Testing pysam installation with Python3

batch-install.sh

#!/bin/bash

for VERSION in 3.3.6 3.4.0 3.4.1 3.4.2 3.4.3
do
  bash install-python.sh $VERSION
  bash install-pysam.sh $VERSION
done

install-pysam.sh

#!/bin/bash

# Install pysam for a given Python3 version.
# Requires a pre-created virtual environment in the current working directory
# named ve#.#.#
# Input is version number, e.g. 3.4.3
# usage: bash install-pysam.sh #.#.#

VERSION=$1

echo "Installing pysam for Python$VERSION"

source ve$VERSION/bin/activate
pip install pysam
python -c "import pysam"
deactivate

install-python.sh

#!/bin/bash

# Install Python3 from source and creates a virtual environment.
# Input is version number, e.g. 3.4.3
# usage: bash install-python.sh #.#.#

VERSION=$1

echo "Installing Python$VERSION"

wget https://www.python.org/ftp/python/$VERSION/Python-$VERSION.tgz --no-check-certificate
tar xzf Python-$VERSION.tgz
cd Python-$VERSION

./configure --prefix=`pwd`
make
make test
make install

cd ..

virtualenv -p Python-$VERSION/bin/python3 ve$VERSION