Last active
December 15, 2021 13:39
-
-
Save jeffreycwitt/e7c270aae46f403845c87aa57e4b82af to your computer and use it in GitHub Desktop.
fuseki compact error
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
19:01:54 INFO Admin :: [33772] Compact dataset /ds | |
19:01:54 INFO Server :: Task : 1 : Compact | |
19:01:54 INFO Server :: [Task 1] starts : Compact | |
19:01:54 INFO Compact :: [33772] >>>> Start compact /ds | |
19:01:58 WARN Compact :: [33772] **** Exception in compact | |
org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read | |
at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:102) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:110) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:103) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:52) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.atlas.iterator.Iter$IterMap.next(Iter.java:417) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:41) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:4.3.1] | |
at java.util.Iterator.forEachRemaining(Iterator.java:133) ~[?:?] | |
at org.apache.jena.tdb2.sys.CopyDSG.lambda$copy$0(CopyDSG.java:38) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.exec(Txn.java:77) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.executeWrite(Txn.java:125) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.CopyDSG.lambda$copy$1(CopyDSG.java:36) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.exec(Txn.java:77) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.executeRead(Txn.java:115) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.CopyDSG.copy(CopyDSG.java:35) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.DatabaseOps.compact(DatabaseOps.java:261) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.DatabaseOps.compact(DatabaseOps.java:210) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.DatabaseMgr.compact(DatabaseMgr.java:80) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.fuseki.ctl.ActionCompact$CompactTask.run(ActionCompact.java:109) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.fuseki.async.AsyncPool.lambda$submit$0(AsyncPool.java:66) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.fuseki.async.AsyncTask.call(AsyncTask.java:100) [fuseki-server.jar:4.3.1] | |
at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] | |
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) [?:?] | |
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) [?:?] | |
at java.lang.Thread.run(Thread.java:833) [?:?] | |
Caused by: org.apache.thrift.protocol.TProtocolException: Unrecognized type 0 | |
at org.apache.thrift.protocol.TProtocolUtil.skip(TProtocolUtil.java:144) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.protocol.TProtocolUtil.skip(TProtocolUtil.java:60) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.riot.thrift.wire.RDF_Term.standardSchemeReadValue(RDF_Term.java:433) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.TUnion$TUnionStandardScheme.read(TUnion.java:224) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.TUnion$TUnionStandardScheme.read(TUnion.java:213) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.TUnion.read(TUnion.java:138) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:82) ~[fuseki-server.jar:4.3.1] | |
... 30 more | |
19:01:58 ERROR Server :: Exception in task 1 execution | |
org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read | |
at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:102) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:110) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:103) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:52) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.atlas.iterator.Iter$IterMap.next(Iter.java:417) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:41) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:4.3.1] | |
at java.util.Iterator.forEachRemaining(Iterator.java:133) ~[?:?] | |
at org.apache.jena.tdb2.sys.CopyDSG.lambda$copy$0(CopyDSG.java:38) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.exec(Txn.java:77) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.executeWrite(Txn.java:125) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.CopyDSG.lambda$copy$1(CopyDSG.java:36) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.exec(Txn.java:77) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.system.Txn.executeRead(Txn.java:115) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.CopyDSG.copy(CopyDSG.java:35) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.DatabaseOps.compact(DatabaseOps.java:261) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.sys.DatabaseOps.compact(DatabaseOps.java:210) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.DatabaseMgr.compact(DatabaseMgr.java:80) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.fuseki.ctl.ActionCompact$CompactTask.run(ActionCompact.java:109) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.fuseki.async.AsyncPool.lambda$submit$0(AsyncPool.java:66) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.fuseki.async.AsyncTask.call(AsyncTask.java:100) [fuseki-server.jar:4.3.1] | |
at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] | |
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) [?:?] | |
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) [?:?] | |
at java.lang.Thread.run(Thread.java:833) [?:?] | |
Caused by: org.apache.thrift.protocol.TProtocolException: Unrecognized type 0 | |
at org.apache.thrift.protocol.TProtocolUtil.skip(TProtocolUtil.java:144) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.protocol.TProtocolUtil.skip(TProtocolUtil.java:60) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.riot.thrift.wire.RDF_Term.standardSchemeReadValue(RDF_Term.java:433) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.TUnion$TUnionStandardScheme.read(TUnion.java:224) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.TUnion$TUnionStandardScheme.read(TUnion.java:213) ~[fuseki-server.jar:4.3.1] | |
at org.apache.thrift.TUnion.read(TUnion.java:138) ~[fuseki-server.jar:4.3.1] | |
at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:82) ~[fuseki-server.jar:4.3.1] | |
... 30 more |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment