Manylinux docker file to install libtiff and openslide

Dockerfile

#FROM quay.io/pypa/manylinux1_x86_64
FROM dockcross/manylinux-x64
# FROM quay.io/pypa/manylinux1_i686
# Includes glibc 2.5

RUN mkdir /build
WORKDIR /build

RUN yum install -y \
    # for easier development
    man \
    vim-enhanced

# Update autotools, perl, m4, pkg-config

RUN curl http://pkgconfig.freedesktop.org/releases/pkg-config-0.29.2.tar.gz -L -o pkg-config.tar.gz && \
    mkdir pkg-config && \
    tar -zxf pkg-config.tar.gz -C pkg-config --strip-components 1 && \
    cd pkg-config && \
    ./configure --prefix=/usr/local --with-internal-glib --disable-host-tool && \
    make && \
    make install 
    
# 1.4.17
RUN curl ftp://ftp.gnu.org/gnu/m4/m4-latest.tar.gz -L -o m4.tar.gz && \
    mkdir m4 && \
    tar -zxf m4.tar.gz -C m4 --strip-components 1 && \
    cd m4 && \
    ./configure --prefix=/usr/local && \
    make && \
    make install 

RUN curl -L http://install.perlbrew.pl | bash && \
    . ~/perl5/perlbrew/etc/bashrc && \
    echo '. /root/perl5/perlbrew/etc/bashrc' >> /etc/bashrc && \
    perlbrew install perl-5.29.0 -j 4 -n && \
    perlbrew switch perl-5.29.0 

RUN curl http://ftp.gnu.org/gnu/automake/automake-1.16.1.tar.gz -L -o automake.tar.gz && \
    mkdir automake && \
    tar -zxf automake.tar.gz -C automake --strip-components 1 && \
    cd automake && \
    ./configure --prefix=/usr/local && \
    make && \
    make install

# 2.69 ?
RUN curl http://ftp.gnu.org/gnu/autoconf/autoconf-latest.tar.gz -L -o autoconf.tar.gz && \
    mkdir autoconf && \
    tar -zxf autoconf.tar.gz -C autoconf --strip-components 1 && \
    cd autoconf && \
    ./configure --prefix=/usr/local && \
    make && \
    make install

RUN curl http://ftp.gnu.org/gnu/libtool/libtool-2.4.6.tar.gz -L -o libtool.tar.gz && \
    mkdir libtool && \
    tar -zxf libtool.tar.gz -C libtool --strip-components 1 && \
    cd libtool && \
    ./configure --prefix=/usr/local && \
    make && \
    make install

# CMake

#RUN curl https://cmake.org/files/v3.11/cmake-3.11.4.tar.gz -L -o cmake.tar.gz && \
#    mkdir cmake && \
#    tar -zxf cmake.tar.gz -C cmake --strip-components 1 && \
#    cd cmake && \
#    ./bootstrap && \
#    make -j 4 && \
#    make install

# OpenJPEG

RUN yum install -y \
    # needed for openjpeg
    lcms2-devel \
    libpng-devel \
    zlib-devel

RUN curl https://github.com/uclouvain/openjpeg/archive/v2.3.0.tar.gz -L -o openjpeg.tar.gz && \
    mkdir openjpeg && \
    tar -zxf openjpeg.tar.gz -C openjpeg --strip-components 1 && \
    cd openjpeg && \
    cmake . && \
    make -j 4 && \
    make install && \
    ldconfig

# libtiff

# Note: This doesn't support GL or jpeg 8/12

RUN yum install -y \
    # needed for libtiff
    freeglut-devel \
    libjpeg-devel \
    mesa-libGL-devel \
    mesa-libGLU-devel \
    xz-devel

RUN curl https://www.cl.cam.ac.uk/~mgk25/jbigkit/download/jbigkit-2.1.tar.gz -L -o jbigkit.tar.gz && \
    mkdir jbigkit && \
    tar -zxf jbigkit.tar.gz -C jbigkit --strip-components 1 && \
    cd jbigkit/libjbig && \
    make && \
    cp *.o /usr/local/lib/. && \
    cp *.h /usr/local/include/. && \
    ldconfig

RUN curl https://download.osgeo.org/libtiff/tiff-4.0.9.tar.gz -L -o tiff.tar.gz && \
    mkdir tiff && \
    tar -zxf tiff.tar.gz -C tiff --strip-components 1 && \
    cd tiff && \
    ./configure && \
    make -j 4 && \
    make install && \
    ldconfig

# Rebuild openjpeg with our libtiff 
RUN cd openjpeg && \
    cmake . && \
    make -j 4 && \
    make install && \
    ldconfig

# OpenSlide

ENV PKG_CONFIG_PATH=/usr/local/lib/pkgconfig:/usr/lib64/pkgconfig

RUN yum install -y \
    # needed for openslide
    cairo-devel \
    libtool 

# Install newer versions of glib2, gdk-pixbuf2, libxml2.  
# In our setup.py, we may want to confirm glib2 >= 2.25.9

RUN curl http://ftp.gnome.org/pub/gnome/sources/glib/2.25/glib-2.25.9.tar.gz -L -o glib-2.tar.gz && \
    mkdir glib-2 && \
    tar -zxf glib-2.tar.gz -C glib-2 --strip-components 1 && \
    cd glib-2 && \
    export CFLAGS=-fPIC LDFLAGS=-fPIC CPPFLAGS=-fPIC && \
    ./configure --prefix=/usr/local --enable-static --disable-shared && \
    make && \
    make install

RUN curl https://ftp.gnome.org/pub/gnome/sources/gdk-pixbuf/2.21/gdk-pixbuf-2.21.7.tar.gz -L -o gdk-pixbuf-2.tar.gz && \
    mkdir gdk-pixbuf-2 && \
    tar -zxf gdk-pixbuf-2.tar.gz -C gdk-pixbuf-2 --strip-components 1 && \
    cd gdk-pixbuf-2 && \
    export CFLAGS=-fPIC LDFLAGS=-fPIC CPPFLAGS=-fPIC && \
    ./configure --prefix=/usr/local  --enable-static --disable-shared && \
    make && \
    make install

RUN curl http://xmlsoft.org/sources/libxml2-2.7.8.tar.gz -L -o libxml2.tar.gz && \
    mkdir libxml2 && \
    tar -zxf libxml2.tar.gz -C libxml2 --strip-components 1 && \
    cd libxml2 && \
    export CFLAGS=-fPIC LDFLAGS=-fPIC CPPFLAGS=-fPIC && \
    ./configure --prefix=/usr/local  --enable-static --disable-shared && \
    make && \
    make install

RUN curl https://github.com/openslide/openslide/archive/v3.4.1.tar.gz -L -o openslide.tar.gz && \
    mkdir openslide && \
    tar -zxf openslide.tar.gz -C openslide --strip-components 1 && \
    cd openslide && \
    export CFLAGS=-fPIC LDFLAGS=-fPIC CPPFLAGS=-fPIC && \
    autoreconf -ifv && \
    ./configure --enable-static --disable-shared && \
    make -j 4 && \
    make install && \
    ldconfig

# Sample code to insert in the middle of a build cycle for debug
#     true
# 
#RUN true && \
#    cd openslide && \

RUN git clone https://github.com/openslide/openslide-python && \
    cd openslide-python && \ 
    python -c 's = open("setup.py").read().replace("_convert.c'\''", "_convert.c'\''], libraries=['\''openslide'\'', '\''Xrender'\''");open("setup.py", "wb").write(s)' && \
    /opt/python/cp27-cp27mu/bin/pip wheel . -w wheelhouse/ && \
    auditwheel repair wheelhouse/openslide_python-1.1.1-cp27-cp27mu-linux_x86_64.whl -w wheelhouse/ && \
    ls -l wheelhouse

List of updates:

• uses dockcross/manylinux-x64 what already includes the latest version of CMake
• statically compile all dependencies

Output of autitwheel:

Repairing openslide_python-1.1.1-cp27-cp27mu-linux_x86_64.whl
Previous filename tags: linux_x86_64
New filename tags: manylinux1_x86_64
Previous WHEEL info tags: cp27-cp27mu-linux_x86_64
New WHEEL info tags: cp27-cp27mu-manylinux1_x86_64