jcreinhold

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Normalize the intensity of a set of images by 
finding the median 99th percentile of all images
and dividing each image by that value
Author: Jacob Reinhold
"""

import os
import re

jcreinhold

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Normalize the intensity of a CT image
Author: Jacob Reinhold
"""

import sys
from argparse import ArgumentParser
from pathlib import Path
from typing import Tuple, Union

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tiramisu-brulee exercise
================================================================================

The goal of this exercise is to get up-and-running with the tiramisu-brulee 
package found here: https://github.com/jcreinhold/tiramisu-brulee

Use the documentation if you get stuck: https://tiramisu-brulee.readthedocs.io

If you run into a bug, raise an issue here: 
    https://github.com/jcreinhold/tiramisu-brulee/issues

jcreinhold

from pytorch_lightning.utilities.parsing import AttributeDict as adict

def to_adict(d: dict) -> adict:
    """ recursively convert a dictionary to an AttributeDict """
    for k, v in d.items():
        if isinstance(v, dict):
            d[k] = to_adict(v)
    return adict(d)

jcreinhold

jcreinhold

#!/usr/bin/env bash
#
# use the following command to run this script: source ./create_env.sh
#
# ** `source` in the above command is necessary for this script to run correctly **
#
# Created on: May 14, 2021
# Author: Jacob Reinhold ([email protected])

if [[ "$OSTYPE" != "linux-gnu" && "$OSTYPE" != "darwin"* ]]; then

jcreinhold