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 5e4ffb8bab4c
[junit] Removing intermediate container 5e4ffb8bab4c
[junit] ---> c1554d7b0d30
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in c88406200675
[junit] Removing intermediate container c88406200675
[junit] ---> 24e48cb67d26
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container 5e6657068631
[junit] ---> 32036a4fe34e
[junit] Step 8/10 : RUN make all
[junit] ---> Running in 49735a2734a6
[junit] kb-sdk compile TestDynamicPython.spec \
[junit] --out lib \
[junit] --plclname TestDynamicPython::TestDynamicPythonClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TestDynamicPython.TestDynamicPythonClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname TestDynamicPython.TestDynamicPythonServer \
[junit] --pyimplname TestDynamicPython.TestDynamicPythonImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> scripts/start_server.sh
[junit] echo 'uwsgi --master --processes 5 --threads 5 --http :5000 --wsgi-file $script_dir/../lib/TestDynamicPython/TestDynamicPythonServer.py' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_TestDynamicPython_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_TestDynamicPython_async_job.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> bin/run_TestDynamicPython_async_job.sh
[junit] echo 'python -u $script_dir/../lib/TestDynamicPython/TestDynamicPythonServer.py $1 $2 $3' >> bin/run_TestDynamicPython_async_job.sh
[junit] chmod +x bin/run_TestDynamicPython_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo 'python -m nose --with-coverage --cover-package=TestDynamicPython --cover-html --cover-html-dir=/kb/module/work/test_coverage --nocapture --nologcapture .' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 49735a2734a6
[junit] ---> 85716715b1ed
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in bd2807104dc6
[junit] Removing intermediate container bd2807104dc6
[junit] ---> 0bf9c5f587ee
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in e99bbae08a6f
[junit] Removing intermediate container e99bbae08a6f
[junit] ---> 552f39396177
[junit] Successfully built 552f39396177
[junit] Successfully tagged test/testdynamicpython:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:60bb40314720ebfb8d314941feea0b9e4f850a5bfce50ceecbd932a444423c82
[junit] Deleted: sha256:51f8d3c69a2a4d323fc1de83d33960deb06e52a521fdbe29ddcba1df76e0d059
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[junit] Deleted: sha256:a980199b5ce0e60e70f74f531a1e3a9e0a2ec8092335124e31923d480cb0d9f7
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[junit] Deleted: sha256:32a3009445adcfd039302cffaaffa20471cd6d5054cc73a3681397022bd41f83
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[junit] Deleted: sha256:84608da7e042dd50ff12d765103f58203207cac8796e7dc826d9b6ad74a64b8c
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[junit] Deleted: sha256:e3d57400e9bde3d1b39a39ef866d152ed8e143796e5f219e926dd9b806494f43
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[junit]
[junit] Starting up dynamic service...
[junit] 95cf1d6fda769e6433f656eeb287f5cf5b3cb901d1ba9a2bc5bd8cf08509d7f4
[junit] Java client -> Python server (126 ms)
[junit] Python client -> Python server (258 ms)
[junit] Perl client -> Python server (16 ms)
[junit] test_testdynamicpython_1525995850183
[junit] Docker container test_testdynamicpython_1525995850183 was stopped and removed
[junit]
[junit] ------------- ---------------- ---------------
[junit] ------------- Standard Error -----------------
[junit] Perl client errors:
[junit] Can't locate JSON.pm in @INC (you may need to install the JSON module) (@INC contains: /vagrant/kb_sdk/lib/ /vagrant/kb_sdk/submodules/auth/Bio-KBase-Auth/lib /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit] BEGIN failed--compilation aborted at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit]
[junit] HTTP::Server::PSGI: Accepting connections at http://0:5000/
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/scripts/../lib/TestDynamicPerl/TestDynamicPerlServer.pm line 274.
[junit] 172.17.0.1 - - [10/May/2018:23:43:25 +0000] "POST / HTTP/1.1" 200 69 "-" "Java/1.8.0_162"
[junit] Use of uninitialized value in string eq at /kb/deployment/lib/Bio/KBase/AuthToken.pm line 228.
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/scripts/../lib/TestDynamicPerl/TestDynamicPerlServer.pm line 274.
[junit] 172.17.0.1 - - [10/May/2018:23:43:25 +0000] "POST / HTTP/1.1" 500 214 "-" "Java/1.8.0_162"
[junit] Use of uninitialized value in string eq at /kb/deployment/lib/Bio/KBase/AuthToken.pm line 228.
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/scripts/../lib/TestDynamicPerl/TestDynamicPerlServer.pm line 274.
[junit] 172.17.0.1 - - [10/May/2018:23:43:26 +0000] "POST / HTTP/1.1" 200 63 "-" "python-requests/2.18.4"
[junit] Use of uninitialized value in string eq at /kb/deployment/lib/Bio/KBase/AuthToken.pm line 228.
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/scripts/../lib/TestDynamicPerl/TestDynamicPerlServer.pm line 274.
[junit] 172.17.0.1 - - [10/May/2018:23:43:26 +0000] "POST / HTTP/1.1" 500 211 "-" "python-requests/2.18.4"
[junit] Perl client errors:
[junit] Can't locate JSON.pm in @INC (you may need to install the JSON module) (@INC contains: /vagrant/kb_sdk/lib/ /vagrant/kb_sdk/submodules/auth/Bio-KBase-Auth/lib /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit] BEGIN failed--compilation aborted at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit]
[junit] 2018-05-10 23:43:49.200:INFO::Logging to StdErrLog::DEBUG=false via org.eclipse.jetty.util.log.StdErrLog
[junit] 2018-05-10 23:43:49.274:INFO::jetty-7.0.0.v20091005
[junit] 2018-05-10 23:43:49.296:INFO::Extract jar:file:/kb/module/scripts/webapps/root.war!/ to /kb/module/scripts/temp/webapp
[junit] 2018-05-10 23:43:49.469:INFO::NO JSP Support for /, did not find org.apache.jasper.servlet.JspServlet
[junit] 2018-05-10 23:43:49.799:INFO::Opened /kb/module/scripts/2018_05_10.request.log
[junit] 2018-05-10 23:43:49.829:INFO::Started [email protected]:5000
[junit] Perl client errors:
[junit] Can't locate JSON.pm in @INC (you may need to install the JSON module) (@INC contains: /vagrant/kb_sdk/lib/ /vagrant/kb_sdk/submodules/auth/Bio-KBase-Auth/lib /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit] BEGIN failed--compilation aborted at /vagrant/kb_sdk/test_scripts/perl/test-client.pl line 10.
[junit]
[junit] *** Starting uWSGI 2.0.11.1 (64bit) on [Thu May 10 23:44:10 2018] ***
[junit] compiled with version: 4.8.4 on 25 August 2015 01:58:47
[junit] os: Linux-4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:04 UTC 2018
[junit] nodename: 95cf1d6fda76
[junit] machine: x86_64
[junit] clock source: unix
[junit] pcre jit disabled
[junit] detected number of CPU cores: 2
[junit] current working directory: /kb/module
[junit] detected binary path: /usr/local/bin/uwsgi
[junit] uWSGI running as root, you can use --uid/--gid/--chroot options
[junit] *** WARNING: you are running uWSGI as root !!! (use the --uid flag) ***
[junit] your memory page size is 4096 bytes
[junit] detected max file descriptor number: 1048576
[junit] lock engine: pthread robust mutexes
[junit] thunder lock: disabled (you can enable it with --thunder-lock)
[junit] uWSGI http bound on :5000 fd 4
[junit] uwsgi socket 0 bound to TCP address 127.0.0.1:43825 (port auto-assigned) fd 3
[junit] Python version: 2.7.6 (default, Jun 22 2015, 18:01:27) [GCC 4.8.2]
[junit] Python main interpreter initialized at 0x1b5b930
[junit] python threads support enabled
[junit] your server socket listen backlog is limited to 100 connections
[junit] your mercy for graceful operations on workers is 60 seconds
[junit] mapped 683904 bytes (667 KB) for 25 cores
[junit] *** Operational MODE: preforking+threaded ***
[junit] WSGI app 0 (mountpoint='') ready in 0 seconds on interpreter 0x1b5b930 pid: 11 (default app)
[junit] *** uWSGI is running in multiple interpreter mode ***
[junit] spawned uWSGI master process (pid: 11)
[junit] spawned uWSGI worker 1 (pid: 18, cores: 5)
[junit] spawned uWSGI worker 2 (pid: 19, cores: 5)
[junit] spawned uWSGI worker 3 (pid: 20, cores: 5)
[junit] spawned uWSGI worker 4 (pid: 25, cores: 5)
[junit] spawned uWSGI worker 5 (pid: 26, cores: 5)
[junit] spawned uWSGI http 1 (pid: 28)
[junit] [pid: 18|app: 0|req: 1/1] 172.17.0.1 () {36 vars in 501 bytes} [Thu May 10 23:44:11 2018] POST / => generated 73 bytes in 57 msecs (HTTP/1.1 200) 4 headers in 148 bytes (1 switches on core 0)
[junit] [pid: 20|app: 0|req: 1/2] 172.17.0.1 () {36 vars in 501 bytes} [Thu May 10 23:44:11 2018] POST / => generated 466 bytes in 55 msecs (HTTP/1.1 500) 4 headers in 168 bytes (1 switches on core 0)
[junit] [pid: 18|app: 0|req: 2/3] 172.17.0.1 () {36 vars in 449 bytes} [Thu May 10 23:44:11 2018] POST / => generated 68 bytes in 0 msecs (HTTP/1.1 200) 4 headers in 148 bytes (1 switches on core 4)
[junit] [pid: 19|app: 0|req: 1/4] 172.17.0.1 () {36 vars in 449 bytes} [Thu May 10 23:44:11 2018] POST / => generated 461 bytes in 74 msecs (HTTP/1.1 500) 4 headers in 168 bytes (1 switches on core 0)
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testPerlDynamicService took 22.69 sec
[junit] FAILED
[junit] Perl client exit code should be 0 expected:<0> but was:<2>
[junit] junit.framework.AssertionFailedError: Perl client exit code should be 0 expected:<0> but was:<2>
[junit] at us.kbase.mobu.initializer.test.DockerClientServerTester.testClients(DockerClientServerTester.java:393)
[junit] at us.kbase.mobu.initializer.test.DynamicServiceTest.testDynamicClients(DynamicServiceTest.java:85)
[junit] at us.kbase.mobu.initializer.test.DynamicServiceTest.testPerlDynamicService(DynamicServiceTest.java:105)
[junit]
[junit] Testcase: testJavaDynamicService took 24.787 sec
[junit] FAILED
[junit] Perl client exit code should be 0 expected:<0> but was:<2>
[junit] junit.framework.AssertionFailedError: Perl client exit code should be 0 expected:<0> but was:<2>
[junit] at us.kbase.mobu.initializer.test.DockerClientServerTester.testClients(DockerClientServerTester.java:393)
[junit] at us.kbase.mobu.initializer.test.DynamicServiceTest.testDynamicClients(DynamicServiceTest.java:85)
[junit] at us.kbase.mobu.initializer.test.DynamicServiceTest.testJavaDynamicService(DynamicServiceTest.java:114)
[junit]
[junit] Testcase: testPythonDynamicService took 20.955 sec
[junit] FAILED
[junit] Perl client exit code should be 0 expected:<0> but was:<2>
[junit] junit.framework.AssertionFailedError: Perl client exit code should be 0 expected:<0> but was:<2>
[junit] at us.kbase.mobu.initializer.test.DockerClientServerTester.testClients(DockerClientServerTester.java:393)
[junit] at us.kbase.mobu.initializer.test.DynamicServiceTest.testDynamicClients(DynamicServiceTest.java:85)
[junit] at us.kbase.mobu.initializer.test.DynamicServiceTest.testPythonDynamicService(DynamicServiceTest.java:123)
[junit]
[junit] Running us.kbase.mobu.initializer.test.InitializerTest
[junit] Testsuite: us.kbase.mobu.initializer.test.InitializerTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.163 sec
[junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.163 sec
[junit] ------------- Standard Output ---------------
[junit] Done! Your module is available in the temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing directory.
[junit] Done! Your module is available in the temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing
[junit] make (required after making changes to a_simple_module_for_unit_testing.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] Done! Your module is available in the temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing
[junit] make (required after making changes to a_simple_module_for_unit_testing.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] Done! Your module is available in the temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing
[junit] make (required after making changes to a_simple_module_for_unit_testing.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] ************************************************************************
[junit] WARNING: R support is deprecated and will be removed in a future release
[junit] ************************************************************************
[junit] Done! Your module is available in the temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing
[junit] make (required after making changes to a_simple_module_for_unit_testing.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] Done! Your module is available in the temp_test/init_test_5332376563181388475/a_simple_module_for_unit_testing directory.
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testModuleWithUser took 1.973 sec
[junit] Testcase: testModuleAlreadyExists took 0.003 sec
[junit] Testcase: testNoNameModule took 0 sec
[junit] Testcase: testPerlModuleExample took 1.156 sec
[junit] Testcase: testPythonModuleExample took 0.785 sec
[junit] Testcase: testJavaModuleExample took 1.214 sec
[junit] Testcase: testRModuleExample took 0.719 sec
[junit] Testcase: testSimpleModule took 0.28 sec
[junit] Running us.kbase.mobu.installer.test.ClientInstallerTest
[junit] Testsuite: us.kbase.mobu.installer.test.ClientInstallerTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.271 sec
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.271 sec
[junit] ------------- Standard Output ---------------
[junit] Done! Your module is available in the temp_test/test_install_8268089040130240737/PythonModule directory.
[junit] Done! Your module is available in the temp_test/test_install_8268089040130240737/JavaModule directory.
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testPython took 2.171 sec
[junit] Testcase: testJava took 0.791 sec
[junit] Running us.kbase.mobu.installer.test.DepsTest
[junit] Testsuite: us.kbase.mobu.installer.test.DepsTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.654 sec
[junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.654 sec
[junit]
[junit] Testcase: testFromScratch took 0.582 sec
[junit] Testcase: testAdding took 0.021 sec
[junit] Testcase: testOverriding took 0.011 sec
[junit] Running us.kbase.mobu.renamer.test.ModuleRenamerTest
[junit] Testsuite: us.kbase.mobu.renamer.test.ModuleRenamerTest
[junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 110.528 sec
[junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 110.528 sec
[junit] ------------- Standard Output ---------------
[junit] Done! Your module is available in the a_SimpleModule_for_unit_testing_java directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd a_SimpleModule_for_unit_testing_java
[junit] make (required after making changes to a_SimpleModule_for_unit_testing_java.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/kbase.yml
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/Makefile
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/a_SimpleModule_for_unit_testing_java.spec -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/TargetModule_for_unit_testing_java.spec
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/deploy.cfg
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/scripts/run_async.sh
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/asimplemoduleforunittestingjava/FilterContigsParams.java -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/targetmoduleforunittestingjava/FilterContigsParams.java
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/asimplemoduleforunittestingjava/FilterContigsResults.java -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/targetmoduleforunittestingjava/FilterContigsResults.java
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/asimplemoduleforunittestingjava/ASimpleModuleForUnitTestingJavaClient.java -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/targetmoduleforunittestingjava/TargetModuleForUnitTestingJavaClient.java
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/asimplemoduleforunittestingjava/ASimpleModuleForUnitTestingJavaServer.java -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/lib/src/targetmoduleforunittestingjava/TargetModuleForUnitTestingJavaServer.java
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/ui/narrative/methods/filter_contigs/spec.json
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/test/src/asimplemoduleforunittestingjava/test/ASimpleModuleForUnitTestingJavaServerTest.java
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/test_local/run_tests.sh
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/test_local/run_bash.sh
[junit]
[junit] Validating module in (/vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/a_SimpleModule_for_unit_testing_java/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] e71ce6e73786
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.977MB
[junit]
[junit] Step 1/11 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/11 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/11 : RUN cd /kb/deployment/lib/jars && wget https://downloads.sourceforge.net/project/jfasta/releases/jfasta-2.2.0/jfasta-2.2.0-jar-with-dependencies.jar
[junit] ---> Using cache
[junit] ---> 3fa51fc1d950
[junit] Step 4/11 : COPY ./ /kb/module
[junit] ---> 928bf3937391
[junit] Step 5/11 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:44:29 UTC 2018"
[junit] ---> Running in 748e714e0c93
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,908 bytes received 306 bytes 4,104,428.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:44:29 UTC 2018
[junit] Removing intermediate container 748e714e0c93
[junit] ---> 4d0bd49fd211
[junit] Step 6/11 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 01e926ef0754
[junit] Removing intermediate container 01e926ef0754
[junit] ---> 53d7c6ca4c30
[junit] Step 7/11 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 57ef28524351
[junit] Removing intermediate container 57ef28524351
[junit] ---> c8c5944f47c4
[junit] Step 8/11 : WORKDIR /kb/module
[junit] Removing intermediate container 719e555b9e92
[junit] ---> 3b2f12ab2e11
[junit] Step 9/11 : RUN make all
[junit] ---> Running in 87bec9fea82b
[junit] kb-sdk compile TargetModule_for_unit_testing_java.spec \
[junit] --out lib \
[junit] --plclname TargetModule_for_unit_testing_java::TargetModule_for_unit_testing_javaClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TargetModule_for_unit_testing_java.TargetModule_for_unit_testing_javaClient \
[junit] --javasrc src \
[junit] --java \
[junit] --javasrv \
[junit] --javapackage .;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] /kb/runtime/ant/bin/ant war -Djars.dir=/kb/deployment/lib/jars
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] compile:
[junit] [mkdir] Created dir: /kb/module/classes
[junit] [mkdir] Created dir: /kb/module/dist
[junit]  [exec] Result: 1
[junit]  [exec] Result: 128
[junit]  [exec] Result: 128
[junit]  [javac] Compiling 77 source files to /kb/module/classes
[junit] [copy] Copying 80 files to /kb/module/classes
[junit] [jar] Building jar: /kb/module/dist/ASimpleModuleForUnitTestingJava.jar
[junit] [delete] Deleting directory /kb/module/classes
[junit]
[junit] war:
[junit] [mkdir] Created dir: /kb/module/dist/lib
[junit] [copy] Copying 18 files to /kb/module/dist/lib
[junit] [war] Building war: /kb/module/dist/ASimpleModuleForUnitTestingJava.war
[junit] [delete] Deleting directory /kb/module/dist/lib
[junit] [mkdir] Created dir: /kb/module/scripts/webapps
[junit] [copy] Copying 1 file to /kb/module/scripts/webapps
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 2 seconds
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'cd scripts' >> scripts/start_server.sh
[junit] echo 'java -cp /kb/deployment/lib/jars/jetty/jetty-start-7.0.0.jar:/kb/deployment/lib/jars/jetty/jetty-all-7.0.0.jar:/kb/deployment/lib/jars/servlet/servlet-api-2.5.jar \
[junit] -DKB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg -Djetty.port=5000 org.eclipse.jetty.start.Main jetty.xml' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] /kb/runtime/ant/bin/ant build-executable-script -Djars.dir=/kb/deployment/lib/jars -Dexec.cmd.file=run_TargetModule_for_unit_testing_java_async_job.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] build-executable-script:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] chmod +x bin/run_TargetModule_for_unit_testing_java_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export JAVA_HOME=/usr/lib/jvm/java-7-oracle/' >> test/run_tests.sh
[junit] echo '/kb/runtime/ant/bin/ant test -Djars.dir=/kb/deployment/lib/jars' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 87bec9fea82b
[junit] ---> 62fc7a3e888a
[junit] Step 10/11 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 3f4cde7435b8
[junit] Removing intermediate container 3f4cde7435b8
[junit] ---> 2a2b52428e04
[junit] Step 11/11 : CMD [ ]
[junit] ---> Running in 9c237a7faf33
[junit] Removing intermediate container 9c237a7faf33
[junit] ---> f28fd8862728
[junit] Successfully built f28fd8862728
[junit] Successfully tagged test/targetmodule_for_unit_testing_java:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:953a0eeaf909bc0b699950e3531207db9d33c3d52331fd61055aef178945a253
[junit] Deleted: sha256:b3560fd703223acbfc7e718dfa4a376728ddc4368766600724c8ae458ab6c19a
[junit] Deleted: sha256:3da527e33379252887f7fff785434994460edb840a1b3a9c64ad6fda04687409
[junit] Deleted: sha256:d7dc88e5c6eb2ac06bd602f8ea91eea57b4563ce700641ac7643f906a0434975
[junit] Deleted: sha256:f6fc084a4d84673c245e722d745fa8d6af8bd55fe44226b166fead3b036177bf
[junit] Deleted: sha256:22f1926dce5f5c4aa972731c0bca6ab0facb65e3bfefb6385426f2989e95c0f4
[junit] Deleted: sha256:48926f1801db449b70ff6bd6a2ada157dbc12c6de1f2101b5d13d56a41c2845f
[junit] Deleted: sha256:647001ccf014cd0b0db7ad34e3a413ca350bb01ea4bdfdd6eb68924d6e124681
[junit] Deleted: sha256:cc426c85d617bfcd005eb5080a1a16e63ca8f5823d0382a745dcd81dd7bc22ac
[junit] Deleted: sha256:b8121d9d17db1f823b0e38a88b32abc8053d34fa460dfcaa0b3a437e37355a43
[junit] Deleted: sha256:3ee219f5c627fe7fc7fd2740bcb071be5e63800d75841908b772fcf8e45deb87
[junit] Deleted: sha256:417d182812f4a5bf9d5feef6983096ed8a2a7dcce2cfdb80ae1a7d78975e0a5c
[junit] Deleted: sha256:aaa57ee00d7c47d883c13a5d287ab55af6c09dbe853f02ea6b62e69a60cefd0d
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] test:
[junit] [junit] Running asimplemoduleforunittestingjava.test.ASimpleModuleForUnitTestingJavaServerTest
[junit] [junit] Testsuite: asimplemoduleforunittestingjava.test.ASimpleModuleForUnitTestingJavaServerTest
[junit] 1525995882.56 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: f651b01f-df2c-4374-90fd-ed4d9d9e4bc0
[junit] 1525995882.67 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_TargetModuleForUnitTestingJava_1525995882345'}
[junit] validating parameters
[junit] staging input files
[junit] 1525995883.40 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 41abde25-8911-4743-9446-a21606c375b4
[junit] 1525995883.47 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995884.27: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525995884.86 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: a71a9ecb-3953-4be0-b43d-70fe04528445
[junit] 1525995884.86 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995885.61: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995885.69: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525995885.9: uploading done into shock node: 3fab212f-9451-4fc8-aa0e-0acaabf324e7
[junit] 1525995886.29 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 8a5b2421-c127-4f07-86b5-dc775a66bd10
[junit] 1525995886.29 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995887.07: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525995887.71 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: defb7949-5ffa-4276-8155-e08543922be4
[junit] 1525995887.71 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995888.5: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995890.24 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: cc1157fa-1f2f-4d94-a122-acf4096c2173
[junit] 1525995890.24 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (32654/1/1)
[junit] 1525995891.07 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: 7ca1dc4b-3e03-4394-af0e-d2364a61b8b2
[junit] 1525995891.07 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995891.82: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995892.52 - CallbackServer: Subjob method: DataFileUtil.shock_to_file JobID: 7cc2e446-7b65-4c6e-9628-8e3bf7b99d13
[junit] 1525995892.52 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995893.21: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995893.31: Fetching info for handle: KBH_252108
[junit] 1525995893.41: downloading shock node 3fab212f-9451-4fc8-aa0e-0acaabf324e7 into file: /kb/module/work/tmp/TestAssembly.fa
[junit] 1525995893.45: downloading done
[junit] 1525995895.30 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: c330f258-56be-4026-9198-59be3b69d33c
[junit] 1525995895.30 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/filtered.fasta'},
[junit] u'workspace_name': u'test_TargetModuleForUnitTestingJava_1525995882345'}
[junit] validating parameters
[junit] staging input files
[junit] 1525995895.91 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: c266771f-1325-4e9b-a5a4-c0b0a567540c
[junit] 1525995895.91 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995896.62: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/filtered.fasta
[junit] - parsed 2 contigs, 22bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/filtered.fasta) to SHOCK
[junit] 1525995897.35 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 5afc96dc-5d09-4d72-8311-312a8bff58a9
[junit] 1525995897.35 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995898.04: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995898.1: uploading file /kb/module/work/tmp/filtered.fasta into shock node
[junit] 1525995898.34: uploading done into shock node: 1cda0138-04c9-42af-829d-de79a74b8c0b
[junit] 1525995898.78 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: a911dbcf-2213-4d81-a77b-60f8c8cd145a
[junit] 1525995898.78 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995899.5: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525995900.20 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 7ceb58c6-9a17-4cf7-ac62-41169415e3c7
[junit] 1525995900.20 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995900.93: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995902.89 - CallbackServer: Subjob method: KBaseReport.create JobID: 67daffa1-9c3e-44b4-99cf-07ea4f3e2c15
[junit] 1525995902.95 - CallbackServer: Running module KBaseReport:
[junit] url: https://github.com/kbaseapps/KBaseReport
[junit] commit: 2cd253149595332c86667495032134ba64a7a96e
[junit] version: 2.3.1
[junit] release: release
[junit]
[junit] Creating KBase Report
[junit] Report Name report_f44aafae-d572-0504-d644-c23d4519b48a
[junit] 1525995905.07 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 7aa52198-8ddd-43d8-bec8-4c563433aa0a
[junit] 1525995905.07 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (fake)
[junit] 1525995905.74 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: ae11194d-d45a-45c8-a60f-8a82031b2b7c
[junit] 1525995905.74 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995906.48: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995906.58: Logging workspace error on get_objects: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] at java.lang.reflect.Method.invoke(Method.java:498)
[junit] at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] ... 36 more
[junit]
[junit] [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 27.051 sec
[junit] [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 27.051 sec
[junit] [junit] ------------- Standard Output ---------------
[junit] [junit] Got SDK_CALLBACK_URL http://172.17.0.1:45541
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=32654/1/1, workspaceName=test_TargetModuleForUnitTestingJava_1525995882345, minLength=10, additionalProperties={}]
[junit] [junit] Downloading assembly data as FASTA file.
[junit] [junit] Filtered assembly to 2 contigs out of 3
[junit] [junit] returning:
[junit] [junit] FilterContigsResults [reportName=report_f44aafae-d572-0504-d644-c23d4519b48a, reportRef=32654/2/1, assemblyOutput=32654/1/2, nInitialContigs=3, nContigsRemoved=1, nContigsRemaining=2, additionalProperties={}]
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=fake/fake/1, workspaceName=test_TargetModuleForUnitTestingJava_1525995882345, minLength=null, additionalProperties={}]
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=fake/fake/1, workspaceName=test_TargetModuleForUnitTestingJava_1525995882345, minLength=-10, additionalProperties={}]
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=fake, workspaceName=test_TargetModuleForUnitTestingJava_1525995882345, minLength=10, additionalProperties={}]
[junit] [junit] Downloading assembly data as FASTA file.
[junit] [junit] Test workspace was deleted
[junit] [junit] ------------- ---------------- ---------------
[junit] [junit]
[junit] [junit] Testcase: testFilterContigsOk took 22.737 sec
[junit] [junit] Testcase: test_filter_contigs_err1 took 0 sec
[junit] [junit] Testcase: test_filter_contigs_err2 took 0.001 sec
[junit] [junit] Testcase: test_filter_contigs_err3 took 3.3 sec
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 27 seconds
[junit] Shutting down callback server...
[junit] 1525995908.76 - CallbackServer: Shutting down executor service
[junit] Exit code: 0
[junit] Done! Your module is available in the a_SimpleModule_for_unit_testing_python directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd a_SimpleModule_for_unit_testing_python
[junit] make (required after making changes to a_SimpleModule_for_unit_testing_python.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/kbase.yml
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/Makefile
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/a_SimpleModule_for_unit_testing_python.spec -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/TargetModule_for_unit_testing_python.spec
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/deploy.cfg
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/scripts/run_async.sh
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/lib/a_SimpleModule_for_unit_testing_python/__init__.py -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/lib/TargetModule_for_unit_testing_python/__init__.py
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/lib/a_SimpleModule_for_unit_testing_python/a_SimpleModule_for_unit_testing_pythonImpl.py -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/lib/TargetModule_for_unit_testing_python/TargetModule_for_unit_testing_pythonImpl.py
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/ui/narrative/methods/filter_contigs/spec.json
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/test/a_SimpleModule_for_unit_testing_python_server_test.py
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/test_local/run_tests.sh
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/test_local/run_bash.sh
[junit]
[junit] Validating module in (/vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/a_SimpleModule_for_unit_testing_python/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] d714202af011
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.843MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> a49a0222013f
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:44:29 UTC 2018"
[junit] ---> Running in 22847d960ea1
[junit] From https://github.com/kbase/jars
[junit]  fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:44:29 UTC 2018
[junit] Removing intermediate container 22847d960ea1
[junit] ---> bd3b5e8b134f
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 0b80c923bddc
[junit] Removing intermediate container 0b80c923bddc
[junit] ---> 421727e94342
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in fa04d077baa3
[junit] Removing intermediate container fa04d077baa3
[junit] ---> 047bb0a91f86
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container f7e6566095f5
[junit] ---> f2514bbbde7d
[junit] Step 8/10 : RUN make all
[junit] ---> Running in 9699f60c5f63
[junit] kb-sdk compile TargetModule_for_unit_testing_python.spec \
[junit] --out lib \
[junit] --plclname TargetModule_for_unit_testing_python::TargetModule_for_unit_testing_pythonClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TargetModule_for_unit_testing_python.TargetModule_for_unit_testing_pythonClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname TargetModule_for_unit_testing_python.TargetModule_for_unit_testing_pythonServer \
[junit] --pyimplname TargetModule_for_unit_testing_python.TargetModule_for_unit_testing_pythonImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> scripts/start_server.sh
[junit] echo 'uwsgi --master --processes 5 --threads 5 --http :5000 --wsgi-file $script_dir/../lib/TargetModule_for_unit_testing_python/TargetModule_for_unit_testing_pythonServer.py' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_TargetModule_for_unit_testing_python_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_TargetModule_for_unit_testing_python_async_job.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> bin/run_TargetModule_for_unit_testing_python_async_job.sh
[junit] echo 'python -u $script_dir/../lib/TargetModule_for_unit_testing_python/TargetModule_for_unit_testing_pythonServer.py $1 $2 $3' >> bin/run_TargetModule_for_unit_testing_python_async_job.sh
[junit] chmod +x bin/run_TargetModule_for_unit_testing_python_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo 'python -m nose --with-coverage --cover-package=TargetModule_for_unit_testing_python --cover-html --cover-html-dir=/kb/module/work/test_coverage --nocapture --nologcapture .' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 9699f60c5f63
[junit] ---> 837360e9282e
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in a94ac0c72960
[junit] Removing intermediate container a94ac0c72960
[junit] ---> 5b62978239ad
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in 63940d4523ef
[junit] Removing intermediate container 63940d4523ef
[junit] ---> c4b95bb7f706
[junit] Successfully built c4b95bb7f706
[junit] Successfully tagged test/targetmodule_for_unit_testing_python:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:085bf1ac2c7ced63c55a85e0ef3a5af8168048a2ff516d4e90eaeceb76fb0aa8
[junit] Deleted: sha256:dff3f36075d62f8d1891860936333ea4df1813d27a21bb0282c34df866538a5b
[junit] Deleted: sha256:6eb316165008508b5d096a7e279936b97dee26fe3b70553b3f248708fe901c4a
[junit] Deleted: sha256:8aa9451576844c666b1c175ca9e1a93c1b0fc8c4044c0b9eb144ae36cf2ed768
[junit] Deleted: sha256:98deb81d12812f80fa4309e4d913217d833b54e89ce005261523d2af7ff13b37
[junit] Deleted: sha256:6a84232168fe9455eb98969d19177821fa66523dc4cf618aaa8710cbd92b9d05
[junit] Deleted: sha256:fe62d7db380bfabc277e66fee04f6358cf5585ea8bc2e215ef8a71351c09823e
[junit] Deleted: sha256:1349107bbe1d76ab71d9ce2f78e56edc14af9fc61b7902eefd91f4eb99dfb1a4
[junit] Deleted: sha256:fbab17f81d0e5b7992b6b7b8a38e3880696806e30fa015e02731e110862900b9
[junit] Deleted: sha256:a9d748b8aec55b99861073b2c2146abdbf4f3169bd31138beb199178754cea32
[junit] Deleted: sha256:4ebfca4d63ffda99e1b1f670e5d475e7c7eee8486167af06df02165d243a3654
[junit] Deleted: sha256:a737a8e9ad04e368eff7adbc6e1206d39d5c4aa22e9e9e6149192fa5cf46f454
[junit] Deleted: sha256:150a55b0dcc58e099ffcc814a98480e3fbfb05fd9737d940950606e9d0925986
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] 1525995918.57 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: a337bb8e-874b-4d34-8533-85c8a0b74805
[junit] 1525995918.71 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_TargetModule_for_unit_testing_python_1525995918528'}
[junit] validating parameters
[junit] staging input files
[junit] 1525995919.43 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 6e9b2d5a-b97e-46d9-9c24-fd7cab67de51
[junit] 1525995919.51 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995920.23: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] 1525995920.88 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: d7b9b749-69de-4d4a-837c-e8b02aee5bdd
[junit] 1525995920.88 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525995921.62: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995921.69: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525995921.92: uploading done into shock node: b03d7063-6fad-4ad8-a349-aab3ec33c54f
[junit] 1525995922.32 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: e639ed51-721e-4de5-bdcf-67f7820fde49
[junit] 1525995922.32 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995923.06: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525995923.73 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 8d23b9e1-68c3-4269-b433-7e063ba1de08
[junit] 1525995923.73 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995924.48: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995926.28 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 268fb15c-78e1-4908-9cae-0166dba1f0c8
[junit] 1525995926.28 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (32655/1/1)
[junit] 1525995927.03 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: 56ea48b4-b603-404f-965f-01be6a79753f
[junit] 1525995927.03 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995927.8: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995929.22 - CallbackServer: Subjob method: DataFileUtil.shock_to_file JobID: f99e665f-b54e-4293-ba8c-d6323577fb43
[junit] 1525995929.22 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995929.92: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995929.99: Fetching info for handle: KBH_252110
[junit] 1525995930.14: downloading shock node b03d7063-6fad-4ad8-a349-aab3ec33c54f into file: /kb/module/work/tmp/TestAssembly.fa
[junit] 1525995930.19: downloading done
[junit] 1525995931.36 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 7454f2b0-4f33-4d9e-a6e4-0294cfb55b39
[junit] 1525995931.36 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/filtered.fasta'},
[junit] u'workspace_name': u'test_TargetModule_for_unit_testing_python_1525995918528'}
[junit] validating parameters
[junit] staging input files
[junit] 1525995932.01 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 98b42606-770d-420a-bbd7-37124a255b7e
[junit] 1525995932.01 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995932.7: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/filtered.fasta
[junit] - parsed 2 contigs, 22bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/filtered.fasta) to SHOCK
[junit] 1525995933.45 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 9390253e-fb94-4814-850c-fa0c6133fd1c
[junit] 1525995933.45 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995934.17: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995934.26: uploading file /kb/module/work/tmp/filtered.fasta into shock node
[junit] 1525995934.53: uploading done into shock node: 1dfeb7ef-e5eb-46d2-aa44-8e975abbbc6e
[junit] 1525995934.88 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 79b3f459-e196-4bde-8341-31c598757283
[junit] 1525995934.88 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995935.57: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525995936.30 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 235d5e1f-3614-4147-ab53-619f0fc66490
[junit] 1525995936.30 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995937.05: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995938.97 - CallbackServer: Subjob method: KBaseReport.create JobID: c0f118d3-6c82-48ee-b77f-1634b7ded9ad
[junit] 1525995939.04 - CallbackServer: Running module KBaseReport:
[junit] url: https://github.com/kbaseapps/KBaseReport
[junit] commit: 2cd253149595332c86667495032134ba64a7a96e
[junit] version: 2.3.1
[junit] release: release
[junit]
[junit] Creating KBase Report
[junit] Report Name report_7f344bd1-e1a0-7df3-ca20-120306c1f80a
[junit] Starting Filter Contigs function. Params=
[junit] {'assembly_input_ref': '1/fake/3',
[junit] 'min_length': '-10',
[junit] 'workspace_name': 'test_TargetModule_for_unit_testing_python_1525995918528'}
[junit] Validating parameters.
[junit] Starting Filter Contigs function. Params=
[junit] {'assembly_input_ref': '1/fake/3',
[junit] 'min_length': 'ten',
[junit] 'workspace_name': 'test_TargetModule_for_unit_testing_python_1525995918528'}
[junit] Validating parameters.
[junit] Starting Filter Contigs function. Params=
[junit] {'assembly_input_ref': u'32655/1/1',
[junit] 'min_length': 10,
[junit] 'workspace_name': 'test_TargetModule_for_unit_testing_python_1525995918528'}
[junit] Validating parameters.
[junit] Downloading Assembly data as a Fasta file.
[junit] Filtered Assembly to 2 contigs out of 3
[junit] Uploading filtered Assembly data.
[junit] returning:{'assembly_output': u'32655/1/2',
[junit] 'n_contigs_remaining': 2,
[junit] 'n_contigs_removed': 1,
[junit] 'n_initial_contigs': 3,
[junit] 'report_name': u'report_7f344bd1-e1a0-7df3-ca20-120306c1f80a',
[junit] 'report_ref': u'32655/2/1'}
[junit] Test workspace was deleted
[junit] Shutting down callback server...
[junit] 1525995940.92 - CallbackServer: Shutting down executor service
[junit] Exit code: 0
[junit] Done! Your module is available in the a_SimpleModule_for_unit_testing_perl directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd a_SimpleModule_for_unit_testing_perl
[junit] make (required after making changes to a_SimpleModule_for_unit_testing_perl.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/kbase.yml
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/Makefile
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/a_SimpleModule_for_unit_testing_perl.spec -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/TargetModule_for_unit_testing_perl.spec
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/deploy.cfg
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/scripts/run_async.sh
[junit] Moving /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/lib/a_SimpleModule_for_unit_testing_perl/a_SimpleModule_for_unit_testing_perlImpl.pm -> /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/lib/TargetModule_for_unit_testing_perl/TargetModule_for_unit_testing_perlImpl.pm
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/ui/narrative/methods/filter_contigs/spec.json
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/test/a_SimpleModule_for_unit_testing_perl_server_test.pl
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/test_local/run_tests.sh
[junit] Changing /vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/test_local/run_bash.sh
[junit]
[junit] Validating module in (/vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/a_SimpleModule_for_unit_testing_perl/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] 313ac5c09b5f
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.848MB
[junit]
[junit] Step 1/12 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/12 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/12 : RUN cpanm -i Config::IniFiles
[junit] ---> Using cache
[junit] ---> d230f667e5eb
[junit] Step 4/12 : RUN cpanm -i Bio::SeqIO
[junit] ---> Using cache
[junit] ---> f6bffe0089b2
[junit] Step 5/12 : COPY ./ /kb/module
[junit] ---> 4cd0a1721982
[junit] Step 6/12 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:44:29 UTC 2018"
[junit] ---> Running in 8359683f9f1a
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:44:29 UTC 2018
[junit] Removing intermediate container 8359683f9f1a
[junit] ---> 2bfca9cfa727
[junit] Step 7/12 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 8641fb42ad52
[junit] Removing intermediate container 8641fb42ad52
[junit] ---> d99e3744e479
[junit] Step 8/12 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 3dd3fe48b1e4
[junit] Removing intermediate container 3dd3fe48b1e4
[junit] ---> a3dfddb248b4
[junit] Step 9/12 : WORKDIR /kb/module
[junit] Removing intermediate container 7d0fcaf65010
[junit] ---> 07c253d429dd
[junit] Step 10/12 : RUN make all
[junit] ---> Running in d55c507f6ee8
[junit] kb-sdk compile TargetModule_for_unit_testing_perl.spec \
[junit] --out lib \
[junit] --plclname TargetModule_for_unit_testing_perl::TargetModule_for_unit_testing_perlClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname TargetModule_for_unit_testing_perl.TargetModule_for_unit_testing_perlClient \
[junit] --javasrc src \
[junit] --java \
[junit] --plsrvname TargetModule_for_unit_testing_perl::TargetModule_for_unit_testing_perlServer \
[junit] --plimplname TargetModule_for_unit_testing_perl::TargetModule_for_unit_testing_perlImpl \
[junit] --plpsginame TargetModule_for_unit_testing_perl.psgi;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> scripts/start_server.sh
[junit] echo 'plackup $script_dir/../lib/TargetModule_for_unit_testing_perl.psgi' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_TargetModule_for_unit_testing_perl_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_TargetModule_for_unit_testing_perl_async_job.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> bin/run_TargetModule_for_unit_testing_perl_async_job.sh
[junit] echo 'perl $script_dir/../lib/TargetModule_for_unit_testing_perl/TargetModule_for_unit_testing_perlServer.pm $1 $2 $3' >> bin/run_TargetModule_for_unit_testing_perl_async_job.sh
[junit] chmod +x bin/run_TargetModule_for_unit_testing_perl_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo "perl -e 'opendir my \$dh, \".\"; my @l = grep { /\\\\.pl\$/ } readdir \$dh; my \$ret=0; foreach my \$s (@l) { print(\"Running \".\$s.\"\\\\n\"); system(\"perl\", \$s) && do{\$ret=2; next;}; } exit(\$ret);'" >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container d55c507f6ee8
[junit] ---> 0009189a3967
[junit] Step 11/12 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in f39d7b0e5e25
[junit] Removing intermediate container f39d7b0e5e25
[junit] ---> 2814b60b3907
[junit] Step 12/12 : CMD [ ]
[junit] ---> Running in 59bbe9c26bdd
[junit] Removing intermediate container 59bbe9c26bdd
[junit] ---> 55aa0915f3dc
[junit] Successfully built 55aa0915f3dc
[junit] Successfully tagged test/targetmodule_for_unit_testing_perl:latest
[junit] Delete old Docker image
[junit] Deleted: sha256:9384ecb33ac146429119f068b6430df7ccbaf7530905b2453ddba454041b1a0c
[junit] Deleted: sha256:7e0984e92ac52e2f84b8069d0601e88f60e32c814bf1fff22c67ef1c19cbeee9
[junit] Deleted: sha256:489bbdbb4cc7fd31a2a72abce177b45a9acea742095cd4d427c4c7f03372cb93
[junit] Deleted: sha256:77559177a799f8d529677b7a06c255cfc6dbc92aac54aa6178613121e4213a52
[junit] Deleted: sha256:e58a8b050b3793cd37b46c6153970e3f09331c156a7ef059823c0f157b177577
[junit] Deleted: sha256:de0bffe779b12275f11b1ba7e93e9ce6f768d59925cbd746662920d3e55ba697
[junit] Deleted: sha256:15032c0beb3225dffab7b857af97403f5bee5d7a90c7809f4a0aa042de6c7190
[junit] Deleted: sha256:0d77cff03a83dbef20902a19d84d1ab668462a78d7c09131c0d3840a4d098185
[junit] Deleted: sha256:6500384a67d4bfa336dc4c4827b51f53fc1076e6d20c7bce3d130ffe2b655366
[junit] Deleted: sha256:c7de31129f16686fafc78f5305076b41f3f447a5b9af258d36aeb771f0048fc4
[junit] Deleted: sha256:bfd4d6d337bd7f3c451ba2fd04690482af57bcef5d21cdaea0a70ca086205ad0
[junit] Deleted: sha256:2401aa25f55a6b90c17c4e079a0c21d40a19849848b93f82e53c690c151401a1
[junit] Deleted: sha256:2e03ad62fc629cf894683475faae0ec899533aac3d8fb60f12962176139db6da
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] Running a_SimpleModule_for_unit_testing_perl_server_test.pl
[junit] 1525995950.08 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 62e85501-5284-4584-8b1b-9b6139a5b5ec
[junit] 1525995950.20 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_TargetModule_for_unit_testing_perl_1525995950006'}
[junit] validating parameters
[junit] staging input files
[junit] 1525995950.90 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 660048c7-220d-4fe5-88b1-2494203c9605
[junit] 1525995950.97 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995951.7: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525995952.33 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: e4e2f551-eb99-4736-9109-9617c414b15c
[junit] 1525995952.33 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995953.1: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995953.18: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525995953.44: uploading done into shock node: 36cea578-2d00-4c0e-9f01-d583bc2e1361
[junit] 1525995953.77 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 9d8ebf7a-576c-4c70-9f02-ce9394388297
[junit] 1525995953.77 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995954.48: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995955.19 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 53d85ab1-af3f-444c-b175-a838e6b75e00
[junit] 1525995955.19 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] Saving Assembly to Workspace
[junit] 1525995955.85: Shock url: https://ci.kbase.us/services/shock-api
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'assembly_input_ref' => '32656/1/1',
[junit] 'workspace_name' => 'test_TargetModule_for_unit_testing_perl_1525995950006',
[junit] 'min_length' => 10
[junit] };
[junit]
[junit] Downloading assembly data as FASTA file.
[junit] 1525995957.76 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 3de7f042-7abb-4c76-ac64-bf9d1fc988c9
[junit] 1525995957.76 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (32656/1/1)
[junit] 1525995958.51 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: c906dd30-5069-487a-b20e-d4b225795b2a
[junit] 1525995958.51 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995959.21: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995959.94 - CallbackServer: Subjob method: DataFileUtil.shock_to_file JobID: 0294f252-84a8-4df4-93ae-587e47d29948
[junit] 1525995959.94 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995960.7: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995960.77: Fetching info for handle: KBH_252112
[junit] 1525995960.84: downloading shock node 36cea578-2d00-4c0e-9f01-d583bc2e1361 into file: /kb/module/work/tmp/TestAssembly.fa
[junit] 1525995960.91: downloading done
[junit] Filtered assembly to 2 contigs out of 3
[junit] 1525995962.86 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 2c573b19-7ed6-490d-90ff-2b5797f3e19a
[junit] 1525995962.86 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/filtered.fasta'},
[junit] u'workspace_name': u'test_TargetModule_for_unit_testing_perl_1525995950006'}
[junit] validating parameters
[junit] staging input files
[junit] 1525995963.53 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 4fe3aff3-dbe5-40ab-bcc3-a4039a46d161
[junit] 1525995963.53 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995964.26: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/filtered.fasta
[junit] - parsed 2 contigs, 22bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/filtered.fasta) to SHOCK
[junit] 1525995964.98 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 2cab0a57-c262-4cba-9426-646d0539f6f2
[junit] 1525995964.98 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995965.72: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995965.8: uploading file /kb/module/work/tmp/filtered.fasta into shock node
[junit] 1525995966.09: uploading done into shock node: eb745cda-8b81-4ef5-a413-c85c21b83baa
[junit] 1525995966.39 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 18f0746d-9e5e-4e6a-9ea9-17b2b3132797
[junit] 1525995966.39 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995967.15: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525995967.82 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 34089c01-c84b-4221-b04c-cbd9cc5ad7ce
[junit] 1525995967.82 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995968.56: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995970.48 - CallbackServer: Subjob method: KBaseReport.create JobID: f57b005b-f844-4543-a908-7286681dd001
[junit] 1525995970.54 - CallbackServer: Running module KBaseReport:
[junit] url: https://github.com/kbaseapps/KBaseReport
[junit] commit: 2cd253149595332c86667495032134ba64a7a96e
[junit] version: 2.3.1
[junit] release: release
[junit]
[junit] Creating KBase Report
[junit] Report Name report_7593fcf7-23ef-4b01-7793-9ed21aa516bd
[junit] returning: $VAR1 = {
[junit] 'n_contigs_removed' => 1,
[junit] 'report_ref' => '32656/2/1',
[junit] 'report_name' => 'report_7593fcf7-23ef-4b01-7793-9ed21aa516bd',
[junit] 'n_contigs_remaining' => 2,
[junit] 'assembly_output' => '32656/1/2',
[junit] 'n_initial_contigs' => 3
[junit] };
[junit]
[junit] ok 1 - number of initial contigs
[junit] ok 2 - number of removed contigs
[junit] ok 3 - number of remaining contigs
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'workspace_name' => 'test_TargetModule_for_unit_testing_perl_1525995950006',
[junit] 'assembly_input_ref' => 'fake',
[junit] 'min_length' => 10
[junit] };
[junit]
[junit] Downloading assembly data as FASTA file.
[junit] 1525995971.90 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 130ef202-caf2-485b-a398-fc3ed0077279
[junit] 1525995971.90 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (fake)
[junit] 1525995972.56 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: 975fe3cd-c69c-4bf6-a454-4cc0635f063f
[junit] 1525995972.56 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525995973.27: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525995973.37: Logging workspace error on get_objects: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] at java.lang.reflect.Method.invoke(Method.java:498)
[junit] at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] ... 36 more
[junit]
[junit] ok 4
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'workspace_name' => 'test_TargetModule_for_unit_testing_perl_1525995950006',
[junit] 'assembly_input_ref' => 'fake',
[junit] 'min_length' => -10
[junit] };
[junit]
[junit] ok 5
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'workspace_name' => 'test_TargetModule_for_unit_testing_perl_1525995950006',
[junit] 'assembly_input_ref' => 'fake'
[junit] };
[junit]
[junit] ok 6
[junit] 1..6
[junit] Test workspace was deleted
[junit] Shutting down callback server...
[junit] 1525995975.56 - CallbackServer: Shutting down executor service
[junit] Exit code: 0
[junit] ------------- ---------------- ---------------
[junit] ------------- Standard Error -----------------
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/bin/../lib/KBaseReport/KBaseReportServer.pm line 274.
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: "DataFileUtil.get_objects" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: Traceback (most recent call last):
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: result = method(ctx, *params)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: [params], self._service_ver, context)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: return self._call(url, service_method, args, context)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: raise ServerError(**err['error'])
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525995906.85 - CallbackServer[ae11194d-d45a-45c8-a60f-8a82031b2b7c]: ... 36 more
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: "AssemblyUtil.get_assembly_as_fasta" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: Traceback (most recent call last):
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/bin/../lib/AssemblyUtil/AssemblyUtilServer.py", line 95, in _call_method
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: result = method(ctx, *params)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/AssemblyUtil/AssemblyUtilImpl.py", line 62, in get_assembly_as_fasta
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: file = atf.assembly_as_fasta(ctx, params)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/AssemblyUtil/AssemblyToFasta.py", line 48, in assembly_as_fasta
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: assembly_object = self.dfu.get_objects({'object_refs': [params['ref']]})['data'][0]
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 607, in get_objects
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: job_state = self._check_job(job_id)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 44, in _check_job
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: return self._client._check_job('DataFileUtil', job_id)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 216, in _check_job
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: return self._call(self.url, service + '._check_job', [job_id])
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 183, in _call
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: raise ServerError(**err['error'])
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: ServerError: Server error: -32000. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: Traceback (most recent call last):
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: result = method(ctx, *params)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: [params], self._service_ver, context)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: return self._call(url, service_method, args, context)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: raise ServerError(**err['error'])
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525995907.40 - CallbackServer[7aa52198-8ddd-43d8-bec8-4c563433aa0a]: ... 36 more
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/bin/../lib/KBaseReport/KBaseReportServer.pm line 274.
[junit] ...
[junit] Name Stmts Miss Cover
[junit] -----------------------------------------------------------------------------------------------------------------------
[junit] /kb/module/lib/TargetModule_for_unit_testing_python/TargetModule_for_unit_testing_pythonClient.py 15 15 0%
[junit] /kb/module/lib/TargetModule_for_unit_testing_python/TargetModule_for_unit_testing_pythonImpl.py 60 6 90%
[junit] /kb/module/lib/TargetModule_for_unit_testing_python/TargetModule_for_unit_testing_pythonServer.py 369 275 25%
[junit] /kb/module/lib/TargetModule_for_unit_testing_python/__init__.py 0 0 100%
[junit] /kb/module/lib/TargetModule_for_unit_testing_python/authclient.py 58 18 69%
[junit] /kb/module/lib/TargetModule_for_unit_testing_python/baseclient.py 147 147 0%
[junit] -----------------------------------------------------------------------------------------------------------------------
[junit] TOTAL 649 461 29%
[junit] ----------------------------------------------------------------------
[junit] Ran 3 tests in 22.213s
[junit]
[junit] OK
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/bin/../lib/KBaseReport/KBaseReportServer.pm line 274.
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: "DataFileUtil.get_objects" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: Traceback (most recent call last):
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: result = method(ctx, *params)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: [params], self._service_ver, context)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: return self._call(url, service_method, args, context)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: raise ServerError(**err['error'])
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525995973.64 - CallbackServer[975fe3cd-c69c-4bf6-a454-4cc0635f063f]: ... 36 more
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: "AssemblyUtil.get_assembly_as_fasta" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: Traceback (most recent call last):
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/bin/../lib/AssemblyUtil/AssemblyUtilServer.py", line 95, in _call_method
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: result = method(ctx, *params)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/AssemblyUtil/AssemblyUtilImpl.py", line 62, in get_assembly_as_fasta
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: file = atf.assembly_as_fasta(ctx, params)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/AssemblyUtil/AssemblyToFasta.py", line 48, in assembly_as_fasta
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: assembly_object = self.dfu.get_objects({'object_refs': [params['ref']]})['data'][0]
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 607, in get_objects
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: job_state = self._check_job(job_id)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 44, in _check_job
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: return self._client._check_job('DataFileUtil', job_id)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 216, in _check_job
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: return self._call(self.url, service + '._check_job', [job_id])
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 183, in _call
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: raise ServerError(**err['error'])
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: ServerError: Server error: -32000. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: Traceback (most recent call last):
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: result = method(ctx, *params)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: [params], self._service_ver, context)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: return self._call(url, service_method, args, context)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: raise ServerError(**err['error'])
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525995974.20 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525995974.21 - CallbackServer[130ef202-caf2-485b-a398-fc3ed0077279]: ... 36 more
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testJava took 41.753 sec
[junit] Testcase: testPython took 32.142 sec
[junit] Testcase: testPerl took 34.642 sec
[junit] Testcase: testWindowsEOFs took 0.001 sec
[junit] Running us.kbase.mobu.tester.test.CallbackServerTest
[junit] Testsuite: us.kbase.mobu.tester.test.CallbackServerTest
[junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 72.242 sec
[junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 72.242 sec
[junit] ------------- Standard Output ---------------
[junit] Running maxJobs in dir temp_test_callback/cbt6081937779271756236
[junit] Docker logger stdout: 1525995981.11 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: d05c5260-e101-4094-b44b-e732957734a3
[junit] Docker logger stdout: 1525995981.26 - CallbackServer: Running module njs_sdk_test_1:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995981.83 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995981.88 njs_sdk_test_1 ID: outer: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'outer',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-0',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-0',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-1',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-1',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-2',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-2',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-3',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-3',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'singlejob', u'wait': 2}],
[junit] u'ver': u'dev'}],
[junit] u'run_jobs_async': True,
[junit] u'wait': 1}
[junit] 1525995981.88 njs_sdk_test_1 ID: outer: Running jobs asynchronously
[junit] 1525995981.88 njs_sdk_test_1 ID: outer: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] 1525995981.89 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] 1525995981.89 njs_sdk_test_1 ID: outer: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] 1525995981.89 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] Docker logger stdout: 1525995981.90 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 3f4f105d-051f-40b9-8f15-0a2568d059ba
[junit] Docker logger stdout: 1525995981.90 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995981.9 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] Docker logger stdout: 1525995981.90 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: cd7704f0-688c-4d55-9985-8ca315019ccf
[junit] Docker logger stdout: 1525995981.90 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 10e2c9d7-4b4a-42ed-b8f2-d7c8bc2ab402
[junit] Docker logger stdout: 1525995981.90 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: a0915ad8-f726-4d2e-8e66-a72b9a33e687
[junit] Docker logger stdout: 1525995981.91 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: d0e4ace7-f6e4-4116-b144-7281f1236e6a
[junit] Docker logger stdout: 1525995981.95 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id 3f4f105d-051f-40b9-8f15-0a2568d059ba
[junit] Docker logger stdout: 1525995982.01 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525995982.06 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525995982.12 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id 10e2c9d7-4b4a-42ed-b8f2-d7c8bc2ab402
[junit] 1525995982.95 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995983.03 njs_sdk_test_1 ID: singlejob: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'singlejob', u'wait': 2}
[junit] 1525995983.03 njs_sdk_test_1 ID: singlejob: waiting for 2 sec
[junit] 1525995983.08 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995983.1 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995983.15 njs_sdk_test_1 ID: inner-1: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-1',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-1', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995983.15 njs_sdk_test_1 ID: inner-1: Running jobs synchronously
[junit] 1525995983.15 njs_sdk_test_1 ID: inner-1: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-1', u'wait': 3}]
[junit] Docker logger stdout: 1525995983.16 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: d790b9a3-05f9-4ae6-8405-198c6ecb1c0b
[junit] Docker logger stdout: 1525995983.17 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995983.18 njs_sdk_test_1 ID: inner-0: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-0',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-0', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995983.18 njs_sdk_test_1 ID: inner-0: Running jobs synchronously
[junit] 1525995983.18 njs_sdk_test_1 ID: inner-0: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-0', u'wait': 3}]
[junit] Docker logger stdout: 1525995983.18 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 4fb4691e-9f5a-4e3f-80fa-c0c11c414557
[junit] 1525995983.24 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] Docker logger stdout: 1525995983.26 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995983.27 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995983.29 njs_sdk_test_1 ID: inner-3: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-3',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-3', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995983.29 njs_sdk_test_1 ID: inner-3: Running jobs synchronously
[junit] 1525995983.29 njs_sdk_test_1 ID: inner-3: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-3', u'wait': 3}]
[junit] Docker logger stdout: 1525995983.29 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: b458c8bd-f987-4da7-adc3-029f0c150e41
[junit] 1525995983.31 njs_sdk_test_1 ID: inner-2: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-2',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-2', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995983.31 njs_sdk_test_1 ID: inner-2: Running jobs synchronously
[junit] 1525995983.31 njs_sdk_test_1 ID: inner-2: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-2', u'wait': 3}]
[junit] Docker logger stdout: 1525995983.31 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 93e0dd2e-05d0-460f-9c66-efe71d8ac7d9
[junit] Docker logger stdout: 1525995983.32 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id 4fb4691e-9f5a-4e3f-80fa-c0c11c414557
[junit] Docker logger stdout: 1525995983.38 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id 93e0dd2e-05d0-460f-9c66-efe71d8ac7d9
[junit] 1525995984.26 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995984.31 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995984.33 njs_sdk_test_1 ID: inner2-1: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-1', u'wait': 3}
[junit] 1525995984.33 njs_sdk_test_1 ID: inner2-1: waiting for 3 sec
[junit] 1525995984.37 njs_sdk_test_1 ID: inner2-0: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-0', u'wait': 3}
[junit] 1525995984.37 njs_sdk_test_1 ID: inner2-0: waiting for 3 sec
[junit] 1525995984.39 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995984.43 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995984.43 njs_sdk_test_1 ID: inner2-3: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-3', u'wait': 3}
[junit] 1525995984.43 njs_sdk_test_1 ID: inner2-3: waiting for 3 sec
[junit] 1525995984.48 njs_sdk_test_1 ID: inner2-2: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-2', u'wait': 3}
[junit] 1525995984.48 njs_sdk_test_1 ID: inner2-2: waiting for 3 sec
[junit] 1525995985.29 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'singlejob',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525995986.97 Generic client checking job state
[junit] 1525995987.18 Generic client checking job state
[junit] 1525995987.69 njs_sdk_test_1 ID: inner-1: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525995987.69 njs_sdk_test_1 ID: inner-1: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525995987.69 njs_sdk_test_1 ID: inner-1: waiting for 2 sec
[junit] 1525995987.75 njs_sdk_test_1 ID: inner-3: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525995987.75 njs_sdk_test_1 ID: inner-3: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525995987.75 njs_sdk_test_1 ID: inner-3: waiting for 2 sec
[junit] 1525995988.33 Generic client checking job state
[junit] 1525995988.36 njs_sdk_test_1 ID: inner-0: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525995988.36 njs_sdk_test_1 ID: inner-0: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525995988.36 njs_sdk_test_1 ID: inner-0: waiting for 2 sec
[junit] 1525995988.4 Generic client checking job state
[junit] 1525995988.42 njs_sdk_test_1 ID: inner-2: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525995988.42 njs_sdk_test_1 ID: inner-2: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525995988.42 njs_sdk_test_1 ID: inner-2: waiting for 2 sec
[junit] 1525995989.9 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-1',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525995989.99 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-3',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525995991.98 Generic client checking job state
[junit] 1525995991.99 njs_sdk_test_1 ID: outer: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-0',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525995992.19 Generic client checking job state
[junit] 1525995992.23 njs_sdk_test_1 ID: outer: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-2',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525995992.31 njs_sdk_test_1 ID: outer: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-0',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-1',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-2',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-3',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'singlejob',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]]
[junit] 1525995992.31 njs_sdk_test_1 ID: outer: waiting for 1 sec
[junit] Docker logger stdout: 1525995993.60 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 232f60b4-25de-41d1-8315-80f7d7da6ce7
[junit] Docker logger stdout: 1525995993.60 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995994.18 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995994.22 njs_sdk_test_1 ID: errjob: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'except': u'planned exception', u'id': u'errjob'}
[junit] Docker logger stderr: 1525995994.48 - CallbackServer[232f60b4-25de-41d1-8315-80f7d7da6ce7]: "njs_sdk_test_1.run" job threw an error, name="Server error", code=-32000, message="planned exception errjob", data:
[junit] Docker logger stderr: 1525995994.48 - CallbackServer[232f60b4-25de-41d1-8315-80f7d7da6ce7]: Traceback (most recent call last):
[junit] Docker logger stderr: 1525995994.48 - CallbackServer[232f60b4-25de-41d1-8315-80f7d7da6ce7]: File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] Docker logger stderr: 1525995994.48 - CallbackServer[232f60b4-25de-41d1-8315-80f7d7da6ce7]: result = method(ctx, *params)
[junit] Docker logger stderr: 1525995994.48 - CallbackServer[232f60b4-25de-41d1-8315-80f7d7da6ce7]: File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 144, in run
[junit] Docker logger stderr: 1525995994.48 - CallbackServer[232f60b4-25de-41d1-8315-80f7d7da6ce7]: raise ValueError(params.get('except') + ' ' + self.id_)
[junit] Docker logger stderr: 1525995994.48 - CallbackServer[232f60b4-25de-41d1-8315-80f7d7da6ce7]: ValueError: planned exception errjob
[junit] got traceback from server in test:
[junit] Traceback (most recent call last):
[junit] File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] result = method(ctx, *params)
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 144, in run
[junit] raise ValueError(params.get('except') + ' ' + self.id_)
[junit] ValueError: planned exception errjob
[junit]
[junit] Docker logger stdout: 1525995994.49 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 5d656497-aa95-47c8-a315-7bd49dd4f75c
[junit] Docker logger stdout: 1525995994.49 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995995.04 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995995.09 njs_sdk_test_1 ID: outer: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'outer',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-0',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-0',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-1',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-1',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-2',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-2',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-3',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-3',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'singlejob', u'wait': 2}],
[junit] u'ver': u'dev'}],
[junit] u'run_jobs_async': True,
[junit] u'wait': 1}
[junit] 1525995995.09 njs_sdk_test_1 ID: outer: Running jobs asynchronously
[junit] 1525995995.09 njs_sdk_test_1 ID: outer: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]1525995995.09 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] Docker logger stdout: 1525995995.09 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 5d8f2a79-1321-4d7f-9f86-45fdad4e37cf
[junit] Docker logger stdout: 1525995995.09 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525995995.09 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 7eb8983c-9cf6-4115-b740-1d4123da6aba
[junit] 1525995995.09 njs_sdk_test_1 ID: outer: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] 1525995995.09 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit] 1525995995.09 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob', u'wait': 2}]
[junit]
[junit] Docker logger stdout: 1525995995.10 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 95dc7611-7bc8-45aa-8110-d9ed730b1b85
[junit] Docker logger stdout: 1525995995.10 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 70c9e046-a3b9-41d4-a9b9-64c03cf2e31e
[junit] Docker logger stdout: 1525995995.10 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: ec35666f-1fb5-430d-ac2a-1d4245cbdc3e
[junit] Docker logger stdout: 1525995995.14 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525995995.19 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id ec35666f-1fb5-430d-ac2a-1d4245cbdc3e
[junit] Docker logger stdout: 1525995995.26 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525995995.36 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id 7eb8983c-9cf6-4115-b740-1d4123da6aba
[junit] 1525995995.9 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] Docker logger stdout: 1525995995.96 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: e6a5f0ca-fabe-419e-96c6-2c8a945165ef
[junit] Docker logger stdout: 1525995995.96 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995995.96 njs_sdk_test_1 ID: inner-1: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-1',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-1', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995995.96 njs_sdk_test_1 ID: inner-1: Running jobs synchronously
[junit] 1525995995.96 njs_sdk_test_1 ID: inner-1: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-1', u'wait': 3}]
[junit] 1525995996.52 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995996.52 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995996.56 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995996.6 njs_sdk_test_1 ID: inner-0: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-0',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-0', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995996.61 njs_sdk_test_1 ID: singlejob: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'singlejob', u'wait': 2}
[junit] 1525995996.61 njs_sdk_test_1 ID: singlejob: waiting for 2 sec
[junit] 1525995996.61 njs_sdk_test_1 ID: inner-0: Running jobs synchronously
[junit] 1525995996.61 njs_sdk_test_1 ID: inner-0: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-0', u'wait': 3}]
[junit] Docker logger stdout: 1525995996.61 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: f7787a4d-bb35-43fe-baa2-956dc5530d4a
[junit] Docker logger stdout: 1525995996.61 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525995996.65 njs_sdk_test_1 ID: inner-2: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-2',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-2', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995996.65 njs_sdk_test_1 ID: inner-2: Running jobs synchronously
[junit] 1525995996.65 njs_sdk_test_1 ID: inner-2: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-2', u'wait': 3}]
[junit] Docker logger stdout: 1525995996.66 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: dfd563dc-1d82-4fdd-9221-ff2d0bfce541
[junit] Docker logger stdout: 1525995996.68 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id f7787a4d-bb35-43fe-baa2-956dc5530d4a
[junit] 1525995996.72 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995996.78 njs_sdk_test_1 ID: inner-3: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-3',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-3', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525995996.78 njs_sdk_test_1 ID: inner-3: Running jobs synchronously
[junit] 1525995996.78 njs_sdk_test_1 ID: inner-3: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-3', u'wait': 3}]
[junit] Docker logger stdout: 1525995996.79 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 17cedaf3-b6a6-4357-b503-2e22da11456e
[junit] Docker logger stdout: 1525995996.79 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id dfd563dc-1d82-4fdd-9221-ff2d0bfce541
[junit] 1525995996.83 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995996.87 njs_sdk_test_1 ID: inner2-1: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-1', u'wait': 3}
[junit] 1525995996.87 njs_sdk_test_1 ID: inner2-1: waiting for 3 sec
[junit] 1525995997.53 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995997.58 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995997.59 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525995997.6 njs_sdk_test_1 ID: inner2-0: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-0', u'wait': 3}
[junit] 1525995997.6 njs_sdk_test_1 ID: inner2-0: waiting for 3 sec
[junit] 1525995997.64 njs_sdk_test_1 ID: inner2-3: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-3', u'wait': 3}
[junit] 1525995997.64 njs_sdk_test_1 ID: inner2-3: waiting for 3 sec
[junit] 1525995997.65 njs_sdk_test_1 ID: inner2-2: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-2', u'wait': 3}
[junit] 1525995997.65 njs_sdk_test_1 ID: inner2-2: waiting for 3 sec
[junit] 1525995998.86 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'singlejob',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996000.11 njs_sdk_test_1 ID: inner-1: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996000.11 njs_sdk_test_1 ID: inner-1: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525996000.11 njs_sdk_test_1 ID: inner-1: waiting for 2 sec
[junit] 1525996000.2 Generic client checking job state
[junit] 1525996000.43 Generic client checking job state
[junit] 1525996000.99 njs_sdk_test_1 ID: inner-3: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996000.99 njs_sdk_test_1 ID: inner-3: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525996000.99 njs_sdk_test_1 ID: inner-3: waiting for 2 sec
[junit] 1525996001.69 Generic client checking job state
[junit] 1525996001.7 njs_sdk_test_1 ID: inner-0: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996001.7 njs_sdk_test_1 ID: inner-0: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525996001.7 njs_sdk_test_1 ID: inner-0: waiting for 2 sec
[junit] 1525996001.81 Generic client checking job state
[junit] 1525996001.84 njs_sdk_test_1 ID: inner-2: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996001.84 njs_sdk_test_1 ID: inner-2: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525996001.84 njs_sdk_test_1 ID: inner-2: waiting for 2 sec
[junit] 1525996002.43 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-1',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996003.25 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-3',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996005.23 Generic client checking job state
[junit] 1525996005.24 njs_sdk_test_1 ID: outer: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-0',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996005.44 Generic client checking job state
[junit] 1525996005.46 njs_sdk_test_1 ID: outer: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-2',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996005.47 njs_sdk_test_1 ID: outer: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-0',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-1',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-2',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-3',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'singlejob',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]]
[junit] 1525996005.47 njs_sdk_test_1 ID: outer: waiting for 1 sec
[junit] Docker logger stdout: 1525996006.71 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: cd1d3895-cac7-4402-9b46-4b0cf542e0e2
[junit] Docker logger stdout: 1525996006.71 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525996007.34 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996007.39 njs_sdk_test_1 ID: outer: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'outer',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-0',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-0',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-1',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-1',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-2',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-2',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner-3',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-3',
[junit] u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'singlejob', u'wait': 2}],
[junit] u'ver': u'dev'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'singlejob2', u'wait': 2}],
[junit] u'ver': u'dev'}],
[junit] u'run_jobs_async': True,
[junit] u'wait': 1}
[junit] 1525996007.39 njs_sdk_test_1 ID: outer: Running jobs asynchronously
[junit] 1525996007.39 njs_sdk_test_1 ID: outer: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob2', u'wait': 2}]
[junit] 1525996007.39 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob2', u'wait': 2}]
[junit] Docker logger stdout: 1525996007.39 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: ffa91844-5433-428c-b361-60c68c79afd7
[junit] Docker logger stdout: 1525996007.39 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525996007.40 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 01159b6e-c62d-4c47-b68b-8e7734ef3934
[junit] 1525996007.39 njs_sdk_test_1 ID: outer: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob2', u'wait': 2}]
[junit] 1525996007.39 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob2', u'wait': 2}]
[junit] 1525996007.4 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob2', u'wait': 2}]
[junit] Docker logger stdout: 1525996007.40 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 21c091e9-b859-4bbb-a220-f8d1a0d71596
[junit] 1525996007.4 njs_sdk_test_1 ID: outer: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'singlejob2', u'wait': 2}]
[junit] Docker logger stdout: 1525996007.40 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: b2c01afb-2e04-4838-86ee-97db88c64f00
[junit] Docker logger stdout: 1525996007.40 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: c568c911-73e1-426c-a43b-d99f8c9df6d2
[junit] Docker logger stdout: 1525996007.40 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 3e630a1e-b403-44df-8b29-1600c594b7a3
[junit] Docker logger stdout: 1525996007.47 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525996007.52 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525996007.58 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id c568c911-73e1-426c-a43b-d99f8c9df6d2
[junit] Docker logger stdout: 1525996007.67 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] Docker logger stdout: 1525996007.76 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id 01159b6e-c62d-4c47-b68b-8e7734ef3934
[junit] 1525996008.25 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996008.31 njs_sdk_test_1 ID: inner-1: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-1',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-1', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525996008.31 njs_sdk_test_1 ID: inner-1: Running jobs synchronously
[junit] 1525996008.31 njs_sdk_test_1 ID: inner-1: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-1', u'wait': 3}]
[junit] Docker logger stdout: 1525996008.31 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: a46ce33f-961c-4fdd-af88-f301e6c65ac4
[junit] Docker logger stdout: 1525996008.31 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525996008.82 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996008.88 njs_sdk_test_1 ID: singlejob: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'singlejob', u'wait': 2}
[junit] 1525996008.88 njs_sdk_test_1 ID: singlejob: waiting for 2 sec
[junit] 1525996009.1 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996009.15 njs_sdk_test_1 ID: singlejob2: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'singlejob2', u'wait': 2}
[junit] 1525996009.15 njs_sdk_test_1 ID: singlejob2: waiting for 2 sec
[junit] 1525996009.17 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996009.24 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996009.25 njs_sdk_test_1 ID: inner-0: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-0',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-0', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525996009.25 njs_sdk_test_1 ID: inner-0: Running jobs synchronously
[junit] 1525996009.25 njs_sdk_test_1 ID: inner-0: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-0', u'wait': 3}]
[junit] Docker logger stdout: 1525996009.25 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 03c69795-1f7a-4cd8-9ef1-562e88954d9b
[junit] Docker logger stdout: 1525996009.25 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525996009.3 njs_sdk_test_1 ID: inner-3: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-3',
[junit] u'jobs': [{u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-3', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525996009.3 njs_sdk_test_1 ID: inner-3: Running jobs synchronously
[junit] 1525996009.3 njs_sdk_test_1 ID: inner-3: synchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-3', u'wait': 3}]
[junit] Docker logger stdout: 1525996009.30 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: b277c999-f1cb-4737-8ace-97937334e81b
[junit] 1525996009.3 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] Docker logger stdout: 1525996009.33 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] got job id 03c69795-1f7a-4cd8-9ef1-562e88954d9b
[junit] 1525996009.36 njs_sdk_test_1 ID: inner-2: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner-2',
[junit] u'jobs': [{u'cli_async': True,
[junit] u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'inner2-2', u'wait': 3}],
[junit] u'ver': u'dev'}],
[junit] u'wait': 2}
[junit] 1525996009.36 njs_sdk_test_1 ID: inner-2: Running jobs synchronously
[junit] 1525996009.36 njs_sdk_test_1 ID: inner-2: asynchronous client run of method: njs_sdk_test_1.run version: dev params:
[junit] [{u'id': u'inner2-2', u'wait': 3}]
[junit] Docker logger stdout: 1525996009.37 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 019e009c-f8c0-4dc7-82ab-d3f107ce5689
[junit] 1525996009.4 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] Docker logger stdout: 1525996009.42 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525996009.44 njs_sdk_test_1 ID: inner2-1: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-1', u'wait': 3}
[junit] 1525996009.44 njs_sdk_test_1 ID: inner2-1: waiting for 3 sec
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: "njs_sdk_test_1.run" job threw an error, name="Server error", code=-32000, message="No more than 10 concurrently running methods are allowed", data:
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: Traceback (most recent call last):
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: result = method(ctx, *params)
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 105, in run
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: res.append(run_cli(j))
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 93, in run_cli
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: p['method'], p['params'], p['ver'])
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 209, in asynchronous_call
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: service_method, params, service_version, json_rpc_context)
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 199, in _asynchronous_call_async
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: params, json_rpc_context)[0]
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 162, in _call
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: raise ServerError(**err['error'])
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: ServerError: JSONRPCError: -32601. No more than 10 concurrently running methods are allowed
[junit] Docker logger stderr: 1525996009.82 - CallbackServer[01159b6e-c62d-4c47-b68b-8e7734ef3934]: No more than 10 concurrently running methods are allowed
[junit] 1525996009.98 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996010.02 njs_sdk_test_1 ID: inner2-0: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-0', u'wait': 3}
[junit] 1525996010.02 njs_sdk_test_1 ID: inner2-0: waiting for 3 sec
[junit] 1525996010.27 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34890
[junit] 1525996010.32 njs_sdk_test_1 ID: inner2-3: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'inner2-3', u'wait': 3}
[junit] 1525996010.32 njs_sdk_test_1 ID: inner2-3: waiting for 3 sec
[junit] 1525996011.11 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'singlejob',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996011.4 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'singlejob2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996012.6 Generic client checking job state
[junit] 1525996012.73 njs_sdk_test_1 ID: inner-1: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996012.73 njs_sdk_test_1 ID: inner-1: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525996012.73 njs_sdk_test_1 ID: inner-1: waiting for 2 sec
[junit] 1525996012.84 Generic client checking job state
[junit] 1525996013.52 njs_sdk_test_1 ID: inner-3: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996013.52 njs_sdk_test_1 ID: inner-3: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525996013.52 njs_sdk_test_1 ID: inner-3: waiting for 2 sec
[junit] 1525996014.34 Generic client checking job state
[junit] 1525996014.35 njs_sdk_test_1 ID: inner-0: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996014.35 njs_sdk_test_1 ID: inner-0: got job results
[junit] [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]]
[junit] 1525996014.35 njs_sdk_test_1 ID: inner-0: waiting for 2 sec
[junit] 1525996015.02 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-1',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-1',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996015.81 njs_sdk_test_1 ID: outer: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-3',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-3',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] 1525996017.61 Generic client checking job state
[junit] 1525996017.62 njs_sdk_test_1 ID: outer: got back from async:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner-0',
[junit] u'jobs': [[{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'inner2-0',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]],
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 2}]
[junit] caught exception running jobs: Server error: -32000. No more than 10 concurrently running methods are allowed
[junit] Traceback (most recent call last):
[junit] File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] result = method(ctx, *params)
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 105, in run
[junit] res.append(run_cli(j))
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 93, in run_cli
[junit] p['method'], p['params'], p['ver'])
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 209, in asynchronous_call
[junit] service_method, params, service_version, json_rpc_context)
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 199, in _asynchronous_call_async
[junit] params, json_rpc_context)[0]
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 162, in _call
[junit] raise ServerError(**err['error'])
[junit] ServerError: JSONRPCError: -32601. No more than 10 concurrently running methods are allowed
[junit] No more than 10 concurrently running methods are allowed
[junit]
[junit] server side traceback:
[junit] Traceback (most recent call last):
[junit] File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] result = method(ctx, *params)
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 105, in run
[junit] res.append(run_cli(j))
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 93, in run_cli
[junit] p['method'], p['params'], p['ver'])
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 209, in asynchronous_call
[junit] service_method, params, service_version, json_rpc_context)
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 199, in _asynchronous_call_async
[junit] params, json_rpc_context)[0]
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 162, in _call
[junit] raise ServerError(**err['error'])
[junit] ServerError: JSONRPCError: -32601. No more than 10 concurrently running methods are allowed
[junit] No more than 10 concurrently running methods are allowed
[junit]
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: "njs_sdk_test_1.run" job threw an error, name="Server error", code=-32000, message="No more than 10 concurrently running methods are allowed", data:
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: Traceback (most recent call last):
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: result = method(ctx, *params)
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 110, in run
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: res = [r.get() if type(r) == ApplyResult else r for r in res]
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/usr/lib/python2.7/multiprocessing/pool.py", line 558, in get
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: raise self._value
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: ServerError: Server error: -32000. No more than 10 concurrently running methods are allowed
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: Traceback (most recent call last):
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: result = method(ctx, *params)
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 105, in run
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: res.append(run_cli(j))
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 93, in run_cli
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: p['method'], p['params'], p['ver'])
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 209, in asynchronous_call
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: service_method, params, service_version, json_rpc_context)
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 199, in _asynchronous_call_async
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: params, json_rpc_context)[0]
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 162, in _call
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: raise ServerError(**err['error'])
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: ServerError: JSONRPCError: -32601. No more than 10 concurrently running methods are allowed
[junit] Docker logger stderr: 1525996017.98 - CallbackServer[cd1d3895-cac7-4402-9b46-4b0cf542e0e2]: No more than 10 concurrently running methods are allowed
[junit] got traceback from server in test:
[junit] Traceback (most recent call last):
[junit] File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] result = method(ctx, *params)
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 110, in run
[junit] res = [r.get() if type(r) == ApplyResult else r for r in res]
[junit] File "/usr/lib/python2.7/multiprocessing/pool.py", line 558, in get
[junit] raise self._value
[junit] ServerError: Server error: -32000. No more than 10 concurrently running methods are allowed
[junit] Traceback (most recent call last):
[junit] File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] result = method(ctx, *params)
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 105, in run
[junit] res.append(run_cli(j))
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 93, in run_cli
[junit] p['method'], p['params'], p['ver'])
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 209, in asynchronous_call
[junit] service_method, params, service_version, json_rpc_context)
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 199, in _asynchronous_call_async
[junit] params, json_rpc_context)[0]
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 162, in _call
[junit] raise ServerError(**err['error'])
[junit] ServerError: JSONRPCError: -32601. No more than 10 concurrently running methods are allowed
[junit] No more than 10 concurrently running methods are allowed
[junit]
[junit]
[junit] Docker logger stdout: 1525996017.99 - CallbackServer: Shutting down executor service
[junit] Running async in dir temp_test_callback/cbt9124379754265456128
[junit] Docker logger stdout: 1525996019.07 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 46c8fd6f-7ad9-4d2a-9819-e0840e33f1c2
[junit] Docker logger stdout: 1525996019.21 - CallbackServer: Running module njs_sdk_test_1:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525996019.72 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:34308
[junit] 1525996019.75 njs_sdk_test_1 ID: simplejob: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'simplejob', u'wait': 10}
[junit] 1525996019.75 njs_sdk_test_1 ID: simplejob: waiting for 10 sec
[junit] got traceback from server in test:
[junit] Either there is no job with ID b1c49211-0b77-4df3-8bdc-620537ebb37d or it has expired from the cache
[junit] Docker logger stdout: 1525996030.35 - CallbackServer: Shutting down executor service
[junit] Running checkwithBadArgs in dir temp_test_callback/cbt1464361111441140400
[junit] got traceback from server in test:
[junit] Invalid job ID: 57ed080e-10e5-4fba-bf92-2a13ecb215dg
[junit] got traceback from server in test:
[junit] The job ID must be a string
[junit] got traceback from server in test:
[junit] Check methods take exactly one argument
[junit] Docker logger stdout: 1525996031.45 - CallbackServer: Shutting down executor service
[junit] Running badRelease in dir temp_test_callback/cbt1885946147109997798
[junit] Docker logger stdout: 1525996032.53 - CallbackServer: Subjob method: njs_sdk_test_1foo.run JobID: 3bf38555-3417-4d06-81c9-02e0ffa2cfb0
[junit] got traceback from server in test:
[junit] Error looking up module njs_sdk_test_1foo with version beta: Module cannot be found based on module_name or git_url parameters.
[junit] Docker logger stdout: 1525996032.65 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: c14d1212-942d-46ad-8441-d188762512bc
[junit] got traceback from server in test:
[junit] Error looking up module njs_sdk_test_1 with version beta: No module version found that matches your criteria!
[junit] Docker logger stdout: 1525996032.71 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: a5abab90-de4a-4a28-a4ee-a2d158c644d7
[junit] got traceback from server in test:
[junit] Error looking up module njs_sdk_test_1 with version release: No module version found that matches your criteria!
[junit] Docker logger stdout: 1525996032.78 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: ce61a031-bf90-4b2b-9ec4-ff10849563df
[junit] got traceback from server in test:
[junit] Error looking up module njs_sdk_test_1 with version release: No module version found that matches your criteria!
[junit] Docker logger stdout: 1525996032.85 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 1c7e21f1-a071-42ac-9cc6-3fd438a70e26
[junit] got traceback from server in test:
[junit] Error looking up module njs_sdk_test_1 with version b0d487271c22f793b381da29e266faa9bb0b2d1b: No module version found that matches your criteria!
[junit] Docker logger stdout: 1525996032.91 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 952ee047-52f6-4922-9de8-a2032d3b6082
[junit] got traceback from server in test:
[junit] Error looking up module njs_sdk_test_1 with version foo: No module version found that matches your criteria!
[junit] Docker logger stdout: 1525996032.96 - CallbackServer: Shutting down executor service
[junit] Running badMethod in dir temp_test_callback/cbt670196682324161391
[junit] got traceback from server in test:
[junit] null
[junit] got traceback from server in test:
[junit] Illegal method name: njs_sdk_test_1.r.un
[junit] Docker logger stdout: 1525996034.11 - CallbackServer: Shutting down executor service
[junit] Running setProvenance in dir temp_test_callback/cbt7671967057442040434
[junit] Docker logger stdout: 1525996035.25 - CallbackServer: Subjob method: njs_sdk_test_2.run JobID: a87547a5-accd-44b3-bb6c-e35ff4504ee2
[junit] Docker logger stdout: 1525996035.31 - CallbackServer: Running module njs_sdk_test_2:
[junit] url: https://github.com/kbasetest/njs_sdk_test_2
[junit] commit: 90149814a1581277800b7c3e172b57796c9c323b
[junit] version: 0.0.9
[junit] release: dev
[junit]
[junit] 1525996035.85 njs_sdk_test_2 ID: None: Callback URL: http://172.17.0.1:32933
[junit] 1525996035.89 njs_sdk_test_2 ID: myid: Running commit 90149814a1581277800b7c3e172b57796c9c323b with params:
[junit] {u'id': u'myid'}
[junit] [ProvenanceAction [time=2018-05-10T23:47:15+0000, epoch=null, caller=null, service=aservice, serviceVer=0.0.2-dev, method=amethod, methodParams=[UObject [userObj=["foo1","bar1"]], UObject [userObj={"foo1":"bar1"}]], script=null, scriptVer=null, scriptCommandLine=null, inputWsObjects=[foo1, bar1, baz1], resolvedWsObjects=null, intermediateIncoming=null, intermediateOutgoing=null, externalData=null, subactions=[SubAction [name=njs_sdk_test_2, ver=0.0.9-dev, codeUrl=https://github.com/kbasetest/njs_sdk_test_2, commit=90149814a1581277800b7c3e172b57796c9c323b, endpointUrl=null, additionalProperties={}]], custom=null, description=null, additionalProperties={}]]
[junit] got traceback from server in test:
[junit] java.lang.NullPointerException: Provenance cannot be null
[junit] at us.kbase.common.executionengine.CallbackServer.resetProvenanceAndMethods(CallbackServer.java:144)
[junit] at us.kbase.mobu.tester.SDKCallbackServer.setProvenance(SDKCallbackServer.java:63)
[junit] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[junit] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[junit] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] at java.lang.reflect.Method.invoke(Method.java:498)
[junit] at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:196)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit]
[junit] Docker logger stdout: 1525996036.30 - CallbackServer: Shutting down executor service
[junit] Running multiCallProvenance in dir temp_test_callback/cbt7070913058457027269
[junit] Docker logger stdout: 1525996037.38 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: 27d17fe4-63b2-4dc0-af70-9fef8bfc0a1e
[junit] Docker logger stdout: 1525996037.38 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525996038.07 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:35958
[junit] 1525996038.11 njs_sdk_test_1 ID: myid: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'myid',
[junit] u'jobs': [{u'method': u'njs_sdk_test_2.run',
[junit] u'params': [{u'id': u'id1', u'wait': 3}],
[junit] u'ver': u'284948a93524ba51e48b1c71693b269647c125c3'},
[junit] {u'method': u'njs_sdk_test_1.run',
[junit] u'params': [{u'id': u'id2', u'wait': 3}],
[junit] u'ver': u'03b9210ac825858c1ae6339786686cea5dac5929'},
[junit] {u'method': u'njs_sdk_test_2.run',
[junit] u'params': [{u'id': u'id3', u'wait': 3}],
[junit] u'ver': u'dev'}]}
[junit] 1525996038.11 njs_sdk_test_1 ID: myid: Running jobs synchronously
[junit] 1525996038.11 njs_sdk_test_1 ID: myid: synchronous client run of method: njs_sdk_test_2.run version: 284948a93524ba51e48b1c71693b269647c125c3 params:
[junit] [{u'id': u'id1', u'wait': 3}]
[junit] Docker logger stdout: 1525996038.11 - CallbackServer: Subjob method: njs_sdk_test_2.run JobID: d5c6bc68-97e4-491d-b704-7b32271aa48d
[junit] Docker logger stdout: 1525996038.13 - CallbackServer: Running module njs_sdk_test_2:
[junit] url: https://github.com/kbasetest/njs_sdk_test_2
[junit] commit: 284948a93524ba51e48b1c71693b269647c125c3
[junit] version: 0.0.8
[junit] release: null
[junit]
[junit] 1525996038.66 njs_sdk_test_2 ID: None: Callback URL: http://172.17.0.1:35958
[junit] 1525996038.71 njs_sdk_test_2 ID: id1: Running commit 284948a93524ba51e48b1c71693b269647c125c3 with params:
[junit] {u'id': u'id1', u'wait': 3}
[junit] 1525996038.71 njs_sdk_test_2 ID: id1: waiting for 3 sec
[junit] 1525996041.99 njs_sdk_test_1 ID: myid: got back from sync:
[junit] [{u'hash': u'284948a93524ba51e48b1c71693b269647c125c3',
[junit] u'id': u'id1',
[junit] u'name': u'njs_sdk_test_2',
[junit] u'wait': 3}]
[junit] 1525996041.99 njs_sdk_test_1 ID: myid: synchronous client run of method: njs_sdk_test_1.run version: 03b9210ac825858c1ae6339786686cea5dac5929 params:
[junit] [{u'id': u'id2', u'wait': 3}]
[junit] Docker logger stdout: 1525996041.99 - CallbackServer: Subjob method: njs_sdk_test_1.run JobID: d544f6a6-155b-4b7d-92ba-16eca478d931
[junit] Docker logger stdout: 1525996041.99 - CallbackServer: WARNING: Module njs_sdk_test_1 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_1
[junit] commit: 03b9210ac825858c1ae6339786686cea5dac5929
[junit] version: 0.0.3
[junit] release: dev
[junit]
[junit] 1525996042.64 njs_sdk_test_1 ID: None: Callback URL: http://172.17.0.1:35958
[junit] 1525996042.68 njs_sdk_test_1 ID: id2: Running commit 03b9210ac825858c1ae6339786686cea5dac5929 with params:
[junit] {u'id': u'id2', u'wait': 3}
[junit] 1525996042.68 njs_sdk_test_1 ID: id2: waiting for 3 sec
[junit] 1525996045.94 njs_sdk_test_1 ID: myid: got back from sync:
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'id2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}]
[junit] 1525996045.94 njs_sdk_test_1 ID: myid: synchronous client run of method: njs_sdk_test_2.run version: dev params:
[junit] [{u'id': u'id3', u'wait': 3}]
[junit] Docker logger stdout: 1525996045.95 - CallbackServer: Subjob method: njs_sdk_test_2.run JobID: c9e8098e-8879-403b-9c2b-28c327740810
[junit] Docker logger stdout: 1525996045.95 - CallbackServer: WARNING: Module njs_sdk_test_2 was already used once for this job. Using cached version:
[junit] url: https://github.com/kbasetest/njs_sdk_test_2
[junit] commit: 284948a93524ba51e48b1c71693b269647c125c3
[junit] version: 0.0.8
[junit] release: null
[junit]
[junit] 1525996046.56 njs_sdk_test_2 ID: None: Callback URL: http://172.17.0.1:35958
[junit] 1525996046.62 njs_sdk_test_2 ID: id3: Running commit 284948a93524ba51e48b1c71693b269647c125c3 with params:
[junit] {u'id': u'id3', u'wait': 3}
[junit] 1525996046.62 njs_sdk_test_2 ID: id3: waiting for 3 sec
[junit] 1525996049.9 njs_sdk_test_1 ID: myid: got back from sync:
[junit] [{u'hash': u'284948a93524ba51e48b1c71693b269647c125c3',
[junit] u'id': u'id3',
[junit] u'name': u'njs_sdk_test_2',
[junit] u'wait': 3}]
[junit] 1525996049.9 njs_sdk_test_1 ID: myid: got job results
[junit] [[{u'hash': u'284948a93524ba51e48b1c71693b269647c125c3',
[junit] u'id': u'id1',
[junit] u'name': u'njs_sdk_test_2',
[junit] u'wait': 3}],
[junit] [{u'hash': u'03b9210ac825858c1ae6339786686cea5dac5929',
[junit] u'id': u'id2',
[junit] u'name': u'njs_sdk_test_1',
[junit] u'wait': 3}],
[junit] [{u'hash': u'284948a93524ba51e48b1c71693b269647c125c3',
[junit] u'id': u'id3',
[junit] u'name': u'njs_sdk_test_2',
[junit] u'wait': 3}]]
[junit] Docker logger stdout: 1525996050.24 - CallbackServer: Shutting down executor service
[junit] ------------- ---------------- ---------------
[junit] ------------- Standard Error -----------------
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] java.lang.IllegalStateException: No more than 10 concurrently running methods are allowed
[junit] at us.kbase.common.executionengine.CallbackServer.incrementJobCount(CallbackServer.java:329)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:251)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Traceback (most recent call last):
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 110, in run
[junit] res = [r.get() if type(r) == ApplyResult else r for r in res]
[junit] File "/usr/lib/python2.7/multiprocessing/pool.py", line 558, in get
[junit] raise self._value
[junit] ServerError: Server error: -32000. No more than 10 concurrently running methods are allowed
[junit] Traceback (most recent call last):
[junit] File "/kb/module/bin/../lib/njs_sdk_test_1/njs_sdk_test_1Server.py", line 95, in _call_method
[junit] result = method(ctx, *params)
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 105, in run
[junit] res.append(run_cli(j))
[junit] File "/kb/module/lib/njs_sdk_test_1/njs_sdk_test_1Impl.py", line 93, in run_cli
[junit] p['method'], p['params'], p['ver'])
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 209, in asynchronous_call
[junit] service_method, params, service_version, json_rpc_context)
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 199, in _asynchronous_call_async
[junit] params, json_rpc_context)[0]
[junit] File "/kb/module/lib/njs_sdk_test_1/GenericClient.py", line 162, in _call
[junit] raise ServerError(**err['error'])
[junit] ServerError: JSONRPCError: -32601. No more than 10 concurrently running methods are allowed
[junit] No more than 10 concurrently running methods are allowed
[junit]
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] java.lang.IllegalStateException: Either there is no job with ID b1c49211-0b77-4df3-8bdc-620537ebb37d or it has expired from the cache
[junit] at us.kbase.common.executionengine.CallbackServer.runCheck(CallbackServer.java:381)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:241)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Invalid job ID: 57ed080e-10e5-4fba-bf92-2a13ecb215dg
[junit] at us.kbase.common.executionengine.CallbackServer.runCheck(CallbackServer.java:359)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:241)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: The job ID must be a string
[junit] at us.kbase.common.executionengine.CallbackServer.runCheck(CallbackServer.java:353)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:241)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Check methods take exactly one argument
[junit] at us.kbase.common.executionengine.CallbackServer.runCheck(CallbackServer.java:345)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:241)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Error looking up module njs_sdk_test_1foo with version beta: Module cannot be found based on module_name or git_url parameters.
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.loadModuleVersion(SubsequentCallRunner.java:78)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.loadModuleVersion(SDKSubsequentCallRunner.java:48)
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.<init>(SubsequentCallRunner.java:55)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.<init>(SDKSubsequentCallRunner.java:33)
[junit] at us.kbase.mobu.tester.SDKCallbackServer$1.<init>(SDKCallbackServer.java:52)
[junit] at us.kbase.mobu.tester.SDKCallbackServer.createJobRunner(SDKCallbackServer.java:51)
[junit] at us.kbase.common.executionengine.CallbackServer.getJobRunner(CallbackServer.java:475)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:246)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Error looking up module njs_sdk_test_1 with version beta: No module version found that matches your criteria!
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.loadModuleVersion(SubsequentCallRunner.java:78)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.loadModuleVersion(SDKSubsequentCallRunner.java:48)
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.<init>(SubsequentCallRunner.java:55)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.<init>(SDKSubsequentCallRunner.java:33)
[junit] at us.kbase.mobu.tester.SDKCallbackServer$1.<init>(SDKCallbackServer.java:52)
[junit] at us.kbase.mobu.tester.SDKCallbackServer.createJobRunner(SDKCallbackServer.java:51)
[junit] at us.kbase.common.executionengine.CallbackServer.getJobRunner(CallbackServer.java:475)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:246)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Error looking up module njs_sdk_test_1 with version release: No module version found that matches your criteria!
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.loadModuleVersion(SubsequentCallRunner.java:78)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.loadModuleVersion(SDKSubsequentCallRunner.java:48)
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.<init>(SubsequentCallRunner.java:55)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.<init>(SDKSubsequentCallRunner.java:33)
[junit] at us.kbase.mobu.tester.SDKCallbackServer$1.<init>(SDKCallbackServer.java:52)
[junit] at us.kbase.mobu.tester.SDKCallbackServer.createJobRunner(SDKCallbackServer.java:51)
[junit] at us.kbase.common.executionengine.CallbackServer.getJobRunner(CallbackServer.java:475)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:246)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Error looking up module njs_sdk_test_1 with version release: No module version found that matches your criteria!
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.loadModuleVersion(SubsequentCallRunner.java:78)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.loadModuleVersion(SDKSubsequentCallRunner.java:48)
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.<init>(SubsequentCallRunner.java:55)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.<init>(SDKSubsequentCallRunner.java:33)
[junit] at us.kbase.mobu.tester.SDKCallbackServer$1.<init>(SDKCallbackServer.java:52)
[junit] at us.kbase.mobu.tester.SDKCallbackServer.createJobRunner(SDKCallbackServer.java:51)
[junit] at us.kbase.common.executionengine.CallbackServer.getJobRunner(CallbackServer.java:475)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:246)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Error looking up module njs_sdk_test_1 with version b0d487271c22f793b381da29e266faa9bb0b2d1b: No module version found that matches your criteria!
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.loadModuleVersion(SubsequentCallRunner.java:78)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.loadModuleVersion(SDKSubsequentCallRunner.java:48)
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.<init>(SubsequentCallRunner.java:55)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.<init>(SDKSubsequentCallRunner.java:33)
[junit] at us.kbase.mobu.tester.SDKCallbackServer$1.<init>(SDKCallbackServer.java:52)
[junit] at us.kbase.mobu.tester.SDKCallbackServer.createJobRunner(SDKCallbackServer.java:51)
[junit] at us.kbase.common.executionengine.CallbackServer.getJobRunner(CallbackServer.java:475)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:246)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Error looking up module njs_sdk_test_1 with version foo: No module version found that matches your criteria!
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.loadModuleVersion(SubsequentCallRunner.java:78)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.loadModuleVersion(SDKSubsequentCallRunner.java:48)
[junit] at us.kbase.common.executionengine.SubsequentCallRunner.<init>(SubsequentCallRunner.java:55)
[junit] at us.kbase.mobu.tester.SDKSubsequentCallRunner.<init>(SDKSubsequentCallRunner.java:33)
[junit] at us.kbase.mobu.tester.SDKCallbackServer$1.<init>(SDKCallbackServer.java:52)
[junit] at us.kbase.mobu.tester.SDKCallbackServer.createJobRunner(SDKCallbackServer.java:51)
[junit] at us.kbase.common.executionengine.CallbackServer.getJobRunner(CallbackServer.java:475)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:246)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] java.lang.IllegalArgumentException: Illegal method name: njs_sdk_test_1.r.un
[junit] at us.kbase.common.executionengine.ModuleMethod.<init>(ModuleMethod.java:32)
[junit] at us.kbase.common.executionengine.CallbackServer.handleCall(CallbackServer.java:237)
[junit] at us.kbase.common.executionengine.CallbackServer.processRpcCall(CallbackServer.java:201)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
[junit] at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:530)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:426)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:118)
[junit] at org.eclipse.jetty.server.session.SessionHandler.handle(SessionHandler.java:179)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:930)
[junit] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:361)
[junit] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:864)
[junit] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:116)
[junit] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:112)
[junit] at org.eclipse.jetty.server.Server.handle(Server.java:337)
[junit] at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:552)
[junit] at org.eclipse.jetty.server.HttpConnection$RequestHandler.content(HttpConnection.java:993)
[junit] at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:739)
[junit] at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:209)
[junit] at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:399)
[junit] at org.eclipse.jetty.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:437)
[junit] at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:435)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: maxJobs took 38.566 sec
[junit] Testcase: async took 12.35 sec
[junit] Testcase: checkWithBadArgs took 1.101 sec
[junit] Testcase: badRelease took 1.502 sec
[junit] Testcase: badMethod took 1.153 sec
[junit] Testcase: setProvenance took 2.179 sec
[junit] Testcase: multiCallProvenance took 13.944 sec
[junit] Running us.kbase.mobu.tester.test.ModuleTesterTest
[junit] Testsuite: us.kbase.mobu.tester.test.ModuleTesterTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 235.666 sec
[junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 235.666 sec
[junit] ------------- Standard Output ---------------
[junit] Test [testPerlModuleExample]
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingPerl directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd ASimpleModule_for_unit_testingPerl
[junit] make (required after making changes to ASimpleModule_for_unit_testingPerl.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit]
[junit] Validating module in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPerl)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPerl/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingperl:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc About a minute ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 2 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 2 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 3 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 3 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 4 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 4 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 5 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 5 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 6 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.835MB
[junit]
[junit] Step 1/12 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/12 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/12 : RUN cpanm -i Config::IniFiles
[junit] ---> Using cache
[junit] ---> d230f667e5eb
[junit] Step 4/12 : RUN cpanm -i Bio::SeqIO
[junit] ---> Using cache
[junit] ---> f6bffe0089b2
[junit] Step 5/12 : COPY ./ /kb/module
[junit] ---> 974a49796976
[junit] Step 6/12 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in d13cf4a4cc37
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,893 bytes received 303 bytes 4,104,392.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container d13cf4a4cc37
[junit] ---> 3082e2caa893
[junit] Step 7/12 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 064fbc7c305b
[junit] Removing intermediate container 064fbc7c305b
[junit] ---> f6f9e1fbf262
[junit] Step 8/12 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 08527da957f1
[junit] Removing intermediate container 08527da957f1
[junit] ---> a8d5fa4758b5
[junit] Step 9/12 : WORKDIR /kb/module
[junit] Removing intermediate container c23fb638b912
[junit] ---> 7fc4a03a42f1
[junit] Step 10/12 : RUN make all
[junit] ---> Running in 35ddef9839f0
[junit] kb-sdk compile ASimpleModule_for_unit_testingPerl.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingPerl::ASimpleModule_for_unit_testingPerlClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingPerl.ASimpleModule_for_unit_testingPerlClient \
[junit] --javasrc src \
[junit] --java \
[junit] --plsrvname ASimpleModule_for_unit_testingPerl::ASimpleModule_for_unit_testingPerlServer \
[junit] --plimplname ASimpleModule_for_unit_testingPerl::ASimpleModule_for_unit_testingPerlImpl \
[junit] --plpsginame ASimpleModule_for_unit_testingPerl.psgi;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> scripts/start_server.sh
[junit] echo 'plackup $script_dir/../lib/ASimpleModule_for_unit_testingPerl.psgi' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_ASimpleModule_for_unit_testingPerl_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_ASimpleModule_for_unit_testingPerl_async_job.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> bin/run_ASimpleModule_for_unit_testingPerl_async_job.sh
[junit] echo 'perl $script_dir/../lib/ASimpleModule_for_unit_testingPerl/ASimpleModule_for_unit_testingPerlServer.pm $1 $2 $3' >> bin/run_ASimpleModule_for_unit_testingPerl_async_job.sh
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingPerl_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo "perl -e 'opendir my \$dh, \".\"; my @l = grep { /\\\\.pl\$/ } readdir \$dh; my \$ret=0; foreach my \$s (@l) { print(\"Running \".\$s.\"\\\\n\"); system(\"perl\", \$s) && do{\$ret=2; next;}; } exit(\$ret);'" >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 35ddef9839f0
[junit] ---> 42ecb40432ae
[junit] Step 11/12 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 2c4e7efd8449
[junit] Removing intermediate container 2c4e7efd8449
[junit] ---> 025ce0b97960
[junit] Step 12/12 : CMD [ ]
[junit] ---> Running in 28094068cbea
[junit] Removing intermediate container 28094068cbea
[junit] ---> 1d6c9101e24f
[junit] Successfully built 1d6c9101e24f
[junit] Successfully tagged test/asimplemodule_for_unit_testingperl:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] Running ASimpleModule_for_unit_testingPerl_server_test.pl
[junit] 1525996063.44 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 8bd1df7f-c15f-413d-b560-38d7b83aad09
[junit] 1525996063.55 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_ASimpleModule_for_unit_testingPerl_1525996063324'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996064.21 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: d3d59af1-aba7-499d-ac32-cfa1b784eb29
[junit] 1525996064.28 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996065.17: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525996065.72 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: c74d9f92-2e82-4972-8333-f1f0052d3a3a
[junit] 1525996065.72 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996066.48: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996066.57: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525996066.86: uploading done into shock node: a18962b8-1ca6-4a1d-9009-ab858f4ccb54
[junit] 1525996067.18 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: dfd8ed9e-8c54-4dfe-9bd7-1003dde484a7
[junit] 1525996067.18 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996067.91: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996068.61 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 6e8e71d2-b890-4916-bf60-d07d34bbd45e
[junit] 1525996068.61 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996069.35: Shock url: https://ci.kbase.us/services/shock-api
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'workspace_name' => 'test_ASimpleModule_for_unit_testingPerl_1525996063324',
[junit] 'assembly_input_ref' => '32657/1/1',
[junit] 'min_length' => 10
[junit] };
[junit]
[junit] Downloading assembly data as FASTA file.
[junit] 1525996075.02 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 812d6402-8ad1-483a-9acc-06594c23a0ff
[junit] 1525996075.02 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (32657/1/1)
[junit] 1525996075.69 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: 38c7e092-c96f-4e1f-81dc-2e31e39af954
[junit] 1525996075.69 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996076.35: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996077.11 - CallbackServer: Subjob method: DataFileUtil.shock_to_file JobID: 6a7803fd-8ace-4e35-b377-59373303dc37
[junit] 1525996077.11 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996077.87: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996077.94: Fetching info for handle: KBH_252116
[junit] 1525996078.05: downloading shock node a18962b8-1ca6-4a1d-9009-ab858f4ccb54 into file: /kb/module/work/tmp/TestAssembly.fa
[junit] 1525996078.11: downloading done
[junit] Filtered assembly to 2 contigs out of 3
[junit] 1525996080.17 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: c75cde18-7a19-4c2a-a06b-f054e8911866
[junit] 1525996080.17 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/filtered.fasta'},
[junit] u'workspace_name': u'test_ASimpleModule_for_unit_testingPerl_1525996063324'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996080.97 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: f2cc3c42-7f95-4637-9adc-a2fd650b6437
[junit] 1525996080.97 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996081.71: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/filtered.fasta
[junit] - parsed 2 contigs, 22bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/filtered.fasta) to SHOCK
[junit] 1525996082.42 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 9300be3a-c676-4a67-94c5-7b0011a427e1
[junit] 1525996082.42 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996083.2: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996083.26: uploading file /kb/module/work/tmp/filtered.fasta into shock node
[junit] 1525996083.62: uploading done into shock node: f9af12ef-1243-4d75-bab3-34a96c4d054a
[junit] 1525996084.62 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 5c87ef76-aa8d-478b-96d9-9a037263195d
[junit] 1525996084.62 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996085.44: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996086.05 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 18495271-6d15-4161-8e36-82404bc4d13c
[junit] 1525996086.05 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996086.87: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996087.82 - CallbackServer: Subjob method: KBaseReport.create JobID: 3396358a-4f63-4d58-8a19-0c3402c8bbac
[junit] 1525996087.90 - CallbackServer: Running module KBaseReport:
[junit] url: https://github.com/kbaseapps/KBaseReport
[junit] commit: 2cd253149595332c86667495032134ba64a7a96e
[junit] version: 2.3.1
[junit] release: release
[junit]
[junit] Creating KBase Report
[junit] Report Name report_8edf3e35-b1df-85e6-2bd9-b8e717f35b10
[junit] returning: $VAR1 = {
[junit] 'report_ref' => '32657/2/1',
[junit] 'n_contigs_removed' => 1,
[junit] 'n_contigs_remaining' => 2,
[junit] 'report_name' => 'report_8edf3e35-b1df-85e6-2bd9-b8e717f35b10',
[junit] 'assembly_output' => '32657/1/2',
[junit] 'n_initial_contigs' => 3
[junit] };
[junit]
[junit] ok 1 - number of initial contigs
[junit] ok 2 - number of removed contigs
[junit] ok 3 - number of remaining contigs
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'workspace_name' => 'test_ASimpleModule_for_unit_testingPerl_1525996063324',
[junit] 'assembly_input_ref' => 'fake',
[junit] 'min_length' => 10
[junit] };
[junit]
[junit] Downloading assembly data as FASTA file.
[junit] 1525996091.19 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: e2b6d9d0-4624-4f1f-b287-cfa53090bed2
[junit] 1525996091.19 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (fake)
[junit] 1525996091.89 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: cdd6613e-92cd-4eb2-a55d-0449f493eb2d
[junit] 1525996091.89 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996092.59: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996092.71: Logging workspace error on get_objects: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] at java.lang.reflect.Method.invoke(Method.java:498)
[junit] at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] ... 36 more
[junit]
[junit] ok 4
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'min_length' => -10,
[junit] 'assembly_input_ref' => 'fake',
[junit] 'workspace_name' => 'test_ASimpleModule_for_unit_testingPerl_1525996063324'
[junit] };
[junit]
[junit] ok 5
[junit] Starting filter contigs method. Parameters:
[junit] $VAR1 = {
[junit] 'assembly_input_ref' => 'fake',
[junit] 'workspace_name' => 'test_ASimpleModule_for_unit_testingPerl_1525996063324'
[junit] };
[junit]
[junit] ok 6
[junit] 1..6
[junit] Test workspace was deleted
[junit] Shutting down callback server...
[junit] 1525996094.81 - CallbackServer: Shutting down executor service
[junit] Exit code: 0
[junit]
[junit] Test [testPerlModuleError]
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingPerlError directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd ASimpleModule_for_unit_testingPerlError
[junit] make (required after making changes to ASimpleModule_for_unit_testingPerlError.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit]
[junit] Validating module in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPerlError)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPerlError/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingperlerror:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/asimplemodule_for_unit_testingperl latest 1d6c9101e24f 34 seconds ago 5.33GB
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc 2 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 2 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 3 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 4 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 4 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 4 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 5 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 5 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 6 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 7 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.835MB
[junit]
[junit] Step 1/12 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/12 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/12 : RUN cpanm -i Config::IniFiles
[junit] ---> Using cache
[junit] ---> d230f667e5eb
[junit] Step 4/12 : RUN cpanm -i Bio::SeqIO
[junit] ---> Using cache
[junit] ---> f6bffe0089b2
[junit] Step 5/12 : COPY ./ /kb/module
[junit] ---> 075e83978f78
[junit] Step 6/12 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in ae7b86895949
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container ae7b86895949
[junit] ---> 2d9b84020acc
[junit] Step 7/12 : RUN mkdir -p /kb/module/work
[junit] ---> Running in f54111a2776d
[junit] Removing intermediate container f54111a2776d
[junit] ---> ea382a2702c9
[junit] Step 8/12 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in d8273ec5a17b
[junit] Removing intermediate container d8273ec5a17b
[junit] ---> 9bc55d540962
[junit] Step 9/12 : WORKDIR /kb/module
[junit] Removing intermediate container 046d41b5dd9d
[junit] ---> 3fec42d2ec81
[junit] Step 10/12 : RUN make all
[junit] ---> Running in a8f69b20c474
[junit] kb-sdk compile ASimpleModule_for_unit_testingPerlError.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingPerlError::ASimpleModule_for_unit_testingPerlErrorClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingPerlError.ASimpleModule_for_unit_testingPerlErrorClient \
[junit] --javasrc src \
[junit] --java \
[junit] --plsrvname ASimpleModule_for_unit_testingPerlError::ASimpleModule_for_unit_testingPerlErrorServer \
[junit] --plimplname ASimpleModule_for_unit_testingPerlError::ASimpleModule_for_unit_testingPerlErrorImpl \
[junit] --plpsginame ASimpleModule_for_unit_testingPerlError.psgi;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> scripts/start_server.sh
[junit] echo 'plackup $script_dir/../lib/ASimpleModule_for_unit_testingPerlError.psgi' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_ASimpleModule_for_unit_testingPerlError_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_ASimpleModule_for_unit_testingPerlError_async_job.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> bin/run_ASimpleModule_for_unit_testingPerlError_async_job.sh
[junit] echo 'perl $script_dir/../lib/ASimpleModule_for_unit_testingPerlError/ASimpleModule_for_unit_testingPerlErrorServer.pm $1 $2 $3' >> bin/run_ASimpleModule_for_unit_testingPerlError_async_job.sh
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingPerlError_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PERL5LIB=$script_dir/../lib:$PATH:$PERL5LIB' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo "perl -e 'opendir my \$dh, \".\"; my @l = grep { /\\\\.pl\$/ } readdir \$dh; my \$ret=0; foreach my \$s (@l) { print(\"Running \".\$s.\"\\\\n\"); system(\"perl\", \$s) && do{\$ret=2; next;}; } exit(\$ret);'" >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container a8f69b20c474
[junit] ---> a868a4a29aa5
[junit] Step 11/12 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 38ef88573d5e
[junit] Removing intermediate container 38ef88573d5e
[junit] ---> e531733bf2e3
[junit] Step 12/12 : CMD [ ]
[junit] ---> Running in 68670ab34a57
[junit] Removing intermediate container 68670ab34a57
[junit] ---> c6d1dbc73b48
[junit] Successfully built c6d1dbc73b48
[junit] Successfully tagged test/asimplemodule_for_unit_testingperlerror:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] Running ASimpleModule_for_unit_testingPerlError_server_test.pl
[junit] 1525996103.76 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 5503c472-1d6f-43c9-84d7-525d123615c8
[junit] 1525996103.90 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_ASimpleModule_for_unit_testingPerlError_1525996103719'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996104.58 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: d77fa592-390c-43d6-a32d-3445dfef073c
[junit] 1525996104.63 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996105.33: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525996106.02 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 65538dcb-6e9d-453b-bd02-4ca2b28b8f89
[junit] 1525996106.02 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996106.71: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996106.78: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525996107.01: uploading done into shock node: 10f8681f-d20e-4dc9-a094-eae62fb85238
[junit] 1525996107.44 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: c0635b0e-2b06-4bf5-9c34-701b86733756
[junit] 1525996107.44 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996108.1: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996108.84 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 280b7eeb-0712-43a5-a58e-081736d53a16
[junit] 1525996108.84 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996109.53: Shock url: https://ci.kbase.us/services/shock-api
[junit] Test workspace was deleted
[junit] Shutting down callback server...
[junit] 1525996111.72 - CallbackServer: Shutting down executor service
[junit] Exit code: 2
[junit]
[junit] Test [testPythonModuleExample]
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingPython directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd ASimpleModule_for_unit_testingPython
[junit] make (required after making changes to ASimpleModule_for_unit_testingPython.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit]
[junit] Validating module in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPython)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPython/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingpython:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/asimplemodule_for_unit_testingperlerror latest c6d1dbc73b48 11 seconds ago 5.33GB
[junit] test/asimplemodule_for_unit_testingperl latest 1d6c9101e24f 51 seconds ago 5.33GB
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc 2 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 3 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 3 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 4 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 4 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 5 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 5 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 6 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 6 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 7 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.832MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> a6e1d6c81f34
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in 0217d891d2b4
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,893 bytes received 303 bytes 4,104,392.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container 0217d891d2b4
[junit] ---> a7afa0ef5563
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in c02ef89cff0a
[junit] Removing intermediate container c02ef89cff0a
[junit] ---> 08abf44baac4
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in e05f9140e579
[junit] Removing intermediate container e05f9140e579
[junit] ---> af8f9e8ff613
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container 5a42febe0f77
[junit] ---> 7d1624169440
[junit] Step 8/10 : RUN make all
[junit] ---> Running in 0708f73f3ce5
[junit] kb-sdk compile ASimpleModule_for_unit_testingPython.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingPython::ASimpleModule_for_unit_testingPythonClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingPython.ASimpleModule_for_unit_testingPythonClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname ASimpleModule_for_unit_testingPython.ASimpleModule_for_unit_testingPythonServer \
[junit] --pyimplname ASimpleModule_for_unit_testingPython.ASimpleModule_for_unit_testingPythonImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> scripts/start_server.sh
[junit] echo 'uwsgi --master --processes 5 --threads 5 --http :5000 --wsgi-file $script_dir/../lib/ASimpleModule_for_unit_testingPython/ASimpleModule_for_unit_testingPythonServer.py' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_ASimpleModule_for_unit_testingPython_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_ASimpleModule_for_unit_testingPython_async_job.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> bin/run_ASimpleModule_for_unit_testingPython_async_job.sh
[junit] echo 'python -u $script_dir/../lib/ASimpleModule_for_unit_testingPython/ASimpleModule_for_unit_testingPythonServer.py $1 $2 $3' >> bin/run_ASimpleModule_for_unit_testingPython_async_job.sh
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingPython_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo 'python -m nose --with-coverage --cover-package=ASimpleModule_for_unit_testingPython --cover-html --cover-html-dir=/kb/module/work/test_coverage --nocapture --nologcapture .' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 0708f73f3ce5
[junit] ---> 30263341055c
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 9bfbcb2cabfa
[junit] Removing intermediate container 9bfbcb2cabfa
[junit] ---> 9c5cc45b67d8
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in 02dcf2a9c6c8
[junit] Removing intermediate container 02dcf2a9c6c8
[junit] ---> e1dbf773de54
[junit] Successfully built e1dbf773de54
[junit] Successfully tagged test/asimplemodule_for_unit_testingpython:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] 1525996120.45 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 0d75e7a6-2544-4926-8211-d91f34838d9c
[junit] 1525996120.56 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_ASimpleModule_for_unit_testingPython_1525996120408'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996121.22 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: af4f988b-a70e-4985-acbf-a939d0eb5eae
[junit] 1525996121.28 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996122.02: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525996122.66 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: ba3fe8d2-c1e5-4c82-9af4-1b562dbf3cdc
[junit] 1525996122.66 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996123.4: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996123.48: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525996123.72: uploading done into shock node: 9cfbc567-a518-4e4f-b934-23a1f9862ddc
[junit] 1525996124.09 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 4c5ce704-6a31-40b0-849e-fdb3b6baca4f
[junit] 1525996124.09 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996124.84: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996125.52 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 69154005-20d1-4a3b-99df-15117c6d6f45
[junit] 1525996125.52 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996126.23: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996128.13 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 981b2db0-a49d-4807-852d-3dc2089ee963
[junit] 1525996128.13 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (32659/1/1)
[junit] 1525996128.80 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: 2fcf9c2a-4348-4c42-847c-2924cb0f80a5
[junit] 1525996128.80 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996129.45: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996130.22 - CallbackServer: Subjob method: DataFileUtil.shock_to_file JobID: c1048fb2-b412-4923-8041-f4d57bb9679d
[junit] 1525996130.22 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996130.97: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996131.03: Fetching info for handle: KBH_252119
[junit] 1525996131.13: downloading shock node 9cfbc567-a518-4e4f-b934-23a1f9862ddc into file: /kb/module/work/tmp/TestAssembly.fa
[junit] 1525996131.2: downloading done
[junit] 1525996133.22 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 42251d4b-0564-480b-9dc7-8fbfd69ea103
[junit] 1525996133.22 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/filtered.fasta'},
[junit] u'workspace_name': u'test_ASimpleModule_for_unit_testingPython_1525996120408'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996133.95 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 44258f90-9fbf-4bfe-b220-c132cae72c0c
[junit] 1525996133.95 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996134.64: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/filtered.fasta
[junit] - parsed 2 contigs, 22bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/filtered.fasta) to SHOCK
[junit] 1525996135.36 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 4b38a818-2283-4786-a55b-eb82bb4aa9fd
[junit] 1525996135.36 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996136.15: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996136.21: uploading file /kb/module/work/tmp/filtered.fasta into shock node
[junit] 1525996136.53: uploading done into shock node: 7086ce34-8496-4388-a210-0a664292d318
[junit] 1525996136.79 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 28f4538f-3982-4a6b-b162-7fb5d7f5c21a
[junit] 1525996136.79 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996137.58: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996138.23 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 2ca702c1-9f0f-4602-ad2d-467c591031fb
[junit] 1525996138.23 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996138.97: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996140.85 - CallbackServer: Subjob method: KBaseReport.create JobID: a5776634-6953-4c39-afa4-4213e0780468
[junit] 1525996140.91 - CallbackServer: Running module KBaseReport:
[junit] url: https://github.com/kbaseapps/KBaseReport
[junit] commit: 2cd253149595332c86667495032134ba64a7a96e
[junit] version: 2.3.1
[junit] release: release
[junit]
[junit] Creating KBase Report
[junit] Report Name report_94989e0c-9a2f-208f-6e3d-d6151b8e67b1
[junit] Starting Filter Contigs function. Params=
[junit] {'assembly_input_ref': '1/fake/3',
[junit] 'min_length': '-10',
[junit] 'workspace_name': 'test_ASimpleModule_for_unit_testingPython_1525996120408'}
[junit] Validating parameters.
[junit] Starting Filter Contigs function. Params=
[junit] {'assembly_input_ref': '1/fake/3',
[junit] 'min_length': 'ten',
[junit] 'workspace_name': 'test_ASimpleModule_for_unit_testingPython_1525996120408'}
[junit] Validating parameters.
[junit] Starting Filter Contigs function. Params=
[junit] {'assembly_input_ref': u'32659/1/1',
[junit] 'min_length': 10,
[junit] 'workspace_name': 'test_ASimpleModule_for_unit_testingPython_1525996120408'}
[junit] Validating parameters.
[junit] Downloading Assembly data as a Fasta file.
[junit] Filtered Assembly to 2 contigs out of 3
[junit] Uploading filtered Assembly data.
[junit] returning:{'assembly_output': u'32659/1/2',
[junit] 'n_contigs_remaining': 2,
[junit] 'n_contigs_removed': 1,
[junit] 'n_initial_contigs': 3,
[junit] 'report_name': u'report_94989e0c-9a2f-208f-6e3d-d6151b8e67b1',
[junit] 'report_ref': u'32659/2/1'}
[junit] Test workspace was deleted
[junit] Shutting down callback server...
[junit] 1525996143.52 - CallbackServer: Shutting down executor service
[junit] Exit code: 0
[junit]
[junit] Test [testPythonModuleError]
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingPythonError directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd ASimpleModule_for_unit_testingPythonError
[junit] make (required after making changes to ASimpleModule_for_unit_testingPythonError.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit]
[junit] Validating module in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPythonError)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingPythonError/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingpythonerror:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/asimplemodule_for_unit_testingpython latest e1dbf773de54 26 seconds ago 5.22GB
[junit] test/asimplemodule_for_unit_testingperlerror latest c6d1dbc73b48 43 seconds ago 5.33GB
[junit] test/asimplemodule_for_unit_testingperl latest 1d6c9101e24f About a minute ago 5.33GB
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc 3 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 3 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 4 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 4 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 5 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 5 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 6 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 6 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 7 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 8 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.832MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> a6a1422f3323
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in 884686c9ef22
[junit] From https://github.com/kbase/jars
[junit]  fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container 884686c9ef22
[junit] ---> 715a11dce3c2
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in e03e33dffdcf
[junit] Removing intermediate container e03e33dffdcf
[junit] ---> cba2bba683a0
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 41eea3bbfb6a
[junit] Removing intermediate container 41eea3bbfb6a
[junit] ---> 1def8181319a
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container caa0fd5c2966
[junit] ---> 0f9d52b2a0eb
[junit] Step 8/10 : RUN make all
[junit] ---> Running in fb322db24738
[junit] kb-sdk compile ASimpleModule_for_unit_testingPythonError.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingPythonError::ASimpleModule_for_unit_testingPythonErrorClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingPythonError.ASimpleModule_for_unit_testingPythonErrorClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname ASimpleModule_for_unit_testingPythonError.ASimpleModule_for_unit_testingPythonErrorServer \
[junit] --pyimplname ASimpleModule_for_unit_testingPythonError.ASimpleModule_for_unit_testingPythonErrorImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> scripts/start_server.sh
[junit] echo 'uwsgi --master --processes 5 --threads 5 --http :5000 --wsgi-file $script_dir/../lib/ASimpleModule_for_unit_testingPythonError/ASimpleModule_for_unit_testingPythonErrorServer.py' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_ASimpleModule_for_unit_testingPythonError_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_ASimpleModule_for_unit_testingPythonError_async_job.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> bin/run_ASimpleModule_for_unit_testingPythonError_async_job.sh
[junit] echo 'python -u $script_dir/../lib/ASimpleModule_for_unit_testingPythonError/ASimpleModule_for_unit_testingPythonErrorServer.py $1 $2 $3' >> bin/run_ASimpleModule_for_unit_testingPythonError_async_job.sh
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingPythonError_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo 'python -m nose --with-coverage --cover-package=ASimpleModule_for_unit_testingPythonError --cover-html --cover-html-dir=/kb/module/work/test_coverage --nocapture --nologcapture .' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container fb322db24738
[junit] ---> f04d715a4fda
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in e70d0bd61aa8
[junit] Removing intermediate container e70d0bd61aa8
[junit] ---> 2a4f37d92b12
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in 5199a562086d
[junit] Removing intermediate container 5199a562086d
[junit] ---> 55f7245210df
[junit] Successfully built 55f7245210df
[junit] Successfully tagged test/asimplemodule_for_unit_testingpythonerror:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] 1525996152.74 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: ffb06334-118a-4f87-b599-5c1dd91ab4a1
[junit] 1525996152.86 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_ASimpleModule_for_unit_testingPythonError_1525996152646'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996153.53 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 7daf0b69-5464-45bf-81ad-37a664a7b332
[junit] 1525996153.60 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996154.34: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525996154.99 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 7f01bd78-af41-4259-bd58-693264444a54
[junit] 1525996154.99 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996155.75: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996155.83: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525996156.07: uploading done into shock node: 88e4e565-eb15-4917-9f8a-b2c7a7eee305
[junit] 1525996156.41 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 5dd16364-71dc-413c-a8d6-d6881cbd7a3c
[junit] 1525996156.41 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996157.18: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996157.84 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 6becc937-6922-48bf-bbfe-9332418caf00
[junit] 1525996157.84 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996158.54: Shock url: https://ci.kbase.us/services/shock-api
[junit] Test workspace was deleted
[junit] Shutting down callback server...
[junit] 1525996160.87 - CallbackServer: Shutting down executor service
[junit] Exit code: 2
[junit]
[junit] Test [testJavaModuleExample]
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingJava directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd ASimpleModule_for_unit_testingJava
[junit] make (required after making changes to ASimpleModule_for_unit_testingJava.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit]
[junit] Validating module in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingJava)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingJava/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingjava:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/asimplemodule_for_unit_testingpythonerror latest 55f7245210df 12 seconds ago 5.22GB
[junit] test/asimplemodule_for_unit_testingpython latest e1dbf773de54 44 seconds ago 5.22GB
[junit] test/asimplemodule_for_unit_testingperlerror latest c6d1dbc73b48 About a minute ago 5.33GB
[junit] test/asimplemodule_for_unit_testingperl latest 1d6c9101e24f About a minute ago 5.33GB
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc 3 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 4 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 4 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 5 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 5 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 6 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 6 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 6 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 7 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 8 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.965MB
[junit]
[junit] Step 1/11 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/11 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/11 : RUN cd /kb/deployment/lib/jars && wget https://downloads.sourceforge.net/project/jfasta/releases/jfasta-2.2.0/jfasta-2.2.0-jar-with-dependencies.jar
[junit] ---> Using cache
[junit] ---> 3fa51fc1d950
[junit] Step 4/11 : COPY ./ /kb/module
[junit] ---> c15c57d5d7df
[junit] Step 5/11 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in 742191b0d3b9
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,896 bytes received 306 bytes 4,104,404.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container 742191b0d3b9
[junit] ---> 347060206547
[junit] Step 6/11 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 0c99e24d253b
[junit] Removing intermediate container 0c99e24d253b
[junit] ---> 722ad2a38d2f
[junit] Step 7/11 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 3fb1bbb0dcd2
[junit] Removing intermediate container 3fb1bbb0dcd2
[junit] ---> 239165d2b7d7
[junit] Step 8/11 : WORKDIR /kb/module
[junit] Removing intermediate container 3729e98ecb85
[junit] ---> 5e262af5ed95
[junit] Step 9/11 : RUN make all
[junit] ---> Running in 379f41d36f32
[junit] kb-sdk compile ASimpleModule_for_unit_testingJava.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingJava::ASimpleModule_for_unit_testingJavaClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingJava.ASimpleModule_for_unit_testingJavaClient \
[junit] --javasrc src \
[junit] --java \
[junit] --javasrv \
[junit] --javapackage .;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] /kb/runtime/ant/bin/ant war -Djars.dir=/kb/deployment/lib/jars
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] compile:
[junit] [mkdir] Created dir: /kb/module/classes
[junit] [mkdir] Created dir: /kb/module/dist
[junit]  [exec] Result: 1
[junit]  [exec] Result: 128
[junit]  [exec] Result: 128
[junit]  [javac] Compiling 77 source files to /kb/module/classes
[junit] [copy] Copying 79 files to /kb/module/classes
[junit] [jar] Building jar: /kb/module/dist/ASimpleModuleForUnitTestingJava.jar
[junit] [delete] Deleting directory /kb/module/classes
[junit]
[junit] war:
[junit] [mkdir] Created dir: /kb/module/dist/lib
[junit] [copy] Copying 18 files to /kb/module/dist/lib
[junit] [war] Building war: /kb/module/dist/ASimpleModuleForUnitTestingJava.war
[junit] [delete] Deleting directory /kb/module/dist/lib
[junit] [mkdir] Created dir: /kb/module/scripts/webapps
[junit] [copy] Copying 1 file to /kb/module/scripts/webapps
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 2 seconds
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'cd scripts' >> scripts/start_server.sh
[junit] echo 'java -cp /kb/deployment/lib/jars/jetty/jetty-start-7.0.0.jar:/kb/deployment/lib/jars/jetty/jetty-all-7.0.0.jar:/kb/deployment/lib/jars/servlet/servlet-api-2.5.jar \
[junit] -DKB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg -Djetty.port=5000 org.eclipse.jetty.start.Main jetty.xml' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] /kb/runtime/ant/bin/ant build-executable-script -Djars.dir=/kb/deployment/lib/jars -Dexec.cmd.file=run_ASimpleModule_for_unit_testingJava_async_job.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] build-executable-script:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingJava_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export JAVA_HOME=/usr/lib/jvm/java-7-oracle/' >> test/run_tests.sh
[junit] echo '/kb/runtime/ant/bin/ant test -Djars.dir=/kb/deployment/lib/jars' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 379f41d36f32
[junit] ---> 240464f22607
[junit] Step 10/11 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 37bfd8b09e0e
[junit] Removing intermediate container 37bfd8b09e0e
[junit] ---> f07f9dc9ecd0
[junit] Step 11/11 : CMD [ ]
[junit] ---> Running in 0b6a9ba1a5a2
[junit] Removing intermediate container 0b6a9ba1a5a2
[junit] ---> 668b6b147dba
[junit] Successfully built 668b6b147dba
[junit] Successfully tagged test/asimplemodule_for_unit_testingjava:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] test:
[junit] [junit] Running asimplemoduleforunittestingjava.test.ASimpleModuleForUnitTestingJavaServerTest
[junit] [junit] Testsuite: asimplemoduleforunittestingjava.test.ASimpleModuleForUnitTestingJavaServerTest
[junit] 1525996175.01 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: c7d0949b-6229-4573-9783-baa6bf9ffc6e
[junit] 1525996175.13 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_ASimpleModuleForUnitTestingJava_1525996174846'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996175.84 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: a443a3ce-8d17-4551-9d7b-9427e0f92ca6
[junit] 1525996175.90 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996176.69: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525996177.29 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 1a0f1922-f36b-4525-89aa-ebe8b4e73917
[junit] 1525996177.29 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996178.05: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996178.12: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525996178.38: uploading done into shock node: 8978cb4e-0855-4025-a05a-c21fa203bb7f
[junit] 1525996178.70 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: 616fd5dc-c541-46f7-bdbf-f65bd511e59d
[junit] 1525996178.70 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996179.43: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996180.12 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 4994c741-865d-4922-b1fe-1130114796eb
[junit] 1525996180.12 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996180.81: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996182.68 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 6dc42cfe-e5a8-4144-9568-70bbdd5b19e6
[junit] 1525996182.68 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (32661/1/1)
[junit] 1525996183.40 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: 5b27d876-bf20-4493-8a76-b8c76c8d62da
[junit] 1525996183.40 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996184.08: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996184.81 - CallbackServer: Subjob method: DataFileUtil.shock_to_file JobID: 20f56b5c-1f4d-4791-abb2-1ba35c8cc010
[junit] 1525996184.81 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996185.57: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996185.64: Fetching info for handle: KBH_252123
[junit] 1525996185.77: downloading shock node 8978cb4e-0855-4025-a05a-c21fa203bb7f into file: /kb/module/work/tmp/TestAssembly.fa
[junit] 1525996185.81: downloading done
[junit] 1525996187.71 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: d9592193-de0d-40a3-84e4-a63495a1894d
[junit] 1525996187.71 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/filtered.fasta'},
[junit] u'workspace_name': u'test_ASimpleModuleForUnitTestingJava_1525996174846'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996188.37 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: 089193ae-47e6-4681-84df-5a8de5c9d754
[junit] 1525996188.37 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996189.11: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/filtered.fasta
[junit] - parsed 2 contigs, 22bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/filtered.fasta) to SHOCK
[junit] 1525996189.79 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: 6d599755-e257-4af6-921d-253a427abcab
[junit] 1525996189.79 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996190.5: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996190.57: uploading file /kb/module/work/tmp/filtered.fasta into shock node
[junit] 1525996190.94: uploading done into shock node: 615dc797-773a-494c-a7cd-5c4fec08525b
[junit] 1525996191.21 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: ed8b8aa4-3d09-45ff-b3e1-8e1d591daea1
[junit] 1525996191.21 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996191.97: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996192.64 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: 28894553-b661-4a5c-85ae-5049655ef3d6
[junit] 1525996192.64 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996193.37: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996195.30 - CallbackServer: Subjob method: KBaseReport.create JobID: 66e8f406-8452-4a2e-8fee-f45d0d012956
[junit] 1525996195.36 - CallbackServer: Running module KBaseReport:
[junit] url: https://github.com/kbaseapps/KBaseReport
[junit] commit: 2cd253149595332c86667495032134ba64a7a96e
[junit] version: 2.3.1
[junit] release: release
[junit]
[junit] Creating KBase Report
[junit] Report Name report_4b366fb4-a4cb-caa8-3dc5-55655ee1cc1c
[junit] 1525996197.50 - CallbackServer: Subjob method: AssemblyUtil.get_assembly_as_fasta JobID: 93b76ca6-5e83-4905-9ae6-234eed2bec9c
[junit] 1525996197.50 - CallbackServer: WARNING: Module AssemblyUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] downloading ws object data (fake)
[junit] 1525996198.22 - CallbackServer: Subjob method: DataFileUtil.get_objects JobID: 7d6f3ecd-968e-4d40-aebc-3730f110338c
[junit] 1525996198.22 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996198.92: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996199.05: Logging workspace error on get_objects: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] at java.lang.reflect.Method.invoke(Method.java:498)
[junit] at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] at java.lang.Thread.run(Thread.java:748)
[junit] Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] ... 36 more
[junit]
[junit] [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 26.974 sec
[junit] [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 26.974 sec
[junit] [junit] ------------- Standard Output ---------------
[junit] [junit] Got SDK_CALLBACK_URL http://172.17.0.1:44933
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=32661/1/1, workspaceName=test_ASimpleModuleForUnitTestingJava_1525996174846, minLength=10, additionalProperties={}]
[junit] [junit] Downloading assembly data as FASTA file.
[junit] [junit] Filtered assembly to 2 contigs out of 3
[junit] [junit] returning:
[junit] [junit] FilterContigsResults [reportName=report_4b366fb4-a4cb-caa8-3dc5-55655ee1cc1c, reportRef=32661/2/1, assemblyOutput=32661/1/2, nInitialContigs=3, nContigsRemoved=1, nContigsRemaining=2, additionalProperties={}]
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=fake/fake/1, workspaceName=test_ASimpleModuleForUnitTestingJava_1525996174846, minLength=null, additionalProperties={}]
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=fake/fake/1, workspaceName=test_ASimpleModuleForUnitTestingJava_1525996174846, minLength=-10, additionalProperties={}]
[junit] [junit] Starting filter contigs. Parameters:
[junit] [junit] FilterContigsParams [assemblyInputRef=fake, workspaceName=test_ASimpleModuleForUnitTestingJava_1525996174846, minLength=10, additionalProperties={}]
[junit] [junit] Downloading assembly data as FASTA file.
[junit] [junit] Test workspace was deleted
[junit] [junit] ------------- ---------------- ---------------
[junit] [junit]
[junit] [junit] Testcase: testFilterContigsOk took 22.659 sec
[junit] [junit] Testcase: test_filter_contigs_err1 took 0 sec
[junit] [junit] Testcase: test_filter_contigs_err2 took 0 sec
[junit] [junit] Testcase: test_filter_contigs_err3 took 3.308 sec
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 27 seconds
[junit] Shutting down callback server...
[junit] 1525996201.20 - CallbackServer: Shutting down executor service
[junit] Exit code: 0
[junit]
[junit] Test [testJavaModuleError]
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingJavaError directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd ASimpleModule_for_unit_testingJavaError
[junit] make (required after making changes to ASimpleModule_for_unit_testingJavaError.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit]
[junit] Validating module in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingJavaError)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingJavaError/ui/narrative/methods/filter_contigs)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingjavaerror:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/asimplemodule_for_unit_testingjava latest 668b6b147dba 31 seconds ago 5.23GB
[junit] test/asimplemodule_for_unit_testingpythonerror latest 55f7245210df 52 seconds ago 5.22GB
[junit] test/asimplemodule_for_unit_testingpython latest e1dbf773de54 About a minute ago 5.22GB
[junit] test/asimplemodule_for_unit_testingperlerror latest c6d1dbc73b48 About a minute ago 5.33GB
[junit] test/asimplemodule_for_unit_testingperl latest 1d6c9101e24f 2 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc 4 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 4 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 5 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 5 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 6 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 6 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 7 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 7 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 8 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 9 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.966MB
[junit]
[junit] Step 1/11 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/11 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/11 : RUN cd /kb/deployment/lib/jars && wget https://downloads.sourceforge.net/project/jfasta/releases/jfasta-2.2.0/jfasta-2.2.0-jar-with-dependencies.jar
[junit] ---> Using cache
[junit] ---> 3fa51fc1d950
[junit] Step 4/11 : COPY ./ /kb/module
[junit] ---> 6e856d52468d
[junit] Step 5/11 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in fe6a549e09fb
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,896 bytes received 306 bytes 4,104,404.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container fe6a549e09fb
[junit] ---> 0e92f0a60543
[junit] Step 6/11 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 4760d0e01295
[junit] Removing intermediate container 4760d0e01295
[junit] ---> 3c2cf8afd902
[junit] Step 7/11 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in e38df64a38f6
[junit] Removing intermediate container e38df64a38f6
[junit] ---> 302b1801a27a
[junit] Step 8/11 : WORKDIR /kb/module
[junit] Removing intermediate container f8b914d9541a
[junit] ---> 313b56a73fc0
[junit] Step 9/11 : RUN make all
[junit] ---> Running in 194e369d1893
[junit] kb-sdk compile ASimpleModule_for_unit_testingJavaError.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingJavaError::ASimpleModule_for_unit_testingJavaErrorClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingJavaError.ASimpleModule_for_unit_testingJavaErrorClient \
[junit] --javasrc src \
[junit] --java \
[junit] --javasrv \
[junit] --javapackage .;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] /kb/runtime/ant/bin/ant war -Djars.dir=/kb/deployment/lib/jars
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] compile:
[junit] [mkdir] Created dir: /kb/module/classes
[junit] [mkdir] Created dir: /kb/module/dist
[junit]  [exec] Result: 1
[junit]  [exec] Result: 128
[junit]  [exec] Result: 128
[junit]  [javac] Compiling 77 source files to /kb/module/classes
[junit] [copy] Copying 79 files to /kb/module/classes
[junit] [jar] Building jar: /kb/module/dist/ASimpleModuleForUnitTestingJavaError.jar
[junit] [delete] Deleting directory /kb/module/classes
[junit]
[junit] war:
[junit] [mkdir] Created dir: /kb/module/dist/lib
[junit] [copy] Copying 18 files to /kb/module/dist/lib
[junit] [war] Building war: /kb/module/dist/ASimpleModuleForUnitTestingJavaError.war
[junit] [delete] Deleting directory /kb/module/dist/lib
[junit] [mkdir] Created dir: /kb/module/scripts/webapps
[junit] [copy] Copying 1 file to /kb/module/scripts/webapps
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 2 seconds
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'cd scripts' >> scripts/start_server.sh
[junit] echo 'java -cp /kb/deployment/lib/jars/jetty/jetty-start-7.0.0.jar:/kb/deployment/lib/jars/jetty/jetty-all-7.0.0.jar:/kb/deployment/lib/jars/servlet/servlet-api-2.5.jar \
[junit] -DKB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg -Djetty.port=5000 org.eclipse.jetty.start.Main jetty.xml' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] /kb/runtime/ant/bin/ant build-executable-script -Djars.dir=/kb/deployment/lib/jars -Dexec.cmd.file=run_ASimpleModule_for_unit_testingJavaError_async_job.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] build-executable-script:
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingJavaError_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export JAVA_HOME=/usr/lib/jvm/java-7-oracle/' >> test/run_tests.sh
[junit] echo '/kb/runtime/ant/bin/ant test -Djars.dir=/kb/deployment/lib/jars' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 194e369d1893
[junit] ---> 30792e9be687
[junit] Step 10/11 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 69fcb16af882
[junit] Removing intermediate container 69fcb16af882
[junit] ---> ed0ea44f1a68
[junit] Step 11/11 : CMD [ ]
[junit] ---> Running in 19ba17f5ecc6
[junit] Removing intermediate container 19ba17f5ecc6
[junit] ---> 681fb234ab6d
[junit] Successfully built 681fb234ab6d
[junit] Successfully tagged test/asimplemodule_for_unit_testingjavaerror:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] Buildfile: /kb/module/build.xml
[junit]
[junit] test:
[junit] [junit] Running asimplemoduleforunittestingjavaerror.test.ASimpleModuleForUnitTestingJavaErrorServerTest
[junit] [junit] Testsuite: asimplemoduleforunittestingjavaerror.test.ASimpleModuleForUnitTestingJavaErrorServerTest
[junit] 1525996214.84 - CallbackServer: Subjob method: AssemblyUtil.save_assembly_from_fasta JobID: 51abfcd2-5bfa-453d-82c0-54a43596aa4a
[junit] 1525996214.97 - CallbackServer: Running module AssemblyUtil:
[junit] url: https://github.com/kbaseapps/AssemblyUtil
[junit] commit: 2b9b53d852190c94996e620d4754ca6aa98c0cb4
[junit] version: 1.0.6
[junit] release: release
[junit]
[junit] save_assembly_from_fasta -- paramaters =
[junit] {u'assembly_name': u'TestAssembly',
[junit] u'file': {u'path': u'/kb/module/work/tmp/test1.fasta'},
[junit] u'workspace_name': u'test_ASimpleModuleForUnitTestingJavaError_1525996214683'}
[junit] validating parameters
[junit] staging input files
[junit] 1525996215.71 - CallbackServer: Subjob method: DataFileUtil.unpack_file JobID: b792be63-cf91-40cc-b0d9-80252eb11268
[junit] 1525996215.78 - CallbackServer: Running module DataFileUtil:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996216.56: Shock url: https://ci.kbase.us/services/shock-api
[junit] parsing FASTA file: /kb/module/work/tmp/test1.fasta
[junit] - parsed 3 contigs, 27bp
[junit] saving assembly to KBase
[junit] Uploading fasta file (/kb/module/work/tmp/test1.fasta) to SHOCK
[junit] 1525996217.14 - CallbackServer: Subjob method: DataFileUtil.file_to_shock JobID: a2a18318-fc6e-4d8b-b140-efa6c145f90f
[junit] 1525996217.14 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996217.89: Shock url: https://ci.kbase.us/services/shock-api
[junit] 1525996217.98: uploading file /kb/module/work/tmp/test1.fasta into shock node
[junit] 1525996218.25: uploading done into shock node: 546a0d90-c696-4e8b-ba23-8415aec442f6
[junit] 1525996218.57 - CallbackServer: Subjob method: DataFileUtil.ws_name_to_id JobID: d980850c-0905-4d79-85d0-6bf6d79003d9
[junit] 1525996218.57 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996219.36: Shock url: https://ci.kbase.us/services/shock-api
[junit] Saving Assembly to Workspace
[junit] 1525996219.99 - CallbackServer: Subjob method: DataFileUtil.save_objects JobID: cac28934-e21c-45a3-93b0-34b85568d446
[junit] 1525996219.99 - CallbackServer: WARNING: Module DataFileUtil was already used once for this job. Using cached version:
[junit] url: https://github.com/kbaseapps/DataFileUtil
[junit] commit: c4733f9c81bcc8228c63ceeb2c0540df9e61153e
[junit] version: 0.0.21
[junit] release: release
[junit]
[junit] 1525996220.69: Shock url: https://ci.kbase.us/services/shock-api
[junit] [junit] Tests run: 4, Failures: 0, Errors: 4, Skipped: 0, Time elapsed: 8.809 sec
[junit] [junit] Tests run: 4, Failures: 0, Errors: 4, Skipped: 0, Time elapsed: 8.809 sec
[junit] [junit] ------------- Standard Output ---------------
[junit] [junit] Got SDK_CALLBACK_URL http://172.17.0.1:44921
[junit] [junit] Test workspace was deleted
[junit] [junit] ------------- ---------------- ---------------
[junit] [junit]
[junit] [junit] Testcase: testFilterContigsOk took 7.86 sec
[junit] [junit] Caused an ERROR
[junit] [junit] Special error
[junit] [junit] java.lang.IllegalStateException: Special error
[junit] [junit] at asimplemoduleforunittestingjavaerror.ASimpleModuleForUnitTestingJavaErrorServer.filterContigs(ASimpleModuleForUnitTestingJavaErrorServer.java:82)
[junit] [junit] at asimplemoduleforunittestingjavaerror.test.ASimpleModuleForUnitTestingJavaErrorServerTest.testFilterContigsOk(ASimpleModuleForUnitTestingJavaErrorServerTest.java:131)
[junit] [junit]
[junit] [junit] Testcase: test_filter_contigs_err1 took 0.001 sec
[junit] [junit] Caused an ERROR
[junit] [junit] Special error
[junit] [junit] java.lang.IllegalStateException: Special error
[junit] [junit] at asimplemoduleforunittestingjavaerror.ASimpleModuleForUnitTestingJavaErrorServer.filterContigs(ASimpleModuleForUnitTestingJavaErrorServer.java:82)
[junit] [junit] at asimplemoduleforunittestingjavaerror.test.ASimpleModuleForUnitTestingJavaErrorServerTest.test_filter_contigs_err1(ASimpleModuleForUnitTestingJavaErrorServerTest.java:146)
[junit] [junit]
[junit] [junit] Testcase: test_filter_contigs_err2 took 0.001 sec
[junit] [junit] Caused an ERROR
[junit] [junit] Special error
[junit] [junit] java.lang.IllegalStateException: Special error
[junit] [junit] at asimplemoduleforunittestingjavaerror.ASimpleModuleForUnitTestingJavaErrorServer.filterContigs(ASimpleModuleForUnitTestingJavaErrorServer.java:82)
[junit] [junit] at asimplemoduleforunittestingjavaerror.test.ASimpleModuleForUnitTestingJavaErrorServerTest.test_filter_contigs_err2(ASimpleModuleForUnitTestingJavaErrorServerTest.java:158)
[junit] [junit]
[junit] [junit] Testcase: test_filter_contigs_err3 took 0.001 sec
[junit] [junit] Caused an ERROR
[junit] [junit] Special error
[junit] [junit] java.lang.IllegalStateException: Special error
[junit] [junit] at asimplemoduleforunittestingjavaerror.ASimpleModuleForUnitTestingJavaErrorServer.filterContigs(ASimpleModuleForUnitTestingJavaErrorServer.java:82)
[junit] [junit] at asimplemoduleforunittestingjavaerror.test.ASimpleModuleForUnitTestingJavaErrorServerTest.test_filter_contigs_err3(ASimpleModuleForUnitTestingJavaErrorServerTest.java:169)
[junit] [junit]
[junit] Shutting down callback server...
[junit] 1525996222.96 - CallbackServer: Shutting down executor service
[junit] Exit code: 2
[junit]
[junit] Test [testRModuleError]
[junit] ************************************************************************
[junit] WARNING: R support is deprecated and will be removed in a future release
[junit] ************************************************************************
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingRError directory.
[junit] Compile and run the example methods with the following inputs:
[junit] cd ASimpleModule_for_unit_testingRError
[junit] make (required after making changes to ASimpleModule_for_unit_testingRError.spec)
[junit] kb-sdk test (will require setting test user account credentials in test_local/test.cfg)
[junit]
[junit] ************************************************************************
[junit] WARNING: R support is deprecated and will be removed in a future release
[junit] ************************************************************************
[junit]
[junit] Validating module in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingRError)
[junit]
[junit] Validating method in (/vagrant/kb_sdk/ASimpleModule_for_unit_testingRError/ui/narrative/methods/count_contigs_in_set)
[junit]
[junit]
[junit] Congrats- this module is valid.
[junit]
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingrerror:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/asimplemodule_for_unit_testingjavaerror latest 681fb234ab6d 12 seconds ago 5.23GB
[junit] test/asimplemodule_for_unit_testingjava latest 668b6b147dba 52 seconds ago 5.23GB
[junit] test/asimplemodule_for_unit_testingpythonerror latest 55f7245210df About a minute ago 5.22GB
[junit] test/asimplemodule_for_unit_testingpython latest e1dbf773de54 About a minute ago 5.22GB
[junit] test/asimplemodule_for_unit_testingperlerror latest c6d1dbc73b48 2 minutes ago 5.33GB
[junit] test/asimplemodule_for_unit_testingperl latest 1d6c9101e24f 2 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc 4 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 5 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 5 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 6 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 6 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 7 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 7 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 7 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 8 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 9 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.408MB
[junit]
[junit] Step 1/15 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/15 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/15 : ENV R_LIBS=/kb/deployment/lib
[junit] ---> Running in 36255cff1e9c
[junit] Removing intermediate container 36255cff1e9c
[junit] ---> 754df88103ab
[junit] Step 4/15 : RUN R -q -e 'if(!require(jsonlite)) install.packages("jsonlite", repos="http://cran.us.r-project.org")'
[junit] ---> Running in 69c76ad20124
[junit] > if(!require(jsonlite)) install.packages("jsonlite", repos="http://cran.us.r-project.org")
[junit] Loading required package: jsonlite
[junit] Installing package into '/kb/deployment/lib'
[junit] (as 'lib' is unspecified)
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/jsonlite_1.5.tar.gz'
[junit] Content type 'application/x-gzip' length 1096810 bytes (1.0 Mb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 1.0 Mb
[junit]
[junit] * installing *source* package 'jsonlite' ...
[junit] ** package 'jsonlite' successfully unpacked and MD5 sums checked
[junit] ** libs
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c base64.c -o base64.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c collapse_array.c -o collapse_array.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c collapse_object.c -o collapse_object.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c collapse_pretty.c -o collapse_pretty.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c escape_chars.c -o escape_chars.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c integer64_to_na.c -o integer64_to_na.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c is_datelist.c -o is_datelist.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c is_recordlist.c -o is_recordlist.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c is_scalarlist.c -o is_scalarlist.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c modp_numtoa.c -o modp_numtoa.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c null_to_na.c -o null_to_na.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c num_to_char.c -o num_to_char.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c parse.c -o parse.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c prettify.c -o prettify.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c push_parser.c -o push_parser.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c r-base64.c -o r-base64.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c register.c -o register.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c row_collapse.c -o row_collapse.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c transpose_list.c -o transpose_list.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c validate.c -o validate.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl.c -o yajl/yajl.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o
[junit] ar rcs libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
[junit] gcc -std=gnu99 -shared -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -L. -lstatyajl -L/usr/lib/R/lib -lR
[junit] installing to /kb/deployment/lib/jsonlite/libs
[junit] ** R
[junit] ** inst
[junit] ** preparing package for lazy loading
[junit] ** help
[junit] *** installing help indices
[junit] ** building package indices
[junit] ** installing vignettes
[junit] ** testing if installed package can be loaded
[junit] * DONE (jsonlite)
[junit] 
[junit] The downloaded source packages are in
[junit] '/tmp/RtmpX2D00u/downloaded_packages'
[junit] >
[junit] Warning message:
[junit] In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
[junit] there is no package called 'jsonlite'
[junit] >
[junit] Removing intermediate container 69c76ad20124
[junit] ---> 439d802eb229
[junit] Step 5/15 : RUN R -q -e 'if(!require(httr)) install.packages("httr", repos="http://cran.us.r-project.org")'
[junit] ---> Running in 9c727fa3eef5
[junit] > if(!require(httr)) install.packages("httr", repos="http://cran.us.r-project.org")
[junit] Loading required package: httr
[junit] Installing package into '/kb/deployment/lib'
[junit] (as 'lib' is unspecified)
[junit] also installing the dependencies 'mime', 'curl', 'openssl', 'R6'
[junit]
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/mime_0.5.tar.gz'
[junit] Content type 'application/x-gzip' length 12634 bytes (12 Kb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 12 Kb
[junit]
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/curl_3.2.tar.gz'
[junit] Content type 'application/x-gzip' length 367047 bytes (358 Kb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 358 Kb
[junit]
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/openssl_1.0.1.tar.gz'
[junit] Content type 'application/x-gzip' length 1194261 bytes (1.1 Mb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 1.1 Mb
[junit]
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/R6_2.2.2.tar.gz'
[junit] Content type 'application/x-gzip' length 322959 bytes (315 Kb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 315 Kb
[junit]
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/httr_1.3.1.tar.gz'
[junit] Content type 'application/x-gzip' length 147593 bytes (144 Kb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 144 Kb
[junit]
[junit] * installing *source* package 'mime' ...
[junit] ** package 'mime' successfully unpacked and MD5 sums checked
[junit] ** libs
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c rawmatch.c -o rawmatch.o
[junit] gcc -std=gnu99 -shared -o mime.so rawmatch.o -L/usr/lib/R/lib -lR
[junit] installing to /kb/deployment/lib/mime/libs
[junit] ** R
[junit] ** preparing package for lazy loading
[junit] ** help
[junit] *** installing help indices
[junit] ** building package indices
[junit] ** testing if installed package can be loaded
[junit] * DONE (mime)
[junit] * installing *source* package 'curl' ...
[junit] ** package 'curl' successfully unpacked and MD5 sums checked
[junit] Found pkg-config cflags and libs!
[junit] Using PKG_CFLAGS=
[junit] Using PKG_LIBS=-lcurl
[junit] ** libs
[junit] rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o utils.o version.o winidn.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c callbacks.c -o callbacks.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c curl.c -o curl.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c download.c -o download.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c escape.c -o escape.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c fetch.c -o fetch.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c form.c -o form.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c getdate.c -o getdate.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c handle.c -o handle.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c ieproxy.c -o ieproxy.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c init.c -o init.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c interrupt.c -o interrupt.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c multi.c -o multi.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c nslookup.c -o nslookup.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c reflist.c -o reflist.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c split.c -o split.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c ssl.c -o ssl.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c utils.c -o utils.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c version.c -o version.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c winidn.c -o winidn.o
[junit] gcc -std=gnu99 -shared -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o utils.o version.o winidn.o -lcurl -L/usr/lib/R/lib -lR
[junit] installing to /kb/deployment/lib/curl/libs
[junit] ** R
[junit] ** data
[junit] *** moving datasets to lazyload DB
[junit] ** inst
[junit] ** preparing package for lazy loading
[junit] ** help
[junit] *** installing help indices
[junit] ** building package indices
[junit] ** installing vignettes
[junit] ** testing if installed package can be loaded
[junit] * DONE (curl)
[junit] * installing *source* package 'openssl' ...
[junit] ** package 'openssl' successfully unpacked and MD5 sums checked
[junit] Found pkg-config cflags and libs!
[junit] Using PKG_CFLAGS=
[junit] Using PKG_LIBS=-l:libssl.so.1.0.0 -l:libcrypto.so.1.0.0
[junit] ** libs
[junit] rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o openssl.so
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c aes.c -o aes.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c base64.c -o base64.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c bignum.c -o bignum.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c cert.c -o cert.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c compatibility.c -o compatibility.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c diffie.c -o diffie.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c envelope.c -o envelope.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c error.c -o error.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c hash.c -o hash.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c info.c -o info.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c keygen.c -o keygen.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c keys.c -o keys.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c onload.c -o onload.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c openssh.c -o openssh.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c password.c -o password.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pem.c -o pem.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pkcs12.c -o pkcs12.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pkcs7.c -o pkcs7.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c rand.c -o rand.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c rsa.c -o rsa.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c signing.c -o signing.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c ssl.c -o ssl.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c stream.c -o stream.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c write.c -o write.o
[junit] gcc -std=gnu99 -shared -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o -l:libssl.so.1.0.0 -l:libcrypto.so.1.0.0 -L/usr/lib/R/lib -lR
[junit] installing to /kb/deployment/lib/openssl/libs
[junit] ** R
[junit] ** inst
[junit] ** preparing package for lazy loading
[junit] ** help
[junit] *** installing help indices
[junit] ** building package indices
[junit] ** installing vignettes
[junit] ** testing if installed package can be loaded
[junit] * DONE (openssl)
[junit] * installing *source* package 'R6' ...
[junit] ** package 'R6' successfully unpacked and MD5 sums checked
[junit] ** R
[junit] ** inst
[junit] ** preparing package for lazy loading
[junit] ** help
[junit] *** installing help indices
[junit] ** building package indices
[junit] ** installing vignettes
[junit] ** testing if installed package can be loaded
[junit] * DONE (R6)
[junit] * installing *source* package 'httr' ...
[junit] ** package 'httr' successfully unpacked and MD5 sums checked
[junit] ** R
[junit] ** demo
[junit] ** inst
[junit] ** preparing package for lazy loading
[junit] ** help
[junit] *** installing help indices
[junit] ** building package indices
[junit] ** installing vignettes
[junit] ** testing if installed package can be loaded
[junit] * DONE (httr)
[junit] 
[junit] The downloaded source packages are in
[junit] '/tmp/Rtmpr24fM6/downloaded_packages'
[junit] Warning message:
[junit] In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
[junit] there is no package called 'httr'
[junit] >
[junit] >
[junit] Removing intermediate container 9c727fa3eef5
[junit] ---> 240d3d6b2fb3
[junit] Step 6/15 : RUN R -q -e 'if(!require(raster)) install.packages("raster", repos="http://cran.us.r-project.org")'
[junit] ---> Running in 82b0e0c754c1
[junit] > if(!require(raster)) install.packages("raster", repos="http://cran.us.r-project.org")
[junit] Loading required package: raster
[junit] Installing package into '/kb/deployment/lib'
[junit] (as 'lib' is unspecified)
[junit] also installing the dependency 'sp'
[junit]
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/sp_1.2-7.tar.gz'
[junit] Content type 'application/x-gzip' length 1133397 bytes (1.1 Mb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 1.1 Mb
[junit]
[junit] trying URL 'http://cran.us.r-project.org/src/contrib/raster_2.6-7.tar.gz'
[junit] Content type 'application/x-gzip' length 1080946 bytes (1.0 Mb)
[junit] opened URL
[junit] ==================================================
[junit] downloaded 1.0 Mb
[junit]
[junit] * installing *source* package 'sp' ...
[junit] ** package 'sp' successfully unpacked and MD5 sums checked
[junit] ** libs
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c Rcentroid.c -o Rcentroid.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c gcdist.c -o gcdist.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c init.c -o init.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pip.c -o pip.o
[junit] pip.c: In function 'R_point_in_polygon_sp':
[junit] pip.c:13:2: warning: implicit declaration of function 'MAYBE_REFERENCED' [-Wimplicit-function-declaration]
[junit] if (MAYBE_REFERENCED(px)) {
[junit] ^
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pip2.c -o pip2.o
[junit] pip2.c: In function 'pointsInBox':
[junit] pip2.c:58:2: warning: implicit declaration of function 'MAYBE_REFERENCED' [-Wimplicit-function-declaration]
[junit] if (MAYBE_REFERENCED(px)) {
[junit] ^
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c sp_xports.c -o sp_xports.o
[junit] sp_xports.c: In function 'Polygon_c':
[junit] sp_xports.c:49:3: warning: implicit declaration of function 'MAYBE_REFERENCED' [-Wimplicit-function-declaration]
[junit] if (MAYBE_REFERENCED(coords)) {
[junit] ^
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c surfaceArea.c -o surfaceArea.o
[junit] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c zerodist.c -o zerodist.o
[junit] gcc -std=gnu99 -shared -o sp.so Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -L/usr/lib/R/lib -lR
[junit] installing to /kb/deployment/lib/sp/libs
[junit] ** R
[junit] ** data
[junit] ** demo
[junit] ** inst
[junit] ** preparing package for lazy loading
[junit] ** help
[junit] *** installing help indices
[junit] ** building package indices
[junit] ** installing vignettes
[junit] ** testing if installed package can be loaded
[junit] Error in dyn.load(file, DLLpath = DLLpath, ...) :
[junit] unable to load shared object '/kb/deployment/lib/sp/libs/sp.so':
[junit] /kb/deployment/lib/sp/libs/sp.so: undefined symbol: MAYBE_REFERENCED
[junit] Error: loading failed
[junit] Execution halted
[junit] ERROR: loading failed
[junit] * removing '/kb/deployment/lib/sp'
[junit] ERROR: dependency 'sp' is not available for package 'raster'
[junit] * removing '/kb/deployment/lib/raster'
[junit] Warning messages:
[junit] 1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
[junit] there is no package called 'raster'
[junit] 
[junit] The downloaded source packages are in
[junit] '/tmp/RtmpcRmz3q/downloaded_packages'
[junit] >
[junit] 2: In install.packages("raster", repos = "http://cran.us.r-project.org") :
[junit] installation of package 'sp' had non-zero exit status
[junit] 3: In install.packages("raster", repos = "http://cran.us.r-project.org") :
[junit] installation of package 'raster' had non-zero exit status
[junit] >
[junit] Removing intermediate container 82b0e0c754c1
[junit] ---> c336da236b61
[junit] Step 7/15 : RUN apt-get -y install r-cran-evaluate r-cran-codetools r-cran-testthat
[junit] ---> Running in 17d01b5bff93
[junit] Reading package lists...
[junit] Building dependency tree...
[junit] Reading state information...
[junit] r-cran-codetools is already the newest version.
[junit] r-cran-codetools set to manually installed.
[junit] The following extra packages will be installed:
[junit] r-cran-digest r-cran-plyr r-cran-stringr
[junit] The following NEW packages will be installed:
[junit] r-cran-digest r-cran-evaluate r-cran-plyr r-cran-stringr r-cran-testthat
[junit] 0 upgraded, 5 newly installed, 0 to remove and 280 not upgraded.
[junit] Need to get 1083 kB of archives.
[junit] After this operation, 1619 kB of additional disk space will be used.
[junit] Get:1 http://archive.ubuntu.com/ubuntu/ trusty/universe r-cran-digest amd64 0.6.4-1 [81.6 kB]
[junit] Get:2 http://archive.ubuntu.com/ubuntu/ trusty/universe r-cran-plyr amd64 1.8-1build1 [729 kB]
[junit] Get:3 http://archive.ubuntu.com/ubuntu/ trusty/universe r-cran-stringr all 0.6.2-1 [73.2 kB]
[junit] Get:4 http://archive.ubuntu.com/ubuntu/ trusty/universe r-cran-evaluate all 0.5.1-1 [43.8 kB]
[junit] Get:5 http://archive.ubuntu.com/ubuntu/ trusty/universe r-cran-testthat all 0.7.1-1 [156 kB]
[junit] debconf: unable to initialize frontend: Dialog
[junit] debconf: (TERM is not set, so the dialog frontend is not usable.)
[junit] debconf: falling back to frontend: Readline
[junit] debconf: unable to initialize frontend: Readline
[junit] debconf: (This frontend requires a controlling tty.)
[junit] debconf: falling back to frontend: Teletype
[junit] dpkg-preconfigure: unable to re-open stdin:
[junit] Fetched 1083 kB in 1s (601 kB/s)
[junit] Selecting previously unselected package r-cran-digest.
[junit] (Reading database ... 77429 files and directories currently installed.)
[junit] Preparing to unpack .../r-cran-digest_0.6.4-1_amd64.deb ...
[junit] Unpacking r-cran-digest (0.6.4-1) ...
[junit] Selecting previously unselected package r-cran-plyr.
[junit] Preparing to unpack .../r-cran-plyr_1.8-1build1_amd64.deb ...
[junit] Unpacking r-cran-plyr (1.8-1build1) ...
[junit] Selecting previously unselected package r-cran-stringr.
[junit] Preparing to unpack .../r-cran-stringr_0.6.2-1_all.deb ...
[junit] Unpacking r-cran-stringr (0.6.2-1) ...
[junit] Selecting previously unselected package r-cran-evaluate.
[junit] Preparing to unpack .../r-cran-evaluate_0.5.1-1_all.deb ...
[junit] Unpacking r-cran-evaluate (0.5.1-1) ...
[junit] Selecting previously unselected package r-cran-testthat.
[junit] Preparing to unpack .../r-cran-testthat_0.7.1-1_all.deb ...
[junit] Unpacking r-cran-testthat (0.7.1-1) ...
[junit] Setting up r-cran-digest (0.6.4-1) ...
[junit] Setting up r-cran-plyr (1.8-1build1) ...
[junit] Setting up r-cran-stringr (0.6.2-1) ...
[junit] Setting up r-cran-evaluate (0.5.1-1) ...
[junit] Setting up r-cran-testthat (0.7.1-1) ...
[junit] Removing intermediate container 17d01b5bff93
[junit] ---> 64d42cae8b9f
[junit] Step 8/15 : COPY ./ /kb/module
[junit] ---> 66d6edc42ba9
[junit] Step 9/15 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in ed44fd9ec163
[junit] From https://github.com/kbase/jars
[junit] fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 299 bytes 1,368,136.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container ed44fd9ec163
[junit] ---> 249ed9d078ed
[junit] Step 10/15 : RUN mkdir -p /kb/module/work
[junit] ---> Running in c016b08f60c1
[junit] Removing intermediate container c016b08f60c1
[junit] ---> 7719a195fb82
[junit] Step 11/15 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 47e575f63cca
[junit] Removing intermediate container 47e575f63cca
[junit] ---> d93f2aecf68f
[junit] Step 12/15 : WORKDIR /kb/module
[junit] Removing intermediate container ad58e5fc780b
[junit] ---> 7f6b5b6f7cb6
[junit] Step 13/15 : RUN make all
[junit] ---> Running in 77fab4ffdf2c
[junit] kb-sdk compile ASimpleModule_for_unit_testingRError.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingRError::ASimpleModule_for_unit_testingRErrorClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingRError.ASimpleModule_for_unit_testingRErrorClient \
[junit] --rclname ASimpleModule_for_unit_testingRError/ASimpleModule_for_unit_testingRErrorClient \
[junit] --javasrc src \
[junit] --java \
[junit] --rsrvname ASimpleModule_for_unit_testingRError/ASimpleModule_for_unit_testingRErrorServer \
[junit] --rimplname ASimpleModule_for_unit_testingRError/ASimpleModule_for_unit_testingRErrorImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] ************************************************************************
[junit] WARNING: R support is deprecated and will be removed in a future release
[junit] ************************************************************************
[junit] curl https://raw.githubusercontent.com/kbase/workspace_deluxe/master/workspace.spec > workspace.spec
[junit]   % Total    % Received % Xferd  Average Speed   Time    Time     Time Current
[junit]                            Dload  Upload   Total  Spent  Left Speed
[junit] 
[junit]   0  0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
[junit] 100 70784  100 70784   0    0 120k 0 --:--:-- --:--:-- --:--:-- 121k
[junit] kb-sdk compile workspace.spec --out lib --rclname Workspace/WorkspaceClient
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'echo "Synchronous server mode is not supported"' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_ASimpleModule_for_unit_testingRError_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_ASimpleModule_for_unit_testingRError_async_job.sh
[junit] echo 'export R_LIBS=/kb/deployment/lib' >> bin/run_ASimpleModule_for_unit_testingRError_async_job.sh
[junit] echo 'Rscript $script_dir/../lib/ASimpleModule_for_unit_testingRError/ASimpleModule_for_unit_testingRErrorServer.r $1 $2 $3' >> bin/run_ASimpleModule_for_unit_testingRError_async_job.sh
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingRError_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export R_LIBS=/kb/deployment/lib' >> test/run_tests.sh
[junit] echo 'cd $script_dir/..' >> test/run_tests.sh
[junit] echo 'R -q -e "for(infile in dir(\"test\", pattern=\"_test\\\\\\\\.r$\")) {source(paste(\"test\",infile,sep=\"/\"))}"' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container 77fab4ffdf2c
[junit] ---> 3f6723c22223
[junit] Step 14/15 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 75d1085c9de4
[junit] Removing intermediate container 75d1085c9de4
[junit] ---> 3ac5668655ec
[junit] Step 15/15 : CMD [ ]
[junit] ---> Running in 4a3c03d5404d
[junit] Removing intermediate container 4a3c03d5404d
[junit] ---> 3236b92c931e
[junit] Successfully built 3236b92c931e
[junit] Successfully tagged test/asimplemodule_for_unit_testingrerror:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] > for(infile in dir("test", pattern="_test\\.r$")) {source(paste("test",infile,sep="/"))}
[junit] Shutting down callback server...
[junit] 1525996275.57 - CallbackServer: Shutting down executor service
[junit] Exit code: 2
[junit]
[junit] Test [testSelfCalls]
[junit] Done! Your module is available in the ASimpleModule_for_unit_testingSelf directory.
[junit] Validation step is skipped
[junit]
[junit] Delete old Docker containers
[junit] Can't find image [test/asimplemodule_for_unit_testingself:latest]. Here is 'docker images' output:
[junit] REPOSITORY TAG IMAGE ID CREATED SIZE
[junit] test/asimplemodule_for_unit_testingrerror latest 3236b92c931e 2 seconds ago 5.23GB
[junit] test/asimplemodule_for_unit_testingjavaerror latest 681fb234ab6d About a minute ago 5.23GB
[junit] test/asimplemodule_for_unit_testingjava latest 668b6b147dba About a minute ago 5.23GB
[junit] test/asimplemodule_for_unit_testingpythonerror latest 55f7245210df 2 minutes ago 5.22GB
[junit] test/asimplemodule_for_unit_testingpython latest e1dbf773de54 2 minutes ago 5.22GB
[junit] test/asimplemodule_for_unit_testingperlerror latest c6d1dbc73b48 2 minutes ago 5.33GB
[junit] test/asimplemodule_for_unit_testingperl latest 1d6c9101e24f 3 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_perl latest 55aa0915f3dc 5 minutes ago 5.33GB
[junit] test/targetmodule_for_unit_testing_python latest c4b95bb7f706 5 minutes ago 5.22GB
[junit] test/targetmodule_for_unit_testing_java latest f28fd8862728 6 minutes ago 5.23GB
[junit] test/testdynamicpython latest 552f39396177 7 minutes ago 5.22GB
[junit] test/testdynamicjava latest 2a5ba05fd3b2 7 minutes ago 5.23GB
[junit] test/testdynamicperl latest 62669418da9a 7 minutes ago 5.22GB
[junit] test/testasyncpython latest 24c6ca7fed28 8 minutes ago 5.22GB
[junit] test/testasyncjava latest 2c6f28d6ad32 8 minutes ago 5.23GB
[junit] test/testasyncperl latest 3d804b19c723 9 minutes ago 5.22GB
[junit] <none> <none> ef8af67024f9 10 minutes ago 5.33GB
[junit] kbase/kbase sdkbase2.latest c982660ab775 2 months ago 5.2GB
[junit] dockerhub-ci.kbase.us/kbase assemblyutil.2b9b53d852190c94996e620d4754ca6aa98c0cb4 88e3ff3fdcee 5 months ago 5.12GB
[junit] dockerhub-ci.kbase.us/kbase datafileutil.c4733f9c81bcc8228c63ceeb2c0540df9e61153e 36355672382c 9 months ago 5.79GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.90149814a1581277800b7c3e172b57796c9c323b ea05a706e3ad 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_2.284948a93524ba51e48b1c71693b269647c125c3 95d6be4349f9 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase njs_sdk_test_1.03b9210ac825858c1ae6339786686cea5dac5929 f064571de654 9 months ago 5.09GB
[junit] dockerhub-ci.kbase.us/kbase kbasereport.2cd253149595332c86667495032134ba64a7a96e 37f11a9382fc 9 months ago 5.12GB
[junit]
[junit]
[junit] Build Docker image
[junit] Sending build context to Docker daemon 1.768MB
[junit]
[junit] Step 1/10 : FROM kbase/kbase:sdkbase2.latest
[junit] ---> c982660ab775
[junit] Step 2/10 : MAINTAINER KBase Developer
[junit] ---> Using cache
[junit] ---> eb155f0da5d6
[junit] Step 3/10 : COPY ./ /kb/module
[junit] ---> 9d4f19cd9046
[junit] Step 4/10 : RUN . /kb/dev_container/user-env.sh && cd /kb/dev_container/modules/jars && git pull && make && make deploy && rm /kb/dev_container/bin/kb-sdk && rm /kb/deployment/bin/kb-sdk && cd /kb/dev_container/modules/kb_sdk && cp -r /kb/module/kb_sdk/* ./ && make deploy && echo "Thu May 10 23:47:34 UTC 2018"
[junit] ---> Running in 5b1cf4bf776f
[junit] From https://github.com/kbase/jars
[junit]  fba4976..b992542 master -> origin/master
[junit] Updating fba4976..b992542
[junit] Fast-forward
[junit] .../unix-socket-factory-2016-04-06T22-21-19.jar | Bin 0 -> 3339 bytes
[junit] lib/jars/jcommander/jcommander-1.72-javadoc.jar | Bin 0 -> 22 bytes
[junit] lib/jars/jcommander/jcommander-1.72-sources.jar | Bin 0 -> 60907 bytes
[junit] lib/jars/jcommander/jcommander-1.72.jar | Bin 0 -> 69254 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar | Bin 0 -> 360046 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar | Bin 0 -> 360162 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip | Bin 0 -> 12172 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar | Bin 0 -> 585415 bytes
[junit] lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar | Bin 0 -> 587274 bytes
[junit] 9 files changed, 0 insertions(+), 0 deletions(-)
[junit] create mode 100644 lib/jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-javadoc.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72-sources.jar
[junit] create mode 100644 lib/jars/jcommander/jcommander-1.72.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] create mode 100644 lib/jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit] Nothing to be done
[junit] rsync --exclude '*.bak*' -arv lib/. /kb/deployment/lib/.
[junit] sending incremental file list
[junit] ./
[junit] jars/gesellix/
[junit] jars/gesellix/unix-socket-factory-2016-04-06T22-21-19.jar
[junit] jars/jcommander/
[junit] jars/jcommander/jcommander-1.72-javadoc.jar
[junit] jars/jcommander/jcommander-1.72-sources.jar
[junit] jars/jcommander/jcommander-1.72.jar
[junit] jars/kbase/auth2/
[junit] jars/kbase/auth2/kbase-auth2-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2-0.2.4.jar
[junit] jars/kbase/auth2/kbase-auth2templates-0.2.4.zip
[junit] jars/kbase/auth2/kbase-auth2test-0.2.3.jar
[junit] jars/kbase/auth2/kbase-auth2test-0.2.4.jar
[junit]
[junit] sent 2,051,905 bytes received 303 bytes 4,104,416.00 bytes/sec
[junit] total size is 157,487,961 speedup is 76.74
[junit] No clients to deploy
[junit] No service to deploy
[junit] if [ "/kb/deployment" = "" ]; \
[junit] then \
[junit] echo "Error makefile variable TARGET must be defined to deploy-scripts"; \
[junit] exit 1; \
[junit] fi;
[junit] ant deploy_bin -DBIN_TARGET=/kb/deployment/bin -DBIN_LIB_TARGET=/kb/deployment/lib -DKBASE_COMMON_JAR=kbase/common/kbase-common-0.0.23.jar
[junit] Buildfile: /kb/dev_container/modules/kb_sdk/build.xml
[junit]
[junit] deploy_bin:
[junit] [copy] Copying 1 file to /kb/deployment/lib
[junit] [echo] Successfully deployed lib to: /kb/deployment/lib/kbase_module_builder2.jar
[junit] [echo] Linking against jar directory: /kb/deployment/lib/jars
[junit]
[junit] BUILD SUCCESSFUL
[junit] Total time: 0 seconds
[junit] Thu May 10 23:47:34 UTC 2018
[junit] Removing intermediate container 5b1cf4bf776f
[junit] ---> 4cef0b1f243f
[junit] Step 5/10 : RUN mkdir -p /kb/module/work
[junit] ---> Running in 2a1c4a063926
[junit] Removing intermediate container 2a1c4a063926
[junit] ---> 33248e0cb69d
[junit] Step 6/10 : RUN chmod -R a+rw /kb/module
[junit] ---> Running in 3d3884b1fb5a
[junit] Removing intermediate container 3d3884b1fb5a
[junit] ---> 4a358d5c7c1f
[junit] Step 7/10 : WORKDIR /kb/module
[junit] Removing intermediate container 3cb106ec2889
[junit] ---> 6bb4346b7613
[junit] Step 8/10 : RUN make all
[junit] ---> Running in ef23249911bc
[junit] kb-sdk compile ASimpleModule_for_unit_testingSelf.spec \
[junit] --out lib \
[junit] --plclname ASimpleModule_for_unit_testingSelf::ASimpleModule_for_unit_testingSelfClient \
[junit] --jsclname javascript/Client \
[junit] --pyclname ASimpleModule_for_unit_testingSelf.ASimpleModule_for_unit_testingSelfClient \
[junit] --javasrc src \
[junit] --java \
[junit] --pysrvname ASimpleModule_for_unit_testingSelf.ASimpleModule_for_unit_testingSelfServer \
[junit] --pyimplname ASimpleModule_for_unit_testingSelf.ASimpleModule_for_unit_testingSelfImpl;
[junit] KBase SDK version 1.0.18 (commit 52aeb8c9a60c66e187c6ff204fdf2ca8a820759b)
[junit] chmod +x scripts/entrypoint.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > scripts/start_server.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> scripts/start_server.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> scripts/start_server.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> scripts/start_server.sh
[junit] echo 'uwsgi --master --processes 5 --threads 5 --http :5000 --wsgi-file $script_dir/../lib/ASimpleModule_for_unit_testingSelf/ASimpleModule_for_unit_testingSelfServer.py' >> scripts/start_server.sh
[junit] chmod +x scripts/start_server.sh
[junit] mkdir -p bin
[junit] echo '#!/bin/bash' > bin/run_ASimpleModule_for_unit_testingSelf_async_job.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> bin/run_ASimpleModule_for_unit_testingSelf_async_job.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> bin/run_ASimpleModule_for_unit_testingSelf_async_job.sh
[junit] echo 'python -u $script_dir/../lib/ASimpleModule_for_unit_testingSelf/ASimpleModule_for_unit_testingSelfServer.py $1 $2 $3' >> bin/run_ASimpleModule_for_unit_testingSelf_async_job.sh
[junit] chmod +x bin/run_ASimpleModule_for_unit_testingSelf_async_job.sh
[junit] echo '#!/bin/bash' > test/run_tests.sh
[junit] echo 'script_dir=$(dirname "$(readlink -f "$0")")' >> test/run_tests.sh
[junit] echo 'export KB_DEPLOYMENT_CONFIG=$script_dir/../deploy.cfg' >> test/run_tests.sh
[junit] echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> test/run_tests.sh
[junit] echo 'export PYTHONPATH=$script_dir/../lib:$PATH:$PYTHONPATH' >> test/run_tests.sh
[junit] echo 'cd $script_dir/../test' >> test/run_tests.sh
[junit] echo 'python -m nose --with-coverage --cover-package=ASimpleModule_for_unit_testingSelf --cover-html --cover-html-dir=/kb/module/work/test_coverage --nocapture --nologcapture .' >> test/run_tests.sh
[junit] chmod +x test/run_tests.sh
[junit] Removing intermediate container ef23249911bc
[junit] ---> 92a687836580
[junit] Step 9/10 : ENTRYPOINT [ "./scripts/entrypoint.sh" ]
[junit] ---> Running in 31cccfa5569a
[junit] Removing intermediate container 31cccfa5569a
[junit] ---> 8cae92754447
[junit] Step 10/10 : CMD [ ]
[junit] ---> Running in 12ec54c239a3
[junit] Removing intermediate container 12ec54c239a3
[junit] ---> 90ac0a7b1430
[junit] Successfully built 90ac0a7b1430
[junit] Successfully tagged test/asimplemodule_for_unit_testingself:latest
[junit]
[junit] Run Tests
[junit] if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
[junit] bash test/run_tests.sh
[junit] 1525996283.88 - CallbackServer: Subjob method: ASimpleModule_for_unit_testingSelf.calc_square JobID: cca9f266-9250-4779-b057-6042c8922931
[junit] 1525996283.88 - CallbackServer: WARNING: Module ASimpleModule_for_unit_testingSelf was already used once for this job. Using cached version:
[junit] url: https://localhost
[junit] commit: local-docker-image
[junit] version: local
[junit] release: dev
[junit]
[junit] Shutting down callback server...
[junit] 1525996285.10 - CallbackServer: Shutting down executor service
[junit] Exit code: 0
[junit]
[junit] ------------- ---------------- ---------------
[junit] ------------- Standard Error -----------------
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/bin/../lib/KBaseReport/KBaseReportServer.pm line 274.
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: "DataFileUtil.get_objects" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: Traceback (most recent call last):
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: result = method(ctx, *params)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: [params], self._service_ver, context)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: return self._call(url, service_method, args, context)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: raise ServerError(**err['error'])
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525996093.00 - CallbackServer[cdd6613e-92cd-4eb2-a55d-0449f493eb2d]: ... 36 more
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: "AssemblyUtil.get_assembly_as_fasta" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: Traceback (most recent call last):
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/bin/../lib/AssemblyUtil/AssemblyUtilServer.py", line 95, in _call_method
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: result = method(ctx, *params)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/AssemblyUtil/AssemblyUtilImpl.py", line 62, in get_assembly_as_fasta
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: file = atf.assembly_as_fasta(ctx, params)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/AssemblyUtil/AssemblyToFasta.py", line 48, in assembly_as_fasta
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: assembly_object = self.dfu.get_objects({'object_refs': [params['ref']]})['data'][0]
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 607, in get_objects
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: job_state = self._check_job(job_id)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 44, in _check_job
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: return self._client._check_job('DataFileUtil', job_id)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 216, in _check_job
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: return self._call(self.url, service + '._check_job', [job_id])
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 183, in _call
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: raise ServerError(**err['error'])
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: ServerError: Server error: -32000. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: Traceback (most recent call last):
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: result = method(ctx, *params)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: [params], self._service_ver, context)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: return self._call(url, service_method, args, context)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: raise ServerError(**err['error'])
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525996093.57 - CallbackServer[e2b6d9d0-4624-4f1f-b287-cfa53090bed2]: ... 36 more
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Special error at /kb/module/test/../lib/ASimpleModule_for_unit_testingPerlError/ASimpleModule_for_unit_testingPerlErrorImpl.pm line 138.
[junit] make: *** [test] Error 2
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/bin/../lib/KBaseReport/KBaseReportServer.pm line 274.
[junit] ...
[junit] Name Stmts Miss Cover
[junit] -----------------------------------------------------------------------------------------------------------------------
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPython/ASimpleModule_for_unit_testingPythonClient.py 15 15 0%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPython/ASimpleModule_for_unit_testingPythonImpl.py 60 6 90%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPython/ASimpleModule_for_unit_testingPythonServer.py 369 275 25%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPython/__init__.py 0 0 100%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPython/authclient.py 58 18 69%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPython/baseclient.py 147 147 0%
[junit] -----------------------------------------------------------------------------------------------------------------------
[junit] TOTAL 649 461 29%
[junit] ----------------------------------------------------------------------
[junit] Ran 3 tests in 22.996s
[junit]
[junit] OK
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] FFE
[junit] ======================================================================
[junit] ERROR: test_filter_contigs_ok (ASimpleModule_for_unit_testingPythonError_server_test.ASimpleModule_for_unit_testingPythonErrorTest)
[junit] ----------------------------------------------------------------------
[junit] Traceback (most recent call last):
[junit] File "/kb/module/test/ASimpleModule_for_unit_testingPythonError_server_test.py", line 110, in test_filter_contigs_ok
[junit] 'min_length': 10
[junit] File "/kb/module/lib/ASimpleModule_for_unit_testingPythonError/ASimpleModule_for_unit_testingPythonErrorImpl.py", line 90, in filter_contigs
[junit] raise ValueError('Special error')
[junit] ValueError: Special error
[junit]
[junit] ======================================================================
[junit] FAIL: test_filter_contigs_err1 (ASimpleModule_for_unit_testingPythonError_server_test.ASimpleModule_for_unit_testingPythonErrorTest)
[junit] ----------------------------------------------------------------------
[junit] Traceback (most recent call last):
[junit] File "/kb/module/test/ASimpleModule_for_unit_testingPythonError_server_test.py", line 124, in test_filter_contigs_err1
[junit] self.assertIn('min_length parameter cannot be negative', str(errorContext.exception))
[junit] AssertionError: 'min_length parameter cannot be negative' not found in 'Special error'
[junit]
[junit] ======================================================================
[junit] FAIL: test_filter_contigs_err2 (ASimpleModule_for_unit_testingPythonError_server_test.ASimpleModule_for_unit_testingPythonErrorTest)
[junit] ----------------------------------------------------------------------
[junit] Traceback (most recent call last):
[junit] File "/kb/module/test/ASimpleModule_for_unit_testingPythonError_server_test.py", line 132, in test_filter_contigs_err2
[junit] self.assertIn('Cannot parse integer from min_length parameter', str(errorContext.exception))
[junit] AssertionError: 'Cannot parse integer from min_length parameter' not found in 'Special error'
[junit]
[junit] Name Stmts Miss Cover
[junit] ---------------------------------------------------------------------------------------------------------------------------------
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPythonError/ASimpleModule_for_unit_testingPythonErrorClient.py 15 15 0%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPythonError/ASimpleModule_for_unit_testingPythonErrorImpl.py 61 45 26%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPythonError/ASimpleModule_for_unit_testingPythonErrorServer.py 369 275 25%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPythonError/__init__.py 0 0 100%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPythonError/authclient.py 58 18 69%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingPythonError/baseclient.py 147 147 0%
[junit] ---------------------------------------------------------------------------------------------------------------------------------
[junit] TOTAL 650 500 23%
[junit] ----------------------------------------------------------------------
[junit] Ran 3 tests in 8.153s
[junit]
[junit] FAILED (errors=1, failures=2)
[junit] make: *** [test] Error 1
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] Use of uninitialized value in concatenation (.) or string at /kb/module/bin/../lib/KBaseReport/KBaseReportServer.pm line 274.
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: "DataFileUtil.get_objects" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: Traceback (most recent call last):
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: result = method(ctx, *params)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: [params], self._service_ver, context)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: return self._call(url, service_method, args, context)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: raise ServerError(**err['error'])
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525996199.30 - CallbackServer[7d6f3ecd-968e-4d40-aebc-3730f110338c]: ... 36 more
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: "AssemblyUtil.get_assembly_as_fasta" job threw an error, name="Server error", code=-32000, message="Error on ObjectSpecification #1: Illegal number of separators / in object reference fake", data:
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: Traceback (most recent call last):
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/bin/../lib/AssemblyUtil/AssemblyUtilServer.py", line 95, in _call_method
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: result = method(ctx, *params)
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/AssemblyUtil/AssemblyUtilImpl.py", line 62, in get_assembly_as_fasta
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: file = atf.assembly_as_fasta(ctx, params)
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/AssemblyUtil/AssemblyToFasta.py", line 48, in assembly_as_fasta
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: assembly_object = self.dfu.get_objects({'object_refs': [params['ref']]})['data'][0]
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 607, in get_objects
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: job_state = self._check_job(job_id)
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/DataFileUtil/DataFileUtilClient.py", line 44, in _check_job
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: return self._client._check_job('DataFileUtil', job_id)
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 216, in _check_job
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: return self._call(self.url, service + '._check_job', [job_id])
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/DataFileUtil/baseclient.py", line 183, in _call
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: raise ServerError(**err['error'])
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: ServerError: Server error: -32000. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: Traceback (most recent call last):
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/bin/../lib/DataFileUtil/DataFileUtilServer.py", line 95, in _call_method
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: result = method(ctx, *params)
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/DataFileUtil/DataFileUtilImpl.py", line 1420, in get_objects
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: retobjs = ws.get_objects2(input_)['data']
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/Workspace/WorkspaceClient.py", line 1973, in get_objects2
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: [params], self._service_ver, context)
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/Workspace/baseclient.py", line 257, in call_method
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: return self._call(url, service_method, args, context)
[junit] 1525996199.92 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: File "/kb/module/lib/Workspace/baseclient.py", line 178, in _call
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: raise ServerError(**err['error'])
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: ServerError: JSONRPCError: -32500. Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: java.lang.IllegalArgumentException: Error on ObjectSpecification #1: Illegal number of separators / in object reference fake
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:194)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.workspace.kbase.WorkspaceServerMethods.getObjects(WorkspaceServerMethods.java:463)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.workspace.WorkspaceServer.getObjects2(WorkspaceServer.java:689)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at sun.reflect.GeneratedMethodAccessor107.invoke(Unknown Source)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at java.lang.reflect.Method.invoke(Method.java:498)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.common.service.JsonServerServlet.processRpcCall(JsonServerServlet.java:610)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.common.service.JsonServerServlet.doPost(JsonServerServlet.java:463)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:799)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:861)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.tomcat.util.net.Nio2Endpoint$SocketProcessor.doRun(Nio2Endpoint.java:1697)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.tomcat.util.net.AbstractEndpoint.processSocket(AbstractEndpoint.java:934)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:626)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at org.apache.tomcat.util.net.Nio2Endpoint$Nio2SocketWrapper$4.completed(Nio2Endpoint.java:604)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at sun.nio.ch.Invoker.invokeUnchecked(Invoker.java:126)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at sun.nio.ch.Invoker$2.run(Invoker.java:218)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at sun.nio.ch.AsynchronousChannelGroupImpl$1.run(AsynchronousChannelGroupImpl.java:112)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at java.lang.Thread.run(Thread.java:748)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: Caused by: java.lang.IllegalArgumentException: Illegal number of separators / in object reference fake
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.workspace.database.ObjectIdentifier.parseObjectReference(ObjectIdentifier.java:162)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectIdentifier(IdentifierUtils.java:103)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: at us.kbase.workspace.kbase.IdentifierUtils.processObjectSpecifications(IdentifierUtils.java:184)
[junit] 1525996199.93 - CallbackServer[93b76ca6-5e83-4905-9ae6-234eed2bec9c]: ... 36 more
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:339: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] SNIMissingWarning
[junit] /usr/local/lib/python2.7/dist-packages/urllib3/util/ssl_.py:137: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
[junit] InsecurePlatformWarning
[junit]
[junit] BUILD FAILED
[junit] /kb/module/build.xml:102: Test asimplemoduleforunittestingjavaerror.test.ASimpleModuleForUnitTestingJavaErrorServerTest failed
[junit]
[junit] Total time: 9 seconds
[junit] make: *** [test] Error 1
[junit] Error in library(raster) : there is no package called 'raster'
[junit] Calls: source -> withVisible -> eval -> eval -> library
[junit] Execution halted
[junit] make: *** [test] Error 1
[junit] .
[junit] Name Stmts Miss Cover
[junit] -------------------------------------------------------------------------------------------------------------------
[junit] /kb/module/lib/ASimpleModule_for_unit_testingSelf/ASimpleModule_for_unit_testingSelfClient.py 17 5 71%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingSelf/ASimpleModule_for_unit_testingSelfImpl.py 21 7 67%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingSelf/ASimpleModule_for_unit_testingSelfServer.py 371 275 26%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingSelf/__init__.py 0 0 100%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingSelf/authclient.py 58 18 69%
[junit] /kb/module/lib/ASimpleModule_for_unit_testingSelf/baseclient.py 147 79 46%
[junit] -------------------------------------------------------------------------------------------------------------------
[junit] TOTAL 614 384 37%
[junit] ----------------------------------------------------------------------
[junit] Ran 1 test in 1.143s
[junit]
[junit] OK
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testPerlModuleExample took 42.349 sec
[junit] Testcase: testPerlModuleError took 16.898 sec
[junit] Testcase: testPythonModuleExample took 31.798 sec
[junit] Testcase: testPythonModuleError took 17.347 sec
[junit] Testcase: testJavaModuleExample took 40.323 sec
[junit] Testcase: testJavaModuleError took 21.758 sec
[junit] Testcase: testRModuleError took 52.608 sec
[junit] Testcase: testSelfCalls took 9.525 sec
[junit] Running us.kbase.mobu.validator.test.ModuleValidatorTest
[junit] Testsuite: us.kbase.mobu.validator.test.ModuleValidatorTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.57 sec
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.57 sec
[junit]
[junit] Testcase: testSimpleParams took 0.534 sec
[junit] Testcase: testGroupParams took 0.018 sec
[junit] Running us.kbase.scripts.test.TypeGeneratorTest
[junit] Testsuite: us.kbase.scripts.test.TypeGeneratorTest
[junit] Tests run: 21, Failures: 0, Errors: 15, Skipped: 0, Time elapsed: 161.307 sec
[junit] Tests run: 21, Failures: 0, Errors: 15, Skipped: 0, Time elapsed: 161.307 sec
[junit] ------------- Standard Output ---------------
[junit]
[junit] Test 7 (testEmptyArgsAndReturns) is starting in directory: /vagrant/kb_sdk/temp_test/test7_1525996290979
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 8 (testServerCodeStoring) is staring in directory: test8_1525996300155
[junit]
[junit] Test 9 (testGwtTransform) is starting in directory: /vagrant/kb_sdk/temp_test/test9_1525996301993
[junit] - Java client -> no server
[junit]
[junit] Test 10 (testComments) is starting in directory: /vagrant/kb_sdk/temp_test/test10_1525996306427
[junit] - Java client -> no server
[junit]
[junit] Test 11 (testIncludsAndMultiModules2) is starting in directory: /vagrant/kb_sdk/temp_test/test11_1525996310754
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 12 (testAsyncMethods) is starting in directory: test12_1525996320073
[junit] - Java client -> Perl server
[junit]
[junit] Test 13 (testErrors) is starting in directory: /vagrant/kb_sdk/temp_test/test13_1525996325585
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 14 (testRpcContext) is starting in directory: test14_1525996334247
[junit] Java server was started up
[junit] - Java client -> Java server
[junit] Java server was stopped
[junit]
[junit] Test 15 (testServerAuth) is starting in directory: /vagrant/kb_sdk/temp_test/test15_1525996338758
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 16 (testMissingMethods) is starting in directory: test16_1525996347696
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 17 (testEmptyPackageParent) is starting in directory: test17_1525996356581
[junit] Java server was started up
[junit] - Java client -> Java server
[junit] Java server was stopped
[junit]
[junit] Test 18 (testProvenance) is staring in directory: test18_1525996360193
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 19 (testStatus) is starting in directory: test19_1525996368851
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 20 (testNoStatus) is starting in directory: test20_1525996377832
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 21 (testDynamicClients) is starting in directory: test21_1525996386607
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 1 (testSimpleTypesAndStructures) is starting in directory: /vagrant/kb_sdk/temp_test/test1_1525996396111
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 2 (testIncludsAndMultiModules) is starting in directory: /vagrant/kb_sdk/temp_test/test2_1525996405437
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 3 (testTuples) is starting in directory: /vagrant/kb_sdk/temp_test/test3_1525996414691
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 4 (testObject) is starting in directory: /vagrant/kb_sdk/temp_test/test4_1525996423886
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit]
[junit] Test 5 (testSyslog) is starting in directory: test5_1525996433139
[junit] Java server was started up
[junit] - Java client -> Java server
[junit] Java server was stopped
[junit]
[junit] Test 6 (testAuth) is starting in directory: /vagrant/kb_sdk/temp_test/test6_1525996438595
[junit] Perl server was started up
[junit] - Java client -> Perl server
[junit] Perl server was stopped
[junit] ------------- ---------------- ---------------
[junit] ------------- Standard Error -----------------
[junit] us.kbase.common.service.ServerException: Job service side error: /vagrant/kb_sdk/temp_test/test12_1525996320073/job_1/output.json (No such file or directory)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:411)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:305)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:286)
[junit] at us.kbase.test12.asyncmethods.AsyncMethodsClient._checkJob(AsyncMethodsClient.java:196)
[junit] at us.kbase.test12.asyncmethods.AsyncMethodsClient.getNoObject(AsyncMethodsClient.java:234)
[junit] at us.kbase.test12.Test12.<init>(Test12.java:24)
[junit] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
[junit] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
[junit] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1042)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testAsyncMethods(TypeGeneratorTest.java:370)
[junit] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[junit] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[junit] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] at java.lang.reflect.Method.invoke(Method.java:498)
[junit] at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
[junit] at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
[junit] at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
[junit] at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
[junit] at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
[junit] at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
[junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:69)
[junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:48)
[junit] at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
[junit] at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
[junit] at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
[junit] at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
[junit] at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
[junit] at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
[junit] at org.junit.runners.ParentRunner.run(ParentRunner.java:292)
[junit] at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:39)
[junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:535)
[junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:1182)
[junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:1033)
[junit] Note: src/us/kbase/test18/provenance/ProvenanceServer.java uses unchecked or unsafe operations.
[junit] Note: Recompile with -Xlint:unchecked for details.
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testEmptyArgsAndReturns took 9.196 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test7.emptyargs.EmptyArgsClient.getObject(EmptyArgsClient.java:130)
[junit] at us.kbase.test7.Test7.<init>(Test7.java:8)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:618)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:603)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testEmptyArgsAndReturns(TypeGeneratorTest.java:212)
[junit]
[junit] Testcase: testServerCodeStoring took 1.825 sec
[junit] Testcase: testGwtTransform took 4.392 sec
[junit] Testcase: testComments took 4.349 sec
[junit] Testcase: testIncludsAndMultiModules2 took 9.177 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test11.outer.OuterClient.send(OuterClient.java:133)
[junit] at us.kbase.test11.Test11.<init>(Test11.java:14)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:618)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:603)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testIncludsAndMultiModules2(TypeGeneratorTest.java:336)
[junit]
[junit] Testcase: testAsyncMethods took 5.667 sec
[junit] Caused an ERROR
[junit] ServerException: Job service side error: /vagrant/kb_sdk/temp_test/test12_1525996320073/job_1/output.json (No such file or directory) (null)
[junit] java.lang.IllegalStateException: ServerException: Job service side error: /vagrant/kb_sdk/temp_test/test12_1525996320073/job_1/output.json (No such file or directory) (null)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1064)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testAsyncMethods(TypeGeneratorTest.java:370)
[junit]
[junit] Testcase: testErrors took 8.652 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test13.serversideerrors.ServerSideErrorsClient.throwErrorOnServerSide(ServerSideErrorsClient.java:133)
[junit] at us.kbase.test13.Test13.<init>(Test13.java:13)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testErrors(TypeGeneratorTest.java:398)
[junit]
[junit] Testcase: testRpcContext took 4.427 sec
[junit] Testcase: testServerAuth took 8.924 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.test15.Test15.jsonrpcCall(Test15.java:72)
[junit] at us.kbase.test15.Test15.authCall(Test15.java:56)
[junit] at us.kbase.test15.Test15.<init>(Test15.java:36)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1042)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:618)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:603)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testServerAuth(TypeGeneratorTest.java:422)
[junit]
[junit] Testcase: testMissingMethods took 8.907 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.test16.Test16.jsonrpcCall(Test16.java:68)
[junit] at us.kbase.test16.Test16.unknownMethod(Test16.java:52)
[junit] at us.kbase.test16.Test16.<init>(Test16.java:38)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1042)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testMissingMethods(TypeGeneratorTest.java:436)
[junit]
[junit] Testcase: testEmptyPackageParent took 3.623 sec
[junit] Testcase: testProvenance took 8.675 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test18.provenance.ProvenanceClient.getProv(ProvenanceClient.java:148)
[junit] at us.kbase.test18.Test18.<init>(Test18.java:19)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testProvenance(TypeGeneratorTest.java:485)
[junit]
[junit] Testcase: testStatus took 8.948 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:305)
[junit] at us.kbase.test19.Test19.<init>(Test19.java:23)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1042)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testStatus(TypeGeneratorTest.java:512)
[junit]
[junit] Testcase: testNoStatus took 8.716 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:305)
[junit] at us.kbase.test20.Test20.<init>(Test20.java:23)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1042)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testNoStatus(TypeGeneratorTest.java:544)
[junit]
[junit] Testcase: testDynamicClients took 9.484 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test21.dynamic.DynamicClient.getObject(DynamicClient.java:134)
[junit] at us.kbase.test21.Test21.<init>(Test21.java:10)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testDynamicClients(TypeGeneratorTest.java:569)
[junit]
[junit] Testcase: testSimpleTypesAndStructures took 9.295 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test1.basic.BasicClient.oneSimpleParam(BasicClient.java:136)
[junit] at us.kbase.test1.Test1.<init>(Test1.java:20)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:618)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:603)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testSimpleTypesAndStructures(TypeGeneratorTest.java:151)
[junit]
[junit] Testcase: testIncludsAndMultiModules took 9.365 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test2.regulation.RegulationClient.getGenome(RegulationClient.java:139)
[junit] at us.kbase.test2.Test2.<init>(Test2.java:21)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:618)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:603)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testIncludsAndMultiModules(TypeGeneratorTest.java:156)
[junit]
[junit] Testcase: testTuples took 9.174 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test3.tuplestest.TuplesTestClient.simpleCall(TuplesTestClient.java:135)
[junit] at us.kbase.test3.Test3.<init>(Test3.java:32)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:618)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:603)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testTuples(TypeGeneratorTest.java:161)
[junit]
[junit] Testcase: testObject took 9.309 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test4.objecttest.ObjectTestClient.objectCheck(ObjectTestClient.java:137)
[junit] at us.kbase.test4.Test4.<init>(Test4.java:42)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1040)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:635)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:618)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.startTest(TypeGeneratorTest.java:603)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testObject(TypeGeneratorTest.java:166)
[junit]
[junit] Testcase: testSyslog took 5.397 sec
[junit] Testcase: testAuth took 12.837 sec
[junit] Caused an ERROR
[junit] Connection refused (Connection refused)
[junit] java.net.ConnectException: Connection refused (Connection refused)
[junit] at java.net.PlainSocketImpl.socketConnect(Native Method)
[junit] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
[junit] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
[junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
[junit] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
[junit] at java.net.Socket.connect(Socket.java:589)
[junit] at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
[junit] at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
[junit] at sun.net.www.http.HttpClient.<init>(HttpClient.java:242)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:339)
[junit] at sun.net.www.http.HttpClient.New(HttpClient.java:357)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1220)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
[junit] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
[junit] at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:984)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1334)
[junit] at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1309)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCallStatic(JsonClientCaller.java:363)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:329)
[junit] at us.kbase.common.service.JsonClientCaller.jsonrpcCall(JsonClientCaller.java:298)
[junit] at us.kbase.test6.authtest.AuthTestClient.callWithOptAuth(AuthTestClient.java:229)
[junit] at us.kbase.test6.Test6.<init>(Test6.java:23)
[junit] at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runJavaClientTest(TypeGeneratorTest.java:1042)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runClientTest(TypeGeneratorTest.java:997)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:803)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.runPerlServerTest(TypeGeneratorTest.java:753)
[junit] at us.kbase.scripts.test.TypeGeneratorTest.testAuth(TypeGeneratorTest.java:200)
[junit]
Makefile:117: recipe for target 'test' failed
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