The Leaflet JS mapping library has lots of plugins available. The Leaflet package for R provides direct support for some, but far from all, of these plugins, by providing R functions for invoking the plugins.
If you as an R user find yourself wanting to use a Leaflet plugin that isn't directly supported in the R package, you can use the technique shown here to load the plugin yourself and invoke it using JS code.
@jcheng5, thank you for this thread and all the directions.
Sharing our successful integration of one JS plugin for tile-layer opacity.
Shiny app code is here. The js/css files have to be downloaded before execution.
The bulk of the work was to find the Leaflet JS 'hook-up' objects, which are not documented.