install-r-on-hpc-with-no-admin-priv.sh

#! /bin/sh

# Just a little bit of a dependency dance here:

cd ~/src
wget --no-check-certificate https://zlib.net/zlib-1.2.11.tar.gz
tar xf zlib-1.2.11.tar.gz
cd zlib-1.2.11.tar.gz
configure --prefix=$HOME/Environment/local
make && make install

cd ~/src
wget http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz
tar xf bzip2-1.0.6.tar.gz
cd bzip2-1.0.6
sed -i 's/^CFLAGS=-Wall/CFLAGS=-fPIC -Wall/' Makefile
make && make install PREFIX=$HOME/Environment/local

cd ~/src
wget --no-check-certificate https://tukaani.org/xz/xz-5.2.3.tar.gz
tar xf xz-5.2.3.tar.gz
cd xz-5.2.3
./configure --prefix=$HOME/Environment/local
make && make install

cd ~/src
wget ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-8.41.tar.bz2
tar xf pcre-8.41.tar.bz2
cd pcre-8.41
./configure --enable-utf8 --prefix=$HOME/Environment/local
make && make install

cd ~/src
wget http://git.savannah.gnu.org/cgit/readline.git/snapshot/readline-master.tar.gz
tar xf readline-master.tar.gz
cd readline-master
./configure --prefix=$HOME/Environment/local
make && make install

cd ~/src
wget https://ftp.gnu.org/pub/gnu/libiconv/libiconv-1.15.tar.gz
tar xf libiconv-1.15.tar.gz
cd libiconv-1.15
./configure --prefix=$HOME/Environment/local
make && make install

$ cd ~/src
$ wget http://download.icu-project.org/files/icu4c/54.1/icu4c-54_1-src.tgz
$ tar xf icu4c-54_1-src.tgz
$ cd icu/source
$ ./configure --prefix=$HOME/Environment/local
$ make && make install

# And then something to point the R configure to the right place (some of these
# are actually taken care off in my "``~/.bashrc``", but no harm in repeating
# them here.

export PATH=$HOME/Environment/local/bin:$PATH
export LD_LIBRARY_PATH=$HOME/Environment/local/lib:$LD_LIBRARY_PATH
export ZLIB_HOME=$HOME/Environment/local/
export PKG_CONFIG_PATH="$PKG_CONFIG_PATH:$HOME/Environment/local/lib/pkgconfig"
export CFLAGS="-I$HOME/Environment/local/include"
export CPPFLAGS="-I$HOME/Environment/local/include"
export CXXFLAGS="-I$HOME/Environment/local/include"
export LDFLAGS="-L$HOME/Environment/local/lib"

# Before getting down to business:

cd ~/src
export RVER=3.5.0
wget https://cran.r-project.org/src/base/R-3/R-$RVER.tar.gz
tar xf R-$RVER.tar.gz
cd R-$RVER
./configure --prefix=$HOME/Environment/local --with-x=no
make && make install