Skip to content

Instantly share code, notes, and snippets.

@jctoledo
Last active December 19, 2015 01:59
Show Gist options
  • Select an option

  • Save jctoledo/5879963 to your computer and use it in GitHub Desktop.

Select an option

Save jctoledo/5879963 to your computer and use it in GitHub Desktop.
Q5: retrieve genes that are annotated with a specific function that was not inferred by computational analysis.
DL query: gene that 'has function' some function that inverse(go_term) some ('has evidence' some (not 'inferred from electronic annotation'))
# gene : http://semanticscience.org/resource/SIO_010035
# 'has function' : http://semanticscience.org/resource/SIO_000225
# function : http://semanticscience.org/resource/SIO_000017
# go_term : http://bio2rdf.org/geneid_vocabulary:go_term
# 'has evidence' : http://semanticscience.org/resource/SIO_000772
# 'inferred from electronic annotation' : http://purl.obolibrary.org/obo/ECO_0000501
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment