This gist will let you efficiently install all the packages main Jefferis Lab R packages.
Start a clean R session and do:
if(!require("devtools")) install.packages("devtools")
devtools::source_gist("52cf9ff123e5107cd96ab2bbbe85a29e")
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June 1, 2016 20:01
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Install all Jlab
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| # we need devtools for additional installs | |
| if(!require("devtools")) install.packages("devtools") | |
| # this will install all the regular nat packages | |
| devtools::source_gist("39a1182f726989db7e03") | |
| # Old style nat.as | |
| devtools::install_github("jefferis/nat.as") | |
| # fetch AnalysisSuite code bundle from github | |
| nat.as::install_analysis_suite() | |
| # Image processing/registration | |
| devtools::install_github("jefferislab/jimpipeline") | |
| # for EM stuff | |
| devtools::install_github("jefferis/rcatmaid") | |
| devtools::install_github("jefferis/elmr") | |
| # ephys | |
| devtools::install_github("jefferis/gphys") | |
| # imaging | |
| devtools::install_github("jefferis/scanimage") | |
| # behaviour | |
| devtools::install_github("jefferislab/flywatch") | |
| devtools::install_github("jefferis/fmfio") |
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