Jean-Christophe Fillion-Robin jcfr

Helpful instructions for AI agents for 3D Slicer extension development

Connect to 3D Slicer

Never ask the user to copy-paste code. Instead, use Slicer web server that allows execution of Python code via a web API.

You can connect to a running instance of 3D Slicer by giving these instructions to the user: Go to Web Server module, enable "Slicer API exec" in Advanced section, and click "Start server" button.

Alternatively, find a free port (2016, 2017, 2018, ...) and start 3D Slicer with the Web Server "Slicer API exec" endpoint enabled:

Agent Tool Cross-Compatibility Matrix

Last updated: 2026-03-13

Instructions & Rules

How each tool discovers project-level instruction, guidance, and rule files.

[!NOTE]

CUDA GPU Compute Capability - Compatibility

Note

Find the NVIDIA GPU products matching the compute capability versions below here:
- compute capability ≥ 7.5 (≥ sm_75)
- compute capability < 7.5 (< sm_75)
Find me at bit.ly/cuda-gencode-compat-matrix

CUDA Terminology Reference

Git Worktree Best Practices and Tools

Last Updated: 2024-02-06

Overview

Git worktrees allow you to check out multiple branches simultaneously in separate directories, while sharing a single .git metadata store.

THere are some best practices, useful Git aliases, and shell functions for efficiently managing Git worktrees. It covers:

Setting up Git aliases for worktree operations.
Using shell functions for enhanced worktree management.

The issue

When a fixture is not used but needs to be included for some reasons, pylint will rightfully issue a warning. For instance, a fixture setup a specific database state and another fixture include it to ensure database is in a specific state.

@pytest.fixture
def init_database():
    """Setup database state"""
    ...

Total of pip packages downloaded separated by Python versions

From September 26, 2017 to November 31, 2017.

Python versions from 2.6 to 3.6

	volumesDir = r"c:\Users\andra\OneDrive\Projects\SlicerTesting4\20190523-AutoWWWL\volumes"
	screenshotsDir = r"c:\Users\andra\OneDrive\Projects\SlicerTesting4\20190523-AutoWWWL\screenshots"

	methods = [
	["baseline", autoContrastSlicerDefault],
	["hist-0.1-99.9", lambda fn: autoContrastVtkImageHistogramStatisticsDefault(fn, 0.1, 99.9, 0.00, 0.0)], # = itksnap
	["hist-1.0-99.9", lambda fn: autoContrastVtkImageHistogramStatisticsDefault(fn, 1.0, 99.9, 0.10, 0.0)],
	["hist-1.0-99.0-x0.10", lambda fn: autoContrastVtkImageHistogramStatisticsDefault(fn, 1.0, 99.0, 0.10, 0.10)],
	["hist-1.0-99.0-x0.20", lambda fn: autoContrastVtkImageHistogramStatisticsDefault(fn, 1.0, 99.0, 0.10, 0.20)],
	]

	from liqui import Liqui # https://pypi.python.org/pypi/liqui
	import datetime
	import pandas as pd


	api_key = 'YOUR_API_KEY'
	api_secret = 'YOU_API_SECRET'

	csv_filename = 'liqui_tx.csv'

	# ~/.bashrc: executed by bash(1) for non-login shells.
	# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
	# for examples

	# If not running interactively, don't do anything
	case $- in
	i) ;;
	*) return;;
	esac