Skip to content

Instantly share code, notes, and snippets.

@jeetsukumaran

jeetsukumaran/raxml_multi_boot_sge.rst

Created January 21, 2010 07:02
Show Gist options
  • Save jeetsukumaran/282641 to your computer and use it in GitHub Desktop.
Save jeetsukumaran/282641 to your computer and use it in GitHub Desktop.
Download ZIP
Phylogenetic Analysis: Multi-Processor RAxML Non-Parametric Bootstraps Under SGE
Raw
raxml_multi_boot_sge.rst

Phylogenetic Analysis: Multi-Processor RAxML Non-Parametric Bootstraps Under SGE

Model File (model.txt)

DNA, cr = 1-732
DNA, cytb = 733-1846
DNA, struct = 1847-2716

SGE Job Script

# /bin/sh
#$ -cwd
#$ -V
#$ -q "general.q"
#$ -pe mpi_general 8
#$ -l h_vmem=1G
#$ -l vf=1G
/opt/openmpi/bin/mpirun -np 8  /home/jeet/Environment/local/bin/raxmlHPC-MPI -x 314159265 -# 256 -m GTRMIX -q model.txt -n pythonidae-mle -s pythonidae.phylip.dat
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment